Vertebrate Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Abingdon island giant tortoise Chelonoidis abingdonii GCF_003597395.1_ASM359739v1 10,618 2,300,739,315 63,430 131,201,757 27.42
2 Aeolian wall lizard (La Canna islet alternate hap 2022) Podarcis raffonei GCA_027172095.1_rPodRaf1.alt 4,811 182,031,793 3 260 27.46
3 Aeolian wall lizard (La Canna islet primary hap 2022 refseq) Podarcis raffonei GCF_027172205.1_rPodRaf1.pri 27 1,513,131,503 30 23,116 38.30
4 African bullfrog (1538 2019) Pyxicephalus adspersus GCA_004786255.1_Pads_1.0 5,411 1,563,367,516 121,461 164,412,553 27.96
5 African clawed frog (2021) Xenopus laevis GCF_017654675.1_Xenopus_laevis_v10.1 55 2,742,469,346 667 1,674,718 43.70
6 American alligator (2023 refseq) Alligator mississippiensis GCF_030867095.1_rAllMis1 195 2,346,795,873 161 16,453,847 42.90
7 American alligator (KSC_2009_1 2016) Alligator mississippiensis GCF_000281125.3_ASM28112v4 7,094 2,161,730,208 236,641 47,274,298 36.07
8 American eel (EN2019 2024) Anguilla rostrata GCF_018555375.3_ASM1855537v3 967 976,090,453 985 94,525 27.48
9 Asian vine snake (Xishuangbanna 2023) Ahaetulla prasina GCF_028640845.1_ASM2864084v1 748 1,772,420,080 331 33,100 48.91
10 Asiatic toad (SCDJY-AF-19 2020) Bufo gargarizans GCF_014858855.1_ASM1485885v1 748 4,545,482,719 3,874 81,454,369 58.76
11 Atlantic hagfish (primary hap 2024) Myxine glutinosa GCA_964187855.1_kmMyxGlut1.1 4,004 3,057,523,704 4,412 882,096 74.33
12 Atlantic stingray (hap1 2023 refseq) Hypanus sabinus GCF_030144855.1_sHypSab1.hap1 2,989 4,044,869,043 1,648 329,600 51.80
13 Atlantic stingray (hap2 2023) Hypanus sabinus GCA_030144785.1_sHypSab1.hap2 1,412 3,635,158,545 1,633 326,600 50.34
14 Australian saltwater crocodile Crocodylus porosus GCF_001723895.1_CroPor_comp1 70 2,049,536,252 97,039 108,664,899 34.94
15 axolotl (DD151 2021) Ambystoma mexicanum GCA_002915635.3_AmbMex60DD 27,157 28,206,905,576 184,422 3,685,753 68.20
16 basking shark (sCetMax3.hap1.1 2024) Cetorhinus maximus GCA_964194155.1_sCetMax3.hap1.1 5,088 3,993,866,540 2,778 555,635 65.99
17 basking shark (sCetMax3.hap2.1 2024) Cetorhinus maximus GCA_964194165.1_sCetMax3.hap2.1 3,829 3,817,333,378 2,740 548,000 67.08
18 Blainville's horned lizard (alternate hap 2022) Phrynosoma blainvillii GCA_026167975.1_rPhrBla1.0.hap2 52 1,968,358,621 64 6,400 40.57
19 Blainville's horned lizard (primary hap 2022) Phrynosoma blainvillii GCA_026167985.1_rPhrBla1.0.hap1 78 2,210,317,752 73 7,300 40.92
20 blonde ray (primary hap 2023) Raja brachyura GCA_963514005.1_sRajBra1.1 1,647 2,700,467,673 2,269 453,800 66.30
21 bowfin (hap2 2024) Amia calva GCA_036365475.1_fAmiCal2.hap2 297 958,875,937 80 16,000 36.24
22 brown anole (Geneva1000 2022 refseq) Anolis sagrei ordinatus GCF_025583915.1_AnoSag2.1 3,738 1,926,425,113 114,440 31,587,590 45.00
23 Brown anole (rAnoSag1 2024) Anolis sagrei GCA_037176765.1_rAnoSag1.mat 29 1,950,830,970 191 38,200 46.73
24 Brown anole (rAnoSag1 2024) Anolis sagrei GCA_037176775.1_rAnoSag1.pat 41 1,727,284,250 172 34,400 44.79
25 brown house snake (FMNH 251328 2023) Boaedon fuliginosus GCA_027560395.1_ASM2756039v1 583,668 1,404,044,445 169,987 25,801,168 34.95
26 brown spotted pit viper Protobothrops mucrosquamatus GCF_001527695.2_P.Mucros_1.0 52,280 1,673,876,332 115,571 131,596,805 35.18
27 Burmese python Python bivittatus GCF_000186305.1_Python_molurus_bivittatus-5.0.2 39,113 1,435,052,152 235,132 50,501,725 25.32
28 California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022) Arizona elegans GCA_022578425.1_rAriEle1.0.a 54,869 2,206,698,359 5,955 595,511 46.05
29 California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022) Arizona elegans GCA_022577455.1_rAriEle1.0.p 140 1,842,551,953 256 25,618 46.73
30 Caribbean electric ray (hap1 2024) Narcine bancroftii GCA_036971445.1_sNarBan1.hap1 596 3,328,453,053 1,443 277,765 54.80
31 Caribbean electric ray (hap2 2024) Narcine bancroftii GCA_036971175.1_sNarBan1.hap2 445 3,110,263,114 1,507 286,941 52.51
32 central bearded dragon Pogona vitticeps GCF_900067755.1_pvi1.1 13,749 1,716,675,060 90,546 68,427,839 29.79
33 Chinese alligator Alligator sinensis GCF_000455745.1_ASM45574v1 9,317 2,270,567,745 167,965 71,965,296 37.54
34 Chinese soft-shelled turtle Pelodiscus sinensis GCF_000230535.1_PelSin_1.0 19,904 2,202,483,752 185,476 95,844,368 32.34
35 coelacanth Latimeria chalumnae GCF_000225785.1_LatCha1 22,819 2,860,591,921 269,010 676,999,153 34.87
36 coelacanth (fLatCha1 primary hap 2024) Latimeria chalumnae GCF_037176945.1_fLatCha1.pri 197 2,947,609,019 154 30,632 54.45
37 common blue-tongued skink (hap1 2024) Tiliqua scincoides GCA_035046495.1_rTilSci1.hap1 827 1,694,434,935 286 57,200 37.75
38 common blue-tongued skink (hap2 2024) Tiliqua scincoides GCA_035046505.1_rTilSci1.hap2 350 1,623,332,312 372 74,400 37.07
39 common frog (alternate hap 2021) Rana temporaria GCA_905171725.1_aRanTem1.1_alternate_haplotype 12,019 3,686,210,129 14 85,788 55.47
40 common garter snake Thamnophis sirtalis GCF_001077635.1_Thamnophis_sirtalis-6.0 7,930 1,424,897,867 246,220 302,274,245 27.09
41 common lizard Z.vivipara (primary hap 2023) Zootoca vivipara GCF_963506605.1_rZooViv1.1 48 1,440,239,386 683 136,600 45.64
42 common spadefoot toad (aPelFus1 2024) Pelobates fuscus GCA_036172605.1_aPelFus1.pri 160 3,606,474,367 349 69,626 51.45
43 common spadefoot toad (aPelFus1 2024) Pelobates fuscus GCF_036172605.1_aPelFus1.pri 159 3,606,456,729 349 69,626 51.45
44 common toad (alternate hap 2021) Bufo bufo GCA_905171715.1_aBufBuf1.1_alternate_haplotype 24,195 3,744,894,388 156 491,279 61.49
45 common toad (primary hap 2021) Bufo bufo GCF_905171765.1_aBufBuf1.1 1,306 5,044,744,194 4,199 9,878,258 62.71
46 common wall lizard (yellow 2019) Podarcis muralis GCF_004329235.1_PodMur_1.0 2,161 1,511,020,169 4,085 2,917,502 36.17
47 common wall lizard (hap1 2024) Podarcis muralis GCA_964188315.1_rPodMur119.hap1.1 185 1,522,641,370 827 165,400 38.70
48 common wall lizard (hap2 2024) Podarcis muralis GCA_964188365.1_rPodMur119.hap2.1 91 1,433,931,530 734 146,800 37.85
49 corn snake (Columbia U 2023) Pantherophis guttatus GCF_029531705.1_CU_Pguttatus_1 466 1,708,105,946 3,553 58,150,805 48.06
50 corn snake (EG266 2020) Pantherophis guttatus GCF_001185365.1_UNIGE_PanGut_3.0 34,268 1,706,961,544 84,947 80,217,334 40.33
51 corroboree frog (hap1 2023) Pseudophryne corroboree GCA_028390055.1_aPseCor3.hap1 3,527 8,945,609,516 2,431 17,791,795 76.17
52 corroboree frog (hap2 2023 refseq) Pseudophryne corroboree GCF_028390025.1_aPseCor3.hap2 3,127 8,872,758,793 2,699 21,212,457 74.73
53 Cretan wall lizard (alternate hap 2023) Podarcis cretensis GCA_951804955.1_rPodCre2.1_alternate_haplotype 1,936 1,372,769,884 0 0 38.04
54 Cretan wall lizard (primary hap 2023) Podarcis cretensis GCA_951804945.1_rPodCre2.1 51 1,507,627,055 47 9,400 38.66
55 diamondback terrapin (hap1 2023 refseq) Malaclemys terrapin pileata GCF_027887155.1_rMalTer1.hap1 76 2,211,221,380 141 1,749,567 46.30
56 diamondback terrapin (hap2 rMalTer1 2023) Malaclemys terrapin pileata GCA_027887205.1_rMalTer1.hap2 59 2,212,837,039 127 498,579 46.36
57 eastern brown snake Pseudonaja textilis GCF_900518735.1_EBS10Xv2-PRI 28,550 1,590,035,073 59,472 39,286,110 39.63
58 eastern musk turtle (primary hap 2023) Sternotherus odoratus GCA_032164245.1_rSteOdo2_p1.0 218 1,759,411,633 553 110,600 30.45
59 eastern narrow-mouthed toad (hap2 2023) Gastrophryne carolinensis GCA_027917415.1_aGasCar1.hap2 590 4,305,890,454 1,773 354,600 60.57
60 eastern narrow-mouthed toad (primary haplotype 2023) Gastrophryne carolinensis GCA_027917425.1_aGasCar1.pri 1,002 4,336,248,441 1,745 349,000 60.57
61 elephant shark (2021) Callorhinchus milii GCF_018977255.1_IMCB_Cmil_1.0 1,762 991,535,955 14,404 67,999 37.93
62 epaulette shark (alternate hap sHemOce1 2021) Hemiscyllium ocellatum GCA_020745765.1_sHemOce1.mat.decon 4,000 4,149,461,884 3,552 83,364,248 44.34
63 epaulette shark (primary hap 2021 refseq) Hemiscyllium ocellatum GCF_020745735.1_sHemOce1.pat.X.cur. 1,962 3,983,466,396 3,716 77,564,682 62.70
64 European common frog (2021) Rana temporaria GCF_905171775.1_aRanTem1.1 554 4,111,422,596 1,860 26,194,034 55.46
65 European conger (primary hap 2023 refseq) Conger conger GCF_963514075.1_fConCon1.1 380 1,136,402,888 1,009 201,800 35.55
66 European eel (alternate hap 2020) Anguilla anguilla GCA_013347865.1_fAngAng1.alt 2,338 965,248,483 0 0 27.36
67 European eel (primary hap 2020 refseq) Anguilla anguilla GCF_013347855.1_fAngAng1.pri 54 979,045,926 640 3,868,499 27.45
68 European leaf-toed gecko (hap1 2023) Euleptes europaea GCF_029931775.1_rEulEur1.hap1 591 1,781,916,107 153 4,045,040 39.82
69 European leaf-toed gecko (hap2 2023) Euleptes europaea GCA_029931755.1_rEulEur1.hap2 381 1,775,520,415 177 5,646,691 39.56
70 European pond turtle (hap1 2023 genbank) Emys orbicularis GCA_028017835.1_rEmyOrb1.hap1 106 2,309,740,635 148 3,324,230 35.43
71 European pond turtle (hap1 2023 refseq) Emys orbicularis GCF_028017835.1_rEmyOrb1.hap1 106 2,309,740,635 148 3,324,230 35.43
72 European pond turtle (hap2 rEmyOrb1 2023) Emys orbicularis GCA_028017845.1_rEmyOrb1.hap2 156 2,327,425,914 130 5,287,839 35.51
73 European river lamprey (primary hap 2024) Lampetra fluviatilis GCA_964198595.1_kcLamFluv1.1 1,497 1,042,475,189 1,795 359,000 50.86
74 Far Eastern brook lamprey (LAM-NWPU_2019-01 2020) Lethenteron reissneri GCF_015708825.1_ASM1570882v1 1,946 1,063,028,601 3,287 10,736,065 47.92
75 fence lizard Sceloporus undulatus GCF_019175285.1_SceUnd_v1.1 45,012 1,905,484,175 48,138 47,138,997 34.39
76 fire-bellied toad (alternate hap 2023) Bombina bombina GCA_027579415.1_aBomBom1.alt 13,751 1,936,746,371 0 0 57.30
77 fire-bellied toad (primary hap 2023 refseq) Bombina bombina GCF_027579735.1_aBomBom1.pri 2,467 10,019,663,791 7,009 198,898,177 69.42
78 Fleay's barred frog (hap1 2024) Mixophyes fleayi GCA_038048845.1_aMixFle1.hap1 2,806 2,969,628,263 1,421 3,802,133 46.39
79 Fleay's barred frog (hap2 2024) Mixophyes fleayi GCA_038048865.1_aMixFle1.hap2 914 2,876,209,288 1,383 3,308,527 44.69
80 Florida worm lizard (hap1 rRhiFlo1 2023) Rhineura floridana GCA_030035715.1_rRhiFlo1.hap1 623 2,321,796,813 213 3,744,152 45.22
81 Florida worm lizard (hap2 2023) Rhineura floridana GCF_030035675.1_rRhiFlo1.hap2 76 2,307,419,594 242 6,466,284 45.32
82 Florida worm lizard (hap2 rRhiFlo1 2023) Rhineura floridana GCA_030035675.1_rRhiFlo1.hap2 77 2,307,436,586 242 6,466,284 45.32
83 Gaboon caecilian (alternate hap 2019) Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype 9,650 3,271,590,920 1 30 52.45
84 Gaboon caecilian (v1.2 2021 genbank) Geotrypetes seraphini GCA_902459505.2_aGeoSer1.2 164 3,779,430,017 433 5,502,713 52.86
85 gharial (Ggan-Ray 2016) Gavialis gangeticus GCF_001723915.1_GavGan_comp1 81 2,640,792,433 248,526 698,155,287 27.15
86 gharial (hap1 2023) Gavialis gangeticus GCA_030020385.1_rGavGan2.hap1 298 2,339,480,201 61 1,123,919 33.04
87 gharial (hap2 2023) Gavialis gangeticus GCA_030020295.1_rGavGan2.hap2 160 2,328,538,659 118 1,108,111 32.92
88 giant manta (hap1 2023) Mobula birostris GCA_030028105.1_sMobBir1.hap1 4,715 4,014,635,230 1,810 30,852,630 54.43
89 giant manta (hap2 2023) Mobula birostris GCA_030035685.1_sMobBir1.hap2 1,558 3,634,101,053 1,742 54,983,815 51.68
90 Goodes thornscrub tortoise (Sinaloan 2019) Gopherus evgoodei GCF_007399415.2_rGopEvg1_v1.p 383 2,298,564,209 562 29,560,319 33.37
91 Goodes thornscrub tortoise (Sinaloan alternate hap 2019) Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt 8,736 1,961,129,424 0 0 33.34
92 gopher snake (HBS135680 alternate hap 2023) Pituophis catenifer annectens GCA_029215685.1_rPitCat1.0.hap2 649 1,682,881,129 584 58,400 45.94
93 gopher snake (HBS135680 primary hap 2023) Pituophis catenifer annectens GCA_029215655.1_rPitCat1.0.hap1 426 1,749,255,673 603 60,300 45.41
94 graceful crag lizard (Gifberg primary hap 2022) Hemicordylus capensis GCF_027244095.1_rHemCap1.1.pri 44 2,294,751,221 42 8,400 41.45
95 Grand Cayman blue iguana (hap1 2023) Cyclura pinguis GCA_030412105.1_rCycPin1.hap1 30 1,983,631,412 28 1,082,164 32.57
96 Grand Cayman blue iguana (hap2 2023) Cyclura pinguis GCA_030412085.1_rCycPin1.hap2 33 1,955,392,031 19 19,385,908 32.31
97 gray bichir Polypterus senegalus GCF_016835505.1_ASM1683550v1 9,856 3,673,880,163 3,166 1,583,000 47.67
98 great white shark (alternate hap 2021) Carcharodon carcharias GCA_017639455.1_sCarCar2.alt 39 6,205,005 28 1,535 60.53
99 great white shark (primary hap 2021) Carcharodon carcharias GCF_017639515.1_sCarCar2.pri 719 4,286,311,191 2,645 19,150,268 52.46
100 green anole (JA03-04 2024) Anolis carolinensis GCF_035594765.1_rAnoCar3.1.pri 211 1,850,740,401 841 30,006,477 52.33
101 green anole (v1 2011) Anolis carolinensis GCF_000090745.1_AnoCar2.0 6,457 1,799,143,587 35,533 97,789,820 39.70
102 green anole (v2 2010) Anolis carolinensis GCF_000090745.2_AnoCar2.0 6,456 1,799,126,364 35,530 97,789,817 48.60
103 green sea turtle (v2 alternate hap 2021) Chelonia mydas GCA_015220195.2_rCheMyd1.alt.v2 6,737 1,896,142,417 60 854,042 44.96
104 green sea turtle (v2 primary hap 2021) Chelonia mydas GCF_015237465.2_rCheMyd1.pri.v2 93 2,134,375,114 298 11,960,176 31.96
105 High Himalaya frog Nanorana parkeri GCF_000935625.1_ASM93562v1 25,188 2,053,867,363 122,325 76,078,142 37.46
106 horn shark (hap1 2024) Heterodontus francisci GCA_036365525.1_sHetFra1.hap1 2,307 6,013,065,386 2,781 28,369,521 6.74
107 horn shark (hap2 2024) Heterodontus francisci GCA_036365495.1_sHetFra1.hap2 1,496 5,196,885,747 2,790 29,620,202 62.99
108 hourglass treefrog (maternal 2023) Dendropsophus ebraccatus GCA_027789725.1_aDenEbr1.mat 2,570 2,352,821,159 788 113,357,492 48.50
109 hourglass treefrog (paternal 2023) Dendropsophus ebraccatus GCA_027789765.1_aDenEbr1.pat 2,200 2,214,937,069 804 6,692,944 51.44
110 Iberian parsley frog (aPelIbe1 2024) Pelodytes ibericus GCA_036172795.1_aPelIbe1.pri 99 2,077,659,799 262 52,400 49.33
111 Iberian ribbed newt (20211129_DDA 2022) Pleurodeles waltl GCA_026652325.1_ASM2665232v1 267 20,300,798,037 922 333,042 71.01
112 Indian cobra (NN01 2019) Naja naja GCA_009733165.1_Nana_v5 1,897 1,768,535,092 11,910 109,672,238 40.42
113 Indo-Pacific tarpon (alternate hap 2020) Megalops cyprinoides GCA_013368575.1_fMegCyp1.alt 4,333 920,469,332 3 300 21.53
114 Italian wall lizard (rPodSic1.hap1.1 2024) Podarcis siculus GCA_964188175.1_rPodSic1.hap1.1 294 1,571,381,643 762 152,400 40.39
115 Italian wall lizard (rPodSic1.hap2.1 2024) Podarcis siculus GCA_964188395.1_rPodSic1.hap2.1 152 1,455,930,776 690 138,015 38.73
116 Komodo dragon (SLA01 2019) Varanus komodoensis GCF_004798865.1_ASM479886v1 1,411 1,507,945,839 19,737 14,639,079 24.66
117 Lataste's viper (alternate hap 2022) Vipera latastei GCA_024294605.1_rVipLat1.alt 6,799 1,549,880,332 1 500 44.01
118 Lataste's viper (primary hap 2022) Vipera latastei GCA_024294585.1_rVipLat1.pri 56 1,631,568,913 769 3,547,667 44.82
119 leatherback sea turtle (v2 alternate hap 2020) Dermochelys coriacea GCA_009762595.2_rDerCor1.alt.v2 8,999 1,444,786,651 7 352 47.10
120 leatherback sea turtle (v4 primary hap 2021 refseq G10K) Dermochelys coriacea GCF_009764565.3_rDerCor1.pri.v4 40 2,164,762,090 668 5,594,612 34.21
121 leopard gecko (TG4126 2023) Eublepharis macularius GCF_028583425.1_MPM_Emac_v1.0 76 2,237,397,408 62 6,101 37.92
122 lesser devil ray (2024) Mobula hypostoma GCF_963921235.1_sMobHyp1.1 200 3,475,679,493 697 139,400 54.19
123 Lilford's wall lizard (2023) Podarcis lilfordi GCA_947686815.1_rPodLil1.2 2,149 1,460,103,102 2,346 259,303 36.71
124 little skate (New England 2023) Leucoraja erinacea GCF_028641065.1_Leri_hhj_1 1,769 2,190,861,671 862 81,010 66.54
125 lizards B.pumilum (Western Cape Province JTBG20231 2024) Bradypodion pumilum GCA_035047305.1_BraPum1.0 21 2,486,266,449 18 1,777 56.83
126 lizards E.multicarinata webbii (San Diego HBS135686 primary hap 2024) Elgaria multicarinata webbii GCF_023053635.1_rElgMul1.1.pri 34 1,790,500,004 73 12,700 40.44
127 lizards F.pardalis (Fpa_1 2023) Furcifer pardalis GCA_030440675.1_ASM3044067v1 11 1,609,777,135 12 11,023 42.07
128 lizards P.bocagei (rPodBoc1.hap1.1 2024) Podarcis bocagei GCA_964188305.1_rPodBoc1.hap1.1 507 1,615,206,822 1,005 201,015 41.41
129 lizards P.bocagei (rPodBoc1.hap2.1 2024) Podarcis bocagei GCA_964188325.1_rPodBoc1.hap2.1 627 1,473,581,329 817 163,400 39.42
130 loggerhead turtle (SJ_126:Eziel1 2022) Caretta caretta GCF_023653815.1_GSC_CCare_1.0 2,008 2,134,012,717 745 2,128,794 33.92
131 mainland tiger snake Notechis scutatus GCF_900518725.1_TS10Xv2-PRI 52,414 1,665,525,958 79,478 80,606,990 40.26
132 many-banded krait (BM01 2022) Bungarus multicinctus GCA_023653725.1_ASM2365372v1 448 1,593,755,901 1,631 11,947,689 40.99
133 marbled whiptail (SIMRID8450 2020) Aspidoscelis marmoratus GCA_014337955.1_AspMar1.0 3,826 1,639,530,780 166,840 92,948,330 33.03
134 meadow viper (alternate hap 2022) Vipera ursinii GCA_947247025.1_rVipUrs1.1_alternate_haplotype 9,575 1,180,062,022 12 2,400 41.76
135 meadow viper (primary hap 2022) Vipera ursinii GCA_947247035.1_rVipUrs1.1 384 1,625,023,540 1,819 363,800 45.37
136 Mexican burrowing toad (hap1 2024) Rhinophrynus dorsalis GCA_037306005.1_aRhiDor1.hap1 464 4,745,569,335 2,032 406,419 53.56
137 Mexican burrowing toad (hap2 2024) Rhinophrynus dorsalis GCA_037306015.1_aRhiDor1.hap2 656 4,535,323,468 2,009 401,800 53.02
138 Mexican gopher tortoise (WGS:JAMKFC01 2022) Gopherus flavomarginatus GCF_025201925.1_rGopFla2.mat.asm 621 2,460,542,086 1,866 89,638,462 34.69
139 Mexican gopher tortoise (WGS:JAMKFD01 2022) Gopherus flavomarginatus GCA_025201965.1_rGopFla2.pat.asm 2,992 2,584,697,711 1,790 116,054,540 34.08
140 mimic poison frog (primary hap 2023) Ranitomeya imitator GCA_032444005.1_aRanImi1.pri 1,673 5,956,630,009 765 80,159 2.40
141 Mississippi paddlefish Polyodon spathula GCF_017654505.1_ASM1765450v1 4,235 1,542,083,420 2,963 1,696,468 36.87
142 Northern rubber boa (HBS 135849 alternate hap 2022) Charina bottae GCA_023362785.1_rChaBot1.0.a 224 1,703,974,979 84 8,400 42.47
143 Northern rubber boa (HBS 135849 primary hap 2022) Charina bottae GCA_023362775.1_rChaBot1.0.p 289 1,804,939,834 85 8,500 42.87
144 Northwestern pond turtle (WTP2003 alternate hap 2022) Actinemys marmorata GCA_022086895.1_rActMar1.a 2,508 2,209,870,670 1,800 180,000 48.91
145 Northwestern pond turtle (WTP2003 primary hap 2022) Actinemys marmorata GCA_022086475.1_rActMar1.p 48 2,301,118,547 148 14,823 48.89
146 olive python (hap1 2023) Liasis olivaceus GCA_030867105.1_rLiaOli1.hap1 43 1,486,119,866 73 297,716 30.16
147 olive python (hap2 2023) Liasis olivaceus GCA_030867085.1_rLiaOli1.hap2 65 1,478,263,624 93 5,065,312 29.98
148 one-colored caecilian (2021) Microcaecilia unicolor GCA_901765095.2_aMicUni1.2 1,081 4,685,939,421 2,452 47,437,278 52.44
149 painted frog (alternate hap 2022) Discoglossus pictus GCA_027410455.1_aDisPic1.alt 4,005 1,937,156,624 76 1,862 53.01
150 painted frog (primary hap 2022) Discoglossus pictus GCA_027410445.1_aDisPic1.pri 1,318 3,872,602,052 3,681 62,395,995 55.23
151 Papuan ground boa (hap1 2024) Candoia aspera GCA_035125265.1_rCanAsp1.hap1 180 1,529,331,567 99 19,800 33.58
152 Papuan ground boa (hap2 2024) Candoia aspera GCA_035149785.1_rCanAsp1.hap2 150 1,530,827,941 101 20,200 33.56
153 Peter's clawed frog (aXenPet1 2024) Xenopus petersii GCA_038501915.1_aXenPet1.maternal.cur 1,183 2,613,116,200 1,072 214,400 44.51
154 Peter's clawed frog (aXenPet1 2024) Xenopus petersii GCA_038501925.1_aXenPet1.paternal.cur 888 2,883,796,191 500 100,000 45.47
155 pitted-shelled turtle (YL-2023 2023) Carettochelys insculpta GCA_033958435.1_ASM3395843v1 134 2,180,317,067 12 2,400 47.95
156 plains spadefoot toad (alternate hap 2022) Spea bombifrons GCA_027382365.2_aSpeBom1.2.alt 1,516 785,569,511 0 0 34.39
157 plains spadefoot toad (primary hap 2022) Spea bombifrons GCF_027358695.1_aSpeBom1.2.pri 17 987,655,159 102 3,822,643 36.29
158 prickly gecko (False Entrance Well CCM8104 2023) Heteronotia binoei GCF_032191835.1_APGP_CSIRO_Hbin_v1 661 2,633,472,656 1,608 160,800 46.85
159 Puerto Rican coqui (hap1 2024) Eleutherodactylus coqui GCA_035609145.1_aEleCoq1.hap1 957 3,371,316,047 659 131,800 54.01
160 Puerto Rican coqui (hap2 2024) Eleutherodactylus coqui GCA_035609135.1_aEleCoq1.hap2 827 3,362,534,901 685 137,000 53.92
161 red-eared slider turtle Trachemys scripta elegans GCF_013100865.1_CAS_Tse_1.0 138 2,126,199,303 25,390 82,148,119 30.75
162 reedfish (alternate hap 2021) Erpetoichthys calabaricus GCA_900700845.3_fErpCal1.3_alternate_haplotype 17,082 3,014,944,822 17 314,459 46.95
163 Reeves's turtle Mauremys reevesii GCF_016161935.1_ASM1616193v1 230 2,367,607,229 398 39,800 34.64
164 Ringneck snake (HBS135679 primary hap 2022) Diadophis punctatus similis GCA_023053685.1_rDiaPun1.0.p 444 1,783,023,707 723 72,300 48.68
165 royal ground snake (hap1 2023) Erythrolamprus reginae GCA_031021105.1_rEryReg1.hap1 400 1,964,049,041 1,391 278,200 53.46
166 royal ground snake (hap2 2023) Erythrolamprus reginae GCA_031021085.1_rEryReg1.hap2 1,128 2,038,227,610 0 0 53.01
167 royal ground snake (hap3 2023) Erythrolamprus reginae GCA_031001685.1_rEryReg1.hap3 3,543 2,090,234,102 0 0 57.37
168 rufous frog (hap1 2023) Leptodactylus fuscus GCA_031893025.1_aLepFus1.hap1 2,266 2,307,711,212 973 11,371,605 55.98
169 rufous frog (hap2 2023) Leptodactylus fuscus GCA_031893055.1_aLepFus1.hap2 1,266 2,197,996,823 976 20,381,759 59.61
170 San Diegan legless lizard (HBS135921 alternate hap 2023) Anniella stebbinsi GCA_029215795.1_rAnnSte1.0.hap2 91 1,891,076,299 31 3,100 39.31
171 San Diegan legless lizard (HBS135921 primary hap 2023) Anniella stebbinsi GCA_029215775.1_rAnnSte1.0.hap1 134 1,890,507,581 21 2,100 39.04
172 San Diegan tiger whiptail (alternate hap HBS 135688 2022) Aspidoscelis tigris stejnegeri GCA_023333555.1_rAspTig1.0.a 227 1,675,887,475 44 4,400 39.22
173 San Diegan tiger whiptail (HBS 135688 2022) Aspidoscelis tigris stejnegeri GCA_023333525.1_rAspTig1.0.p 74 1,335,668,279 39 3,900 36.99
174 San Diego alligator lizard (HBS135686 alternate hap 2022) Elgaria multicarinata webbii GCA_023053675.1_rElgMul1.0.a 627 1,810,359,265 27 2,700 40.46
175 San Diego alligator lizard (HBS135686 primary hap 2022) Elgaria multicarinata webbii GCA_023053635.1_rElgMul1.0.p 85 1,790,509,355 23 2,300 40.44
176 San Diego ringneck snake (HBS135679 alternate hap 2022) Diadophis punctatus similis GCA_023053665.1_rDiaPun1.0.a 2,064 1,577,714,162 572 57,200 50.64
177 sand lizard (alternate hap 2019) Lacerta agilis GCA_009819545.1_rLacAgi1.alt 12,660 1,429,379,209 2 120 34.27
178 sand lizard (primary hap 2019) Lacerta agilis GCF_009819535.1_rLacAgi1.pri 29 1,391,404,169 379 3,491,078 34.50
179 Sardinian treefrog (hap1 2023 refseq) Hyla sarda GCF_029499605.1_aHylSar1.hap1 3,474 4,142,159,359 2,297 459,227 64.33
180 Sardinian treefrog (hap2 2023) Hyla sarda GCA_029493135.1_aHylSar1.hap2 2,802 4,080,080,015 2,097 419,128 63.87
181 Schlegel's Japanese gecko Gekko japonicus GCF_001447785.1_Gekko_japonicus_V1.1 191,500 2,490,274,461 143,970 88,227,448 39.16
182 sea lamprey (alternate hap 2020) Petromyzon marinus GCA_010993595.1_kPetMar1.alt 4,064 841,632,067 11 24,549 49.81
183 sea lamprey (primary hap 2020) Petromyzon marinus GCF_010993605.1_kPetMar1.pri 1,434 1,089,050,413 930 15,013,687 50.62
184 sharpnose sevengill shark (hap1 2024) Heptranchias perlo GCA_035084215.1_sHepPer1.hap1 1,880 3,249,935,392 1,834 366,800 57.50
185 sharpnose sevengill shark (hap2 2024) Heptranchias perlo GCA_035084135.1_sHepPer1.hap2 1,194 3,059,754,027 1,695 339,000 55.71
186 Skyros wall lizard (rPodGai1.hap1.1 2024) Podarcis gaigeae GCA_964106915.1_rPodGai1.hap1.1 211 1,514,643,635 883 176,600 38.22
187 Skyros wall lizard (rPodGai1.hap2.1 2024) Podarcis gaigeae GCA_964106785.1_rPodGai1.hap2.1 127 1,422,314,362 783 156,600 37.52
188 smaller spotted catshark (alternate hap 2021) Scyliorhinus canicula GCA_902713625.2_sScyCan1.2_alternate_haplotype 26,649 3,867,000,599 6 319 51.57
189 smaller spotted catshark (v1.2 primary hap 2021 genbank) Scyliorhinus canicula GCA_902713615.2_sScyCan1.2 645 4,220,389,930 7,146 64,220,747 51.42
190 smalltooth sawfish (alternate hap 2019) Pristis pectinata GCA_009764485.1_sPriPec2.alt 10,892 1,694,166,684 0 0 38.34
191 smalltooth sawfish (primary hap 2019 refseq) Pristis pectinata GCF_009764475.1_sPriPec2.1.pri 172 2,267,840,987 698 20,562,876 54.48
192 snake C.aspera (hap2 2024) Candoia aspera GCF_035149785.1_rCanAsp1.hap2 149 1,530,810,380 101 20,200 33.56
193 Southern alligator lizard (San Diego HBS135686 primary hap 2024) Elgaria multicarinata webbii GCA_023053635.2_rElgMul1.1.pri 35 1,790,519,499 73 12,700 40.44
194 Southern dwarf chameleon (Gauteng JTBG20232 2024) Bradypodion ventrale GCA_035047345.1_BraVen1.1 113 2,373,187,502 22 2,189 54.44
195 Southern Pacific rattlesnake (HBS135844 alternate hap 2022) Crotalus helleri GCA_024509165.1_rCroOre1.a 340 1,628,461,744 34 782 44.44
196 Southern Pacific rattlesnake (HBS135844 primary hap 2022) Crotalus helleri GCA_024509115.1_rCroOre1.0.p 696 1,564,714,769 443 221,500 44.94
197 Southwestern pond turtle (HBS135687 alternate hap 2022) Actinemys pallida GCA_023634275.1_rActPal1.0.a 260 2,348,990,949 64 6,400 36.29
198 Southwestern pond turtle (HBS135687 primary hap 2022) Actinemys pallida GCA_023634205.1_rActPal1.0.p 53 2,326,928,347 53 5,300 36.13
199 spotted gar Lepisosteus oculatus GCF_000242695.1_LepOcu1 1,925 945,874,548 43,276 76,460,189 22.84
200 spotted ratfish (hap1 2024) Hydrolagus colliei GCA_035084065.1_sHydCol1.hap1 1,042 1,097,847,766 2,088 417,600 44.94
201 spotted ratfish (hap2 2024) Hydrolagus colliei GCA_035084275.1_sHydCol1.hap2 532 1,003,172,678 1,952 390,400 44.82
202 sterlet (maternal hap 2022 refseq) Acipenser ruthenus GCF_902713425.1_fAciRut3.2_maternal_haplotype 1,731 1,899,810,788 433 86,300 43.22
203 sterlet (paternal fAciRut3.2 2022) Acipenser ruthenus GCA_902713435.2_fAciRut3.2_paternal_haplotype 1,517 1,882,648,115 475 95,000 41.60
204 sterlet (v2 Gen_M01 2020) Acipenser ruthenus GCF_010645085.2_ASM1064508v2 3,368 1,825,187,678 6,251 1,247,812 43.29
205 Suwannee snapping turtle (hap1 2023) Macrochelys suwanniensis GCA_033296515.1_rMacSuw1.hap1 366 2,132,261,265 290 58,000 33.43
206 Suwannee snapping turtle (hap2 2023) Macrochelys suwanniensis GCA_033349115.1_rMacSuw1.hap2 199 1,937,254,095 361 72,200 32.82
207 tailed frog (A.truei hap1 2024) Ascaphus truei GCA_040206685.1_aAscTru1.hap1 3,549 3,722,616,900 6,020 1,204,076 55.73
208 tailed frog (A.truei hap2 2024) Ascaphus truei GCA_040206675.1_aAscTru1.hap2 2,779 3,660,446,095 6,023 1,204,703 55.25
209 thorny skate (alternate hap CabotCenter1 2020) Amblyraja radiata GCA_010909745.1_sAmbRad1.alt 21,992 1,462,441,988 3 94 57.78
210 thorny skate (primary hap CabotCenter1 v1.1 2020) Amblyraja radiata GCF_010909765.2_sAmbRad1.1.pri 957 2,558,784,953 3,753 190,972,533 52.28
211 three-toed box turtle Terrapene triunguis GCF_002925995.2_T_m_triunguis-2.0 48,497 2,562,212,628 53,635 131,526,270 31.74
212 tiger rattlesnake Crotalus tigris GCF_016545835.1_ASM1654583v1 4,228 1,612,002,213 0 0 42.93
213 tiny Cayenne caecilian Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 1,081 4,685,939,420 2,452 47,437,278 52.44
214 tiny Cayenne caecilian (alternate hap 2019) Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype 23,870 3,698,322,623 1 31 52.19
215 Townsend's dwarf sphaero (gecko TG3544 2022) Sphaerodactylus townsendi GCF_021028975.2_MPM_Stown_v2.3 1,742 1,810,846,735 2,590 229,288 38.60
216 tropical clawed frog Xenopus tropicalis GCF_000004195.4_UCB_Xtro_10.0 167 1,451,301,209 684 2,839,231 41.76
217 two-lined caecilian (alternate hap 2019) Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype 27,231 4,615,304,139 2 63 43.78
218 two-lined caecilian (v1.2 2021 genbank) Rhinatrema bivittatum GCA_901001135.2_aRhiBiv1.2 1,330 5,319,239,186 3,573 33,955,840 44.11
219 valley gartersnake (HBS 135685 alternate hap 2023) Thamnophis sirtalis fitchi GCA_029207655.1_rThaSir1.0.hap2 226 1,683,046,358 403 40,300 45.12
220 valley gartersnake (HBS 135685 primary hap 2023) Thamnophis sirtalis fitchi GCA_029207665.1_rThaSir1.0.hap1 413 1,621,019,271 446 44,600 46.30
221 viviparous/common lizard Zootoca vivipara GCF_011800845.1_UG_Zviv_1 25,252 1,464,300,591 51,275 43,421,287 34.22
222 West African lungfish Protopterus annectens GCF_019279795.1_PAN1.0 12,668 40,054,341,269 0 993,106,966 70.73
223 western fence lizard (IW3139 2022) Sceloporus occidentalis GCA_023333635.1_rSceOcc1.0.a 1,771 3,186,658,811 51 5,100 40.63
224 western fence lizard (IW3139 primary hap 2022) Sceloporus occidentalis GCA_023333645.1_rSceOcc1.0.p 608 2,856,356,971 51 5,100 37.86
225 western painted turtle (R12L10 2023) Chrysemys picta bellii GCF_011386835.1_ASM1138683v2 9,850 2,372,089,908 1,270 541,410 47.39
226 western painted turtle (v5 RCT428 2020) Chrysemys picta bellii GCF_000241765.5_Chrysemys_picta_BioNano-3.0.4 74,775 2,480,260,873 184,311 309,640,510 39.11
227 western red-tailed skink (HBS 135693 alternate hap 2022) Plestiodon gilberti rubricaudatus GCA_026170595.1_rPleGil1.0.hap2 39 1,571,222,493 15 1,500 36.98
228 western red-tailed skink (HBS 135693 primary hap 2022) Plestiodon gilberti rubricaudatus GCA_026170395.1_rPleGil1.0.hap1 50 1,447,229,999 12 1,200 37.05
229 western spadefoot toad (hap1 HBS 135690 2023) Spea hammondii GCA_029215705.1_aSpeHam1.0.hap1 479 1,142,014,214 198 19,800 41.85
230 western spadefoot toad (hap2 HBS 135690 2023) Spea hammondii GCA_029215755.1_aSpeHam1.0.hap2 351 1,155,539,324 190 19,000 42.27
231 western terrestrial garter snake (alternate hap 2019) Thamnophis elegans GCA_009769695.1_rThaEle1.alt 13,623 1,814,330,211 19 1,330,160 43.98
232 western terrestrial garter snake (primary hap 2019) Thamnophis elegans GCF_009769535.1_rThaEle1.pri 365 1,672,190,305 1,518 38,185,703 42.64
233 whale shark (14 2022 Squalomix) Rhincodon typus GCF_021869965.1_sRhiTyp1.1 16,684 2,880,448,384 95,208 241,885,584 34.15
234 whale shark (Ralph 2017 Emory U) Rhincodon typus GCF_001642345.1_ASM164234v2 57,334 2,931,599,576 900,650 917,010 38.86
235 whitespotted bambooshark Chiloscyllium plagiosum GCF_004010195.1_ASM401019v2 101,977 3,556,477,427 156,554 204,109,657 38.22
236 yellowpond turtle (Southern MM-2020 2021) Mauremys mutica GCF_020497125.1_ASM2049712v1 595 2,484,367,879 1,041 93,474,084 33.86
237 zebra shark (6-17 2022 Squalomix) Stegostoma tigrinum GCF_022316705.1_sSteFas1.1 1,266 2,771,866,316 87,372 171,787,940 32.94
238 zebra shark (hap1 2023 refseq) Stegostoma tigrinum GCF_030684315.1_sSteTig4.hap1 835 3,198,515,386 1,159 17,106,481 64.64
239 zebra shark (hap2 2023) Stegostoma tigrinum GCA_030684295.1_sSteTig4.hap2 933 3,603,936,669 1,203 12,512,178 59.53
TOTALS:total assembly count 239 2,056,824 654,772,578,024 5,177,950 7,673,215,735  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 214 assemblies assembly stats track stats
Mammals 558 assemblies assembly stats track stats
Birds 377 assemblies assembly stats track stats
Fishes 400 assemblies assembly stats track stats
other vertebrates 239 assemblies assembly stats track stats
Invertebrates 724 assemblies assembly stats track stats
Plants 301 assemblies assembly stats track stats
Fungi 680 assemblies assembly stats track stats
Viruses 281 assemblies assembly stats track stats
Bacteria 103 assemblies assembly stats track stats
legacy/superseded 452 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 952 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats