| 1 |
Abyssinian ground-hornbill (2019)[IGV] |
Bucorvus abyssinicus |
GCA_009769605.1_bBucAby1.pri |
SAMN12614799 |
PRJNA561887 |
2019-12-23 |
| 2 |
Abyssinian ground-hornbill (alternate hap 2019)[IGV] |
Bucorvus abyssinicus |
GCA_009769595.1_bBucAby1.alt |
SAMN12614799 |
PRJNA561886 |
2019-12-19 |
| 3 |
acorn woodpecker (bairdi alternate hap 2022)[IGV] |
Melanerpes formicivorus |
GCA_026170555.1_bMelFor1.0.a |
SAMN30523671 |
PRJNA875157 |
2022-11-14 |
| 4 |
acorn woodpecker (bairdi primary hap 2022)[IGV] |
Melanerpes formicivorus |
GCA_026170545.1_bMelFor1.0.p |
SAMN30523671 |
PRJNA875158 |
2022-11-14 |
| 5 |
acorn woodpecker (bairdi primary hap 2022)[IGV] |
Melanerpes formicivorus |
GCF_026170545.1_bMelFor1.0.p_v2 |
SAMN30523671 |
PRJNA875158 |
2022-11-14 |
| 6 |
Adelie penguin[IGV] |
Pygoscelis adeliae |
GCF_000699105.1_ASM69910v1 |
SAMN02596601 |
PRJNA235983 |
2014-06-06 |
| 7 |
African ostrich[IGV] |
Struthio camelus australis |
GCF_000698965.1_ASM69896v1 |
SAMN02316164 |
PRJNA212875 |
2014-06-06 |
| 8 |
African ostrich (bStrCam1hap1 2024)[IGV] |
Struthio camelus |
GCF_040807025.1_bStrCam1.hap1 |
SAMN42123890 |
PRJNA1129091 |
2024-07-22 |
| 9 |
African ostrich (bStrCam1hap2 2024)[IGV] |
Struthio camelus |
GCA_040807015.1_bStrCam1.hap2 |
SAMN42123890 |
PRJNA1129092 |
2024-07-22 |
| 10 |
American crow[IGV] |
Corvus brachyrhynchos |
GCF_000691975.1_ASM69197v1 |
SAMN02297499 |
PRJNA212869 |
2014-06-02 |
| 11 |
American flamingo (2019)[IGV] |
Phoenicopterus ruber ruber |
GCA_009819775.1_bPhoRub2.pri |
SAMN12614931 |
PRJNA561888 |
2019-12-31 |
| 12 |
American flamingo (alternate hap 2019)[IGV] |
Phoenicopterus ruber ruber |
GCA_009819805.1_bPhoRub2.alt |
SAMN12614931 |
PRJNA561889 |
2019-12-23 |
| 13 |
Anna's hummingbird (alternate hap BGI_N300 2018)[IGV] |
Calypte anna |
GCA_003957575.1_bCalAnn1_v1.h |
SAMN02265252 |
PRJNA489140 |
2018-12-20 |
| 14 |
Anna's hummingbird (BGI_N300 2019 refseq)[IGV] |
Calypte anna |
GCF_003957555.1_bCalAnn1_v1.p |
SAMN02265252 |
PRJNA489139 |
2019-05-16 |
| 15 |
bald eagle[IGV] |
Haliaeetus leucocephalus |
GCF_000737465.1_Haliaeetus_leucocephalus-4.0 |
SAMN02664716 |
PRJNA237821 |
2014-08-04 |
| 16 |
band-tailed pigeon (hap2 2024 genbank)[IGV] |
Patagioenas fasciata |
GCA_036971685.1_bPatFas1.hap2 |
SAMN40018840 |
PRJNA1078808 |
2024-03-06 |
| 17 |
band-tailed pigeon (hap2 2024 refseq)[IGV] |
Patagioenas fasciata |
GCF_036971685.1_bPatFas1.hap2 |
SAMN40018840 |
PRJNA1078808 |
2024-03-06 |
| 18 |
bar-tailed trogon[IGV] |
Apaloderma vittatum |
GCF_000703405.1_ASM70340v1 |
SAMN02318033 |
PRJNA212878 |
2014-06-16 |
| 19 |
barn owl (U. Lausanne 2021)[IGV] |
Tyto alba |
GCF_018691265.1_T.alba_DEE_v4.0 |
SAMN17526497 |
PRJNA694551 |
2021-06-03 |
| 20 |
Barn swallow (bHirRus1 v3 alternate hap 2021)[IGV] |
Hirundo rustica |
GCA_015227815.3_bHirRus1.alt.v3 |
SAMN14675488 |
PRJNA636191 |
2021-11-24 |
| 21 |
Barn swallow (bHirRus1 v3 primary hap 2021 refseq)[IGV] |
Hirundo rustica |
GCF_015227805.2_bHirRus1.pri.v3 |
SAMN14675488 |
PRJNA636192 |
2021-11-30 |
| 22 |
Bengalese finch[IGV] |
Lonchura striata |
GCF_005870125.1_lonStrDom2 |
SAMN11521339 |
PRJNA369279 |
2019-06-05 |
| 23 |
bird A.albertisi (hap1 2024)[IGV] |
Aegotheles albertisi |
GCA_039906565.1_bAegAlb1.hap1 |
SAMN41085506 |
PRJNA1104699 |
2024-05-31 |
| 24 |
bird A.albertisi (hap2 2024)[IGV] |
Aegotheles albertisi |
GCA_039906465.1_bAegAlb1.hap2 |
SAMN41085506 |
PRJNA1104700 |
2024-05-30 |
| 25 |
bird A.imberbis (Cuckoo-Finch-1a 21T00152 2023)[IGV] |
Anomalospiza imberbis |
GCF_031753505.1_ASM3175350v1 |
SAMN34535673 |
PRJNA966150 |
2023-09-22 |
| 26 |
bird E.chinensis (hap1 2024)[IGV] |
Excalfactoria chinensis |
GCA_039878515.1_bCotChi1.hap1 |
SAMN41253798 |
PRJNA1108769 |
2024-05-29 |
| 27 |
bird E.chinensis (hap2 2024)[IGV] |
Excalfactoria chinensis |
GCA_039878825.1_bCotChi1.hap2 |
SAMN41253798 |
PRJNA1108770 |
2024-05-31 |
| 28 |
bird N.grandis (bNycGra1 primary hap 2020)[IGV] |
Nyctibius grandis |
GCF_013368605.1_bNycGra1.pri |
SAMN12622411 |
PRJNA562020 |
2020-06-23 |
| 29 |
bird P.flaviventris (CSIRO_AGI_PZ_B2104156 2023)[IGV] |
Pezoporus flaviventris |
GCF_033815535.1_CSIRO_AGI_Pfla_v1 |
SAMN38123840 |
PRJNA1036367 |
2023-11-20 |
| 30 |
bird P.pipra (hap1 2024)[IGV] |
Pseudopipra pipra |
GCF_036250125.1_bDixPip1.hap1 |
SAMN32739894 |
PRJNA1057371 |
2024-01-31 |
| 31 |
bird Z.leucophrys gambelii (GWCS_2022_RI 2023)[IGV] |
Zonotrichia leucophrys gambelii |
GCF_028769735.1_RI_Zleu_2.0 |
SAMN31812169 |
PRJNA889240 |
2023-12-27 |
| 32 |
black swan (v2 Queensland, Australia AKBS03 2022)[IGV] |
Cygnus atratus |
GCF_013377495.2_CAtr_DNAZoo_HiC_assembly |
SAMN15332785 |
PRJNA640810 |
2022-08-03 |
| 33 |
black-capped chickadee (hap1 2023)[IGV] |
Poecile atricapillus |
GCF_030490865.1_bPoeAtr1.hap1 |
SAMN35074507 |
PRJNA972429 |
2023-07-18 |
| 34 |
black-capped chickadee (hap2 2023)[IGV] |
Poecile atricapillus |
GCA_030490855.1_bPoeAtr1.hap2 |
SAMN35074507 |
PRJNA972430 |
2023-07-18 |
| 35 |
black-headed gull (Kunming 2023)[IGV] |
Chroicocephalus ridibundus |
GCA_030820635.1_KIZ_Lrid_1.0 |
SAMN36812646 |
PRJNA1001583 |
2023-08-18 |
| 36 |
black-headed gull (primary hap 2024)[IGV] |
Chroicocephalus ridibundus |
GCA_963924245.1_bChrRid1.1 |
SAMEA112468038 |
PRJEB71951 |
2024-01-20 |
| 37 |
black-headed gull (primary hap 2024)[IGV] |
Chroicocephalus ridibundus |
GCF_963924245.1_bChrRid1.1 |
SAMEA112468038 |
PRJEB71951 |
2024-01-20 |
| 38 |
black-legged kittiwake (bRisTri1 2023 refseq)[IGV] |
Rissa tridactyla |
GCF_028500815.1_bRisTri1.patW.cur.20221130 |
SAMN32104255 |
PRJNA909853 |
2023-02-09 |
| 39 |
black-legged kittiwake (bRisTri1.mat 2023)[IGV] |
Rissa tridactyla |
GCA_028501385.1_bRisTri1.mat.cur.20221130 |
SAMN32104255 |
PRJNA909854 |
2023-02-10 |
| 40 |
black-throated flowerpiercer[IGV] |
Diglossa brunneiventris |
GCA_019023105.1_LSU_DiBr_2.0 |
SAMN17308174 |
PRJNA629984 |
2021-06-24 |
| 41 |
blackcap (alternate hap 2019)[IGV] |
Sylvia atricapilla |
GCA_009819715.1_bSylAtr1.alt |
SAMN12369542 |
PRJNA558065 |
2019-12-23 |
| 42 |
blackcap (primary hap 2019 refseq)[IGV] |
Sylvia atricapilla |
GCF_009819655.1_bSylAtr1.pri |
SAMN12369542 |
PRJNA558064 |
2019-12-31 |
| 43 |
blue tit[IGV] |
Cyanistes caeruleus |
GCF_002901205.1_cyaCae2 |
SAMN03734925 |
PRJNA284903 |
2018-01-26 |
| 44 |
blue-and-yellow macaw (hap1 2023)[IGV] |
Ara ararauna |
GCA_028858755.1_bAraAra1.hap1 |
SAMN33059336 |
PRJNA931362 |
2023-02-24 |
| 45 |
blue-and-yellow macaw (hap2 2023)[IGV] |
Ara ararauna |
GCA_028858555.1_bAraAra1.hap2 |
SAMN33059336 |
PRJNA931363 |
2023-02-24 |
| 46 |
blue-crowned manakin[IGV] |
Lepidothrix coronata |
GCF_001604755.1_Lepidothrix_coronata-1.0 |
SAMN04274560 |
PRJNA300662 |
2016-03-31 |
| 47 |
blue-fronted amazon (AMXYW 2021)[IGV] |
Amazona aestiva |
GCA_017639355.1_Aaes_hic |
SAMN17376699 |
PRJNA679636 |
2021-03-30 |
| 48 |
blue-fronted amazon (FVVF132 2015)[IGV] |
Amazona aestiva |
GCA_001420675.1_ASM142067v1 |
SAMN04014659 |
PRJNA294082 |
2015-10-30 |
| 49 |
Bourke's parrot (Australia Nb327-2 2023)[IGV] |
Neopsephotus bourkii |
GCF_033783945.1_CSIRO-AGI_Nbou_v1 |
SAMN37631362 |
PRJNA1022850 |
2023-11-17 |
| 50 |
Brazilian merganser (hap1 2024)[IGV] |
Mergus octosetaceus |
GCA_036873955.1_bMerOct1.hap1 |
SAMN39710078 |
PRJNA1072166 |
2024-02-26 |
| 51 |
Brazilian merganser (hap2 2024)[IGV] |
Mergus octosetaceus |
GCA_036850655.1_bMerOct1.hap2 |
SAMN39710078 |
PRJNA1072165 |
2024-02-26 |
| 52 |
bronzed cowbird (106 2024)[IGV] |
Molothrus aeneus |
GCF_037042795.1_BPBGC_Maene_1.0 |
SAMN38454154 |
PRJNA1045801 |
2024-03-07 |
| 53 |
brown eared-pheasant[IGV] |
Crossoptilon mantchuricum |
GCA_019593555.1_cma1 |
SAMN15899056 |
PRJNA659158 |
2021-08-13 |
| 54 |
brown headed cowbird (v1.1 BHLD 08-10-18 2022)[IGV] |
Molothrus ater |
GCF_012460135.2_BPBGC_Mater_1.1 |
SAMN14074414 |
PRJNA606972 |
2022-10-11 |
| 55 |
brown kiwi[IGV] |
Apteryx mantelli mantelli |
GCF_001039765.1_AptMant0 |
SAMEA2560515 |
PRJEB6383 |
2015-06-21 |
| 56 |
brown roatelo[IGV] |
Mesitornis unicolor |
GCF_000695765.1_ASM69576v1 |
SAMN02339298 |
PRJNA212899 |
2014-06-02 |
| 57 |
budgerigar (maternal 2020)[IGV] |
Melopsittacus undulatus |
GCA_012275265.1_bMelUnd1.mat |
SAMN12623090 |
PRJNA561964 |
2020-04-13 |
| 58 |
budgerigar (maternal Z 2020 refseq)[IGV] |
Melopsittacus undulatus |
GCF_012275295.1_bMelUnd1.mat.Z |
SAMN12623090 |
PRJNA612327 |
2020-04-13 |
| 59 |
budgerigar (paternal 2020)[IGV] |
Melopsittacus undulatus |
GCA_012275275.1_bMelUnd1.pat |
SAMN12623090 |
PRJNA561963 |
2020-04-13 |
| 60 |
budgerigar (v6.3 2021 WashU)[IGV] |
Melopsittacus undulatus |
GCF_000238935.1_Melopsittacus_undulatus_6.3 |
SAMN02981360 |
PRJNA72527 |
2012-01-02 |
| 61 |
burrowing owl[IGV] |
Athene cunicularia |
GCF_003259725.1_athCun1 |
SAMN08961563 |
PRJNA431202 |
2018-06-21 |
| 62 |
California black rail (168171201 alternate hap 2022)[IGV] |
Laterallus jamaicensis coturniculus |
GCA_022605925.1_bLatJam1.0.a |
SAMN24505262 |
PRJNA794173 |
2022-03-17 |
| 63 |
California black rail (168171201 primary hap 2022)[IGV] |
Laterallus jamaicensis coturniculus |
GCA_022605575.1_bLatJam1.0.p |
SAMN24505262 |
PRJNA794174 |
2022-03-17 |
| 64 |
California condor (v2 813 2022 refseq)[IGV] |
Gymnogyps californianus |
GCF_018139145.2_ASM1813914v2 |
SAMN18477433 |
PRJNA718609 |
2022-09-01 |
| 65 |
California quail (MVZ:Bird:193975 alternate hap 2022)[IGV] |
Callipepla californica brunnescens |
GCA_023055725.1_bCalCai1.0.a |
SAMN26894057 |
PRJNA819181 |
2022-04-19 |
| 66 |
California quail (MVZ:Bird:193975 primary hap 2022)[IGV] |
Callipepla californica brunnescens |
GCA_023055505.1_bCalCai1.0.p |
SAMN26894057 |
PRJNA819182 |
2022-05-05 |
| 67 |
California towhee (CALT 2023)[IGV] |
Melozone crissalis |
GCF_028551555.1_PUWL_Pcris_2 |
SAMN32379461 |
PRJNA915193 |
2023-02-08 |
| 68 |
Canada goose (SJ_97 2019)[IGV] |
Branta canadensis |
GCA_006130075.1_GSC_cangoose_1.0 |
SAMN11031539 |
PRJNA524684 |
2019-06-05 |
| 69 |
carmine bee-eater (2019)[IGV] |
Merops nubicus |
GCA_009819595.1_bMerNub1.pri |
SAMN12621035 |
PRJNA561894 |
2019-12-31 |
| 70 |
carmine bee-eater alternate hap pseudohaplotype 2019)[IGV] |
Merops nubicus |
GCA_009819585.1_bMerNub1.alt |
SAMN12621035 |
PRJNA561895 |
2019-12-23 |
| 71 |
chaffinch (primary hap 2023)[IGV] |
Fringilla coelebs |
GCA_963513975.1_bFriCoe1.1 |
SAMEA9359753 |
PRJEB66368 |
2023-09-28 |
| 72 |
chicken (Cobb bGalGal5 alternate hap 2022)[IGV] |
Gallus gallus |
GCA_027408205.1_bGalGal5.alt |
SAMN28017485 |
PRJNA838371 |
2022-12-27 |
| 73 |
chicken (Cobb bGalGal5 primary hap 2022)[IGV] |
Gallus gallus |
GCA_027408225.1_bGalGal5.pri |
SAMN28017485 |
PRJNA838370 |
2022-12-28 |
| 74 |
chicken (GRCg6a 2018)[IGV] |
Gallus gallus |
GCF_000002315.6_GRCg6a |
SAMN02981218 |
PRJNA13342 |
2018-03-27 |
| 75 |
chicken (Huxu 2023)[IGV] |
Gallus gallus |
GCA_024206055.2_ASM2420605v2 |
SAMN20717417 |
PRJNA693184 |
2023-02-09 |
| 76 |
chicken (Ross bGalGal4 alternate hap 2022)[IGV] |
Gallus gallus |
GCA_027408255.1_bGalGal4.alt |
SAMN28017486 |
PRJNA838368 |
2022-12-27 |
| 77 |
chicken (Ross bGalGal4 primary hap 2023)[IGV] |
Gallus gallus |
GCA_027557775.1_bGalGal4.pri |
SAMN28017486 |
PRJNA838369 |
2023-01-03 |
| 78 |
chicken white leghorn layer X broiler (broiler haplotype 2021 v2 2021)[IGV] |
Gallus gallus |
GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b |
SAMN15960293 |
PRJNA660757 |
2021-01-19 |
| 79 |
chicken white leghorn layer X broiler (leghorn haplotype v2 2021)[IGV] |
Gallus gallus |
GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w |
SAMN15960293 |
PRJNA660758 |
2021-10-01 |
| 80 |
Chilean tinamou[IGV] |
Nothoprocta perdicaria |
GCF_003342845.1_notPer1 |
SAMN08476459 |
PRJNA433110 |
2018-07-26 |
| 81 |
chimney swift (M959 v1.1 2014)[IGV] |
Chaetura pelagica |
GCF_000747805.2_ChaPel_1.1 |
SAMN03018471 |
PRJNA210808 |
2014-09-04 |
| 82 |
chuck-will's-widow (BGI_N321 v2 2014)[IGV] |
Antrostomus carolinensis |
GCF_000700745.2_ASM70074v2 |
SAMN02318612 |
PRJNA212888 |
2014-06-10 |
| 83 |
collared flycatcher[IGV] |
Ficedula albicollis |
GCF_000247815.1_FicAlb1.5 |
SAMN02981387 |
PRJNA75089 |
2013-06-27 |
| 84 |
common buzzard (bButBut1.hap1.1 2024)[IGV] |
Buteo buteo |
GCA_964188355.1_bButBut1.hap1.1 |
SAMEA114594453 |
PRJEB76733 |
2024-06-21 |
| 85 |
common buzzard (bButBut1.hap2.1 2024)[IGV] |
Buteo buteo |
GCA_964188375.1_bButBut1.hap2.1 |
SAMEA114594453 |
PRJEB76732 |
2024-06-19 |
| 86 |
common canary (domestic yellow sc_yellow_7_cibi 2019)[IGV] |
Serinus canaria |
GCF_007115625.1_cibio_Scana_2019 |
SAMN12017177 |
PRJNA548289 |
2019-07-18 |
| 87 |
common canary (serCan28SL12 2022)[IGV] |
Serinus canaria |
GCF_022539315.1_serCan2020 |
SAMN25990113 |
PRJNA807488 |
2022-08-25 |
| 88 |
common cuckoo (bCucCan1 alternate hap 2021)[IGV] |
Cuculus canorus |
GCA_017976305.1_bCucCan1.alt |
SAMN12629508 |
PRJNA562016 |
2021-04-15 |
| 89 |
common cuckoo (bCucCan1 primary hap 2021 refseq)[IGV] |
Cuculus canorus |
GCF_017976375.1_bCucCan1.pri |
SAMN12629508 |
PRJNA562015 |
2021-04-15 |
| 90 |
common goldeneye (primary hap 2024)[IGV] |
Bucephala clangula |
GCA_964059595.1_bBucCla1.1 |
SAMEA112468123 |
PRJEB76092 |
2024-06-06 |
| 91 |
common mallard (Pekin duck 2017)[IGV] |
Anas platyrhynchos platyrhynchos |
GCA_002743455.1_CAU_duck1.0 |
SAMN07569716 |
PRJNA403935 |
2017-11-03 |
| 92 |
common moorhen (bGalChl1.hap1.1 2024)[IGV] |
Gallinula chloropus |
GCA_964237585.1_bGalChl1.hap1.1 |
SAMEA113398958 |
PRJEB79218 |
2024-08-31 |
| 93 |
common moorhen (bGalChl1.hap2.1 2024)[IGV] |
Gallinula chloropus |
GCA_964237395.1_bGalChl1.hap2.1 |
SAMEA113398958 |
PRJEB79219 |
2024-08-29 |
| 94 |
common myna (bArcTri1 alternate hap 2023)[IGV] |
Acridotheres tristis |
GCA_027559525.1_bAcrTri1.alt |
SAMN28454388 |
PRJNA839506 |
2023-01-03 |
| 95 |
common myna (bArcTri1 primary hap 2023)[IGV] |
Acridotheres tristis |
GCA_027559615.1_bAcrTri1.pri |
SAMN28454388 |
PRJNA839507 |
2023-01-09 |
| 96 |
common pochard (bAytFer1.hap1.1 2024)[IGV] |
Aythya ferina |
GCA_964211825.1_bAytFer1.hap1.1 |
SAMEA112468034 |
PRJEB78494 |
2024-07-31 |
| 97 |
common pochard (bAytFer1.hap2.1 2024)[IGV] |
Aythya ferina |
GCA_964211795.1_bAytFer1.hap2.1 |
SAMEA112468034 |
PRJEB78493 |
2024-07-30 |
| 98 |
common starling[IGV] |
Sturnus vulgaris |
GCF_001447265.1_Sturnus_vulgaris-1.0 |
SAMN04029017 |
PRJNA293892 |
2015-11-20 |
| 99 |
common swift (bApuApu2 alternate hap 2021)[IGV] |
Apus apus |
GCA_020740585.1_bApuApu2.alt.cur |
SAMN22785356 |
PRJNA776337 |
2021-11-03 |
| 100 |
common swift (bApuApu2 primary hap 2021 refseq)[IGV] |
Apus apus |
GCF_020740795.1_bApuApu2.pri.cur |
SAMN22785356 |
PRJNA776336 |
2021-11-04 |
| 101 |
common tern (2019)[IGV] |
Sterna hirundo |
GCA_009819605.1_bSteHir1.pri |
SAMN12369541 |
PRJNA558062 |
2019-12-31 |
| 102 |
common tern (alternate hap 2019)[IGV] |
Sterna hirundo |
GCA_009819645.1_bSteHir1.alt |
SAMN12369541 |
PRJNA558063 |
2019-12-23 |
| 103 |
common yellowthroat (2019)[IGV] |
Geothlypis trichas |
GCA_009764595.1_bGeoTri1.pri |
SAMN12631222 |
PRJNA589703 |
2019-12-19 |
| 104 |
common yellowthroat (alternate hap 2019)[IGV] |
Geothlypis trichas |
GCA_009764545.1_bGeoTri1.alt |
SAMN12631222 |
PRJNA589704 |
2019-12-18 |
| 105 |
Cory's shearwater (bCalBor7.hap1.1 2024)[IGV] |
Calonectris borealis |
GCA_964195595.1_bCalBor7.hap1.1 |
SAMEA114294356 |
PRJEB77030 |
2024-06-30 |
| 106 |
Cory's shearwater (bCalBor7.hap2.1 2024)[IGV] |
Calonectris borealis |
GCA_964196065.1_bCalBor7.hap2.1 |
SAMEA114294356 |
PRJEB77029 |
2024-06-30 |
| 107 |
crested ibis (BGI_Y956 2014)[IGV] |
Nipponia nippon |
GCF_000708225.1_ASM70822v1 |
SAMN02596464 |
PRJNA232572 |
2014-06-16 |
| 108 |
cuckoo roller (BGI_N330 2014)[IGV] |
Leptosomus discolor |
GCF_000691785.1_ASM69178v1 |
SAMN02333687 |
PRJNA212897 |
2014-05-23 |
| 109 |
cuckoo roller (hap1 2023)[IGV] |
Leptosomus discolor |
GCA_034619455.1_bLepDis1.hap1 |
SAMN37284216 |
PRJNA1013356 |
2023-12-27 |
| 110 |
cuckoo roller (hap2 2023)[IGV] |
Leptosomus discolor |
GCA_034619465.1_bLepDis1.hap2 |
SAMN37284216 |
PRJNA1013355 |
2023-12-27 |
| 111 |
Dalmatian pelican (alternate hap 2023)[IGV] |
Pelecanus crispus |
GCA_030449815.1_bPelCri1.alt |
SAMN35784560 |
PRJNA984932 |
2023-07-13 |
| 112 |
Dalmatian pelican (BGI_N334 2014)[IGV] |
Pelecanus crispus |
GCF_000687375.1_ASM68737v1 |
SAMN02339887 |
PRJNA212901 |
2014-05-09 |
| 113 |
Dalmatian pelican (primary hap 2023)[IGV] |
Pelecanus crispus |
GCA_030463565.1_bPelCri1.pri |
SAMN35784560 |
PRJNA984931 |
2023-07-18 |
| 114 |
Domestic goose (bAnsAns1.hap1.1 2024)[IGV] |
Anser anser |
GCA_964211835.1_bAnsAns1.hap1.1 |
SAMEA113398854 |
PRJEB78491 |
2024-07-31 |
| 115 |
Domestic goose (bAnsAns1.hap2.1 2024)[IGV] |
Anser anser |
GCA_964211785.1_bAnsAns1.hap2.1 |
SAMEA113398854 |
PRJEB78492 |
2024-07-31 |
| 116 |
Downy woodpecker (alternate hap 2020)[IGV] |
Dryobates pubescens |
GCA_014839825.1_bDryPub1.alt |
SAMN12629497 |
PRJNA561992 |
2020-09-30 |
| 117 |
Downy woodpecker (primary hap 2020)[IGV] |
Dryobates pubescens |
GCF_014839835.1_bDryPub1.pri |
SAMN12629497 |
PRJNA561991 |
2020-10-02 |
| 118 |
East African grey crowned-crane[IGV] |
Balearica regulorum gibbericeps |
GCF_000709895.1_ASM70989v1 |
SAMN02318095 |
PRJNA212879 |
2014-06-25 |
| 119 |
East African grey crowned-crane (alternate hap 2020)[IGV] |
Balearica regulorum gibbericeps |
GCA_011004865.1_bBalReg1.alt |
SAMN12615749 |
PRJNA561891 |
2020-02-24 |
| 120 |
East African grey crowned-crane (bBalReg1 2020)[IGV] |
Balearica regulorum gibbericeps |
GCA_011004875.1_bBalReg1.pri |
SAMN12615749 |
PRJNA561890 |
2020-03-05 |
| 121 |
Eastern black-eared wheatear (GR-GAL-2019-014 2023)[IGV] |
Oenanthe melanoleuca |
GCF_029582105.1_OMel1.0 |
SAMN33408179 |
PRJNA937434 |
2023-04-06 |
| 122 |
emperor penguin[IGV] |
Aptenodytes forsteri |
GCF_000699145.1_ASM69914v1 |
SAMN02596600 |
PRJNA235982 |
2014-06-06 |
| 123 |
emu (2018)[IGV] |
Dromaius novaehollandiae |
GCF_003342905.1_droNov1 |
SAMN08476457 |
PRJNA433110 |
2018-07-26 |
| 124 |
emu (hap1 2024)[IGV] |
Dromaius novaehollandiae |
GCF_036370855.1_bDroNov1.hap1 |
SAMN39262816 |
PRJNA1061216 |
2024-02-26 |
| 125 |
emu (hap2 2024)[IGV] |
Dromaius novaehollandiae |
GCA_036417515.1_bDroNov1.hap2 |
SAMN39262816 |
PRJNA1061217 |
2024-02-26 |
| 126 |
emu (v2 ZJU1.0 2023)[IGV] |
Dromaius novaehollandiae |
GCA_016128335.2_ZJU2.0 |
SAMN15183959 |
PRJNA638233 |
2023-01-13 |
| 127 |
Eurasian collared-dove (bStrDea1.hap1.1 2024)[IGV] |
Streptopelia decaocto |
GCA_964273445.1_bStrDea1.hap1.1 |
SAMEA113398962 |
PRJEB80767 |
2024-10-04 |
| 128 |
Eurasian collared-dove (bStrDea1.hap2.1 2024)[IGV] |
Streptopelia decaocto |
GCA_964273585.1_bStrDea1.hap2.1 |
SAMEA113398962 |
PRJEB80768 |
2024-10-04 |
| 129 |
Eurasian crane (hap1 2024)[IGV] |
Grus grus |
GCA_964106855.1_bGruGru1.hap1.1 |
SAMEA113398837 |
PRJEB75999 |
2024-06-06 |
| 130 |
Eurasian curlew (hap1 2024)[IGV] |
Numenius arquata |
GCA_964106895.1_bNumArq3.hap1.1 |
SAMEA112693994 |
PRJEB75987 |
2024-06-06 |
| 131 |
Eurasian curlew (hap2 2024)[IGV] |
Numenius arquata |
GCA_964059295.1_bNumArq3.hap2.1 |
SAMEA112693994 |
PRJEB75988 |
2024-05-29 |
| 132 |
Eurasian nightjar (alternate hap 2021)[IGV] |
Caprimulgus europaeus |
GCA_907165095.1_bCapEur3.1_alternate_haplotype |
SAMEA7524394 |
PRJEB44541 |
2021-05-15 |
| 133 |
Eurasian nightjar (primary hap 2021)[IGV] |
Caprimulgus europaeus |
GCA_907165065.1_bCapEur3.1 |
SAMEA7524394 |
PRJEB44540 |
2021-05-17 |
| 134 |
Eurasian tree sparrow[IGV] |
Passer montanus |
GCF_014805655.1_ASM1480565v1 |
SAMN07998528 |
PRJNA417520 |
2020-09-30 |
| 135 |
European golden plover (bPluApr1 primary hap 2021)[IGV] |
Pluvialis apricaria |
GCA_017639485.1_bPluApr1.pri |
SAMN18353970 |
PRJNA715924 |
2021-03-30 |
| 136 |
European robin (alternate hap 2021)[IGV] |
Erithacus rubecula |
GCA_903797565.2_bEriRub2.2_alternate_haplotype |
SAMEA4760689 |
PRJEB38657 |
2021-03-21 |
| 137 |
European robin (primary hap 2021)[IGV] |
Erithacus rubecula |
GCA_903797595.2_bEriRub2.2 |
SAMEA4760689 |
PRJEB38658 |
2021-05-03 |
| 138 |
European shag (alternate hap 2023)[IGV] |
Phalacrocorax aristotelis |
GCA_949628205.1_bGulAri2.1_alternate_haplotype |
SAMEA10059652 |
PRJEB60538 |
2023-04-09 |
| 139 |
European shag (primary hap 2023)[IGV] |
Phalacrocorax aristotelis |
GCA_949628215.1_bGulAri2.1 |
SAMEA10059652 |
PRJEB60539 |
2023-04-08 |
| 140 |
European turtle dove (v1.2 2021)[IGV] |
Streptopelia turtur |
GCA_901699155.2_bStrTur1.2 |
SAMEA994735 |
PRJEB32724 |
2021-05-17 |
| 141 |
European turtle dove (v1.2 alternate hap 2021)[IGV] |
Streptopelia turtur |
GCA_901699165.2_bStrTur1.2_alternate_haplotype |
SAMEA994735 |
PRJEB32725 |
2021-04-15 |
| 142 |
Eurpoean golden plover (bPluApr1 alternate hap 2021)[IGV] |
Pluvialis apricaria |
GCA_017639475.1_bPluApr1.alt |
SAMN18353970 |
PRJNA715923 |
2021-03-30 |
| 143 |
garden warbler (bSylBor1 alternate hap 2020)[IGV] |
Sylvia borin |
GCA_014839765.1_bSylBor1.alt |
SAMN12618613 |
PRJNA561946 |
2020-09-30 |
| 144 |
garden warbler (bSylBor1 primary hap 2020)[IGV] |
Sylvia borin |
GCA_014839755.1_bSylBor1.pri |
SAMN12618613 |
PRJNA561945 |
2020-10-02 |
| 145 |
golden eagle (v1.4 2021)[IGV] |
Aquila chrysaetos chrysaetos |
GCF_900496995.4_bAquChr1.4 |
SAMEA994725 |
PRJEB27699 |
2021-03-26 |
| 146 |
golden eagle (v1.4 alternate hap 2021)[IGV] |
Aquila chrysaetos chrysaetos |
GCA_902153765.2_bAquChr1.4_alternate_haplotype |
SAMEA994725 |
PRJEB33298 |
2021-03-26 |
| 147 |
golden pheasant[IGV] |
Chrysolophus pictus |
GCA_003413605.1_Chrysolophus_pictus_GenomeV1.0 |
SAMN02980944 |
PRJNA257945 |
2018-08-20 |
| 148 |
golden-collared manakin[IGV] |
Manacus vitellinus |
GCF_001715985.3_ASM171598v3 |
SAMN02299332 |
PRJNA335611 |
2019-07-03 |
| 149 |
great cormorant (BGI_N336 2014)[IGV] |
Phalacrocorax carbo |
GCF_000708925.1_ASM70892v1 |
SAMN02339889 |
PRJNA212903 |
2014-06-17 |
| 150 |
great cormorant (primary hap 2024)[IGV] |
Phalacrocorax carbo |
GCA_963921805.1_bPhaCar2.1 |
SAMEA8228692 |
PRJEB71801 |
2024-02-09 |
| 151 |
great cormorant (primary hap 2024)[IGV] |
Phalacrocorax carbo |
GCF_963921805.1_bPhaCar2.1 |
SAMEA8228692 |
PRJEB71801 |
2024-02-09 |
| 152 |
great potoo (bNycGra1 alternate hap 2020)[IGV] |
Nyctibius grandis |
GCA_013368595.1_bNycGra1.alt |
SAMN12622411 |
PRJNA562021 |
2020-06-23 |
| 153 |
great potoo (bNycGra1 primary hap 2020)[IGV] |
Nyctibius grandis |
GCA_013368605.1_bNycGra1.pri |
SAMN12622411 |
PRJNA562020 |
2020-06-23 |
| 154 |
great tit[IGV] |
Parus major |
GCF_001522545.3_Parus_major1.1 |
SAMN03083587 |
PRJNA208335 |
2019-01-15 |
| 155 |
greater honeyguide (239-I01 2023)[IGV] |
Indicator indicator |
GCF_027791375.1_UM_Iind_1.1 |
SAMN31686289 |
PRJNA900296 |
2023-01-13 |
| 156 |
greater prairie chicken[IGV] |
Tympanuchus cupido pinnatus |
GCA_001870855.1_T_cupido_pinnatus_GPC_3440_v1 |
SAMN05433571 |
PRJNA330991 |
2016-11-07 |
| 157 |
greater rhea[IGV] |
Rhea americana |
GCA_003343005.1_rheAme1 |
SAMN08476460 |
PRJNA433110 |
2018-07-26 |
| 158 |
greater sage-grouse[IGV] |
Centrocercus urophasianus |
GCF_019232065.1_USGS_Curo_1.0 |
SAMN20124253 |
PRJNA734947 |
2021-07-15 |
| 159 |
green peafowl[IGV] |
Pavo muticus |
GCA_016647715.1_ASM1664771v1 |
SAMN15486085 |
PRJNA644939 |
2021-01-15 |
| 160 |
grey parrot (MU2MI4XJKV 2020)[IGV] |
Psittacus erithacus |
GCA_009867235.1_ASM986723v1 |
SAMN12165726 |
PRJNA551771 |
2020-01-14 |
| 161 |
ground parrot (Strahan ANWC-B61680 2023)[IGV] |
Pezoporus wallicus |
GCF_028554395.1_APGP_CSIRO_Pwel_v1 |
SAMN32236640 |
PRJNA912258 |
2023-02-08 |
| 162 |
gyrfalcon (bFalRus1 alternate hap 2020)[IGV] |
Falco rusticolus |
GCA_015220155.1_bFalRus1.alt |
SAMN12629496 |
PRJNA561989 |
2020-11-02 |
| 163 |
gyrfalcon (bFalRus1 primary hap 2020)[IGV] |
Falco rusticolus |
GCF_015220075.1_bFalRus1.pri |
SAMN12629496 |
PRJNA561988 |
2020-11-03 |
| 164 |
Harpy eagle (bHarHar1 alternate hap 2022)[IGV] |
Harpia harpyja |
GCA_026419925.1_bHarHar1 |
SAMN31530492 |
PRJNA896140 |
2022-11-25 |
| 165 |
Harpy eagle (primary hap 2022 refseq)[IGV] |
Harpia harpyja |
GCF_026419915.1_bHarHar1_primary_haplotype |
SAMN31530492 |
PRJNA896141 |
2022-11-27 |
| 166 |
Hawaiian crow (bCorHaw1 alternate hap 2021)[IGV] |
Corvus hawaiiensis |
GCA_020740675.1_bCorHaw1.alt.cur |
SAMN22550278 |
PRJNA774316 |
2021-11-03 |
| 167 |
Hawaiian crow (bCorHaw1 primary hap 2021 refseq)[IGV] |
Corvus hawaiiensis |
GCF_020740725.1_bCorHaw1.pri.cur |
SAMN22550278 |
PRJNA774314 |
2021-11-04 |
| 168 |
helmeted guineafowl[IGV] |
Numida meleagris |
GCF_002078875.1_NumMel1.0 |
SAMN05969731 |
PRJNA352321 |
2017-06-01 |
| 169 |
hoatzin (BGI_N306 2014)[IGV] |
Opisthocomus hoazin |
GCF_000692075.1_ASM69207v1 |
SAMN02302474 |
PRJNA212873 |
2014-05-19 |
| 170 |
hoatzin (hap1 2023)[IGV] |
Opisthocomus hoazin |
GCA_030867145.1_bOpiHoa1.hap1 |
SAMN37055462 |
PRJNA1007258 |
2023-08-24 |
| 171 |
hoatzin (hap2 2023)[IGV] |
Opisthocomus hoazin |
GCA_030867165.1_bOpiHoa1.hap2 |
SAMN37055462 |
PRJNA1007257 |
2023-08-24 |
| 172 |
hooded crow (v6 S_Up_H32 2022)[IGV] |
Corvus cornix cornix |
GCF_000738735.6_ASM73873v6 |
SAMN02143031 |
PRJNA192205 |
2022-04-01 |
| 173 |
house finch (bHaeMex1 alternate hap 2022)[IGV] |
Haemorhous mexicanus |
GCA_027406555.1_bHaeMex1.alt |
SAMN28453576 |
PRJNA839498 |
2022-12-27 |
| 174 |
house finch (bHaeMex1 primary hap 2022 refseq)[IGV] |
Haemorhous mexicanus |
GCF_027477595.1_bHaeMex1.pri |
SAMN28453576 |
PRJNA839499 |
2022-12-29 |
| 175 |
house sparrow (hap1 2024)[IGV] |
Passer domesticus |
GCA_036417665.1_bPasDom1.hap1 |
SAMN39255856 |
PRJNA1064421 |
2024-02-07 |
| 176 |
house sparrow (hap1 2024)[IGV] |
Passer domesticus |
GCF_036417665.1_bPasDom1.hap1 |
SAMN39255856 |
PRJNA1064421 |
2024-02-07 |
| 177 |
House sparrow (hap2 2024)[IGV] |
Passer domesticus |
GCA_036417895.1_bPasDom1.hap2 |
SAMN39255856 |
PRJNA1064420 |
2024-02-07 |
| 178 |
Humboldt's penguin (bSphHub1 alternate hap 2022)[IGV] |
Spheniscus humboldti |
GCA_027474345.1_bSphHub1.alt |
SAMN28408465 |
PRJNA838344 |
2022-12-27 |
| 179 |
Humboldt's penguin (bSphHub1 primary hap 2022)[IGV] |
Spheniscus humboldti |
GCA_027474245.1_bSphHub1.pri |
SAMN28408465 |
PRJNA838343 |
2022-12-28 |
| 180 |
hyacinth macaw (LEKZKR9XQ3 2022)[IGV] |
Anodorhynchus hyacinthinus |
GCA_009936445.2_ASM993644v2 |
SAMN09689126 |
PRJNA481562 |
2022-07-21 |
| 181 |
jackdaw[IGV] |
Coloeus monedula |
GCA_013407035.1_ASM1340703v1 |
SAMN14646012 |
PRJNA626609 |
2020-07-13 |
| 182 |
Japanese quail[IGV] |
Coturnix japonica |
GCF_001577835.2_Coturnix_japonica_2.1 |
SAMN03989050 |
PRJNA292031 |
2016-03-01 |
| 183 |
kagu (bRhyJub1 alternate hap 2023)[IGV] |
Rhynochetos jubatus |
GCA_027595965.1_bRhyJub1.alt |
SAMN31802033 |
PRJNA916496 |
2023-01-06 |
| 184 |
kagu (bRhyJub1 primary hap 2023)[IGV] |
Rhynochetos jubatus |
GCA_027574665.1_bRhyJub1.pri |
SAMN31802033 |
PRJNA916495 |
2023-01-09 |
| 185 |
kakapo (Jane alternate hap 2019)[IGV] |
Strigops habroptila |
GCA_004011185.1_bStrHab1_v1.h |
SAMN09948751 |
PRJNA489134 |
2019-01-10 |
| 186 |
kakapo (Jane v2 2020 refseq)[IGV] |
Strigops habroptila |
GCF_004027225.2_bStrHab1.2.pri |
SAMN09948751 |
PRJNA489135 |
2020-03-04 |
| 187 |
kea[IGV] |
Nestor notabilis |
GCF_000696875.1_ASM69687v1 |
SAMN02339299 |
PRJNA212900 |
2014-06-05 |
| 188 |
killdeer[IGV] |
Charadrius vociferus |
GCF_000708025.1_ASM70802v2 |
SAMN02296710 |
PRJNA212867 |
2014-08-05 |
| 189 |
king vulture (hap1 2024)[IGV] |
Sarcoramphus papa |
GCA_037962945.1_bSarPap1.hap1 |
SAMN40647026 |
PRJNA1093106 |
2024-04-04 |
| 190 |
king vulture (hap2 2024)[IGV] |
Sarcoramphus papa |
GCA_037950955.1_bSarPap1.hap2 |
SAMN40647026 |
PRJNA1093107 |
2024-04-04 |
| 191 |
lammergeier (bGypBar2 alternate hap 2023)[IGV] |
Gypaetus barbatus |
GCA_028017155.1_bGypBar2.alt |
SAMN32256411 |
PRJNA912842 |
2023-01-26 |
| 192 |
lammergeier (bGypBar2 primary hap 2023)[IGV] |
Gypaetus barbatus |
GCA_028022735.1_bGypBar2.pri |
SAMN32256411 |
PRJNA912841 |
2023-01-31 |
| 193 |
lance-tailed manakin (2020)[IGV] |
Chiroxiphia lanceolata |
GCF_009829145.1_bChiLan1.pri |
SAMN12620979 |
PRJNA561943 |
2020-01-03 |
| 194 |
lance-tailed manakin (alternate hap 2020)[IGV] |
Chiroxiphia lanceolata |
GCA_009829205.1_bChiLan1.alt |
SAMN12620979 |
PRJNA561944 |
2020-01-03 |
| 195 |
lanner falcon (bFalBia1 alternate hap 2022)[IGV] |
Falco biarmicus |
GCA_023634305.1_bFalBia1.alt |
SAMN28688289 |
PRJNA842827 |
2022-06-01 |
| 196 |
lanner falcon (bFalBia1 primary hap 2022 refseq)[IGV] |
Falco biarmicus |
GCF_023638135.1_bFalBia1.pri |
SAMN28688289 |
PRJNA842826 |
2022-06-02 |
| 197 |
lesser black-backed gull (primary hap 2024)[IGV] |
Larus fuscus |
GCA_963932225.1_bLarFus1.1 |
SAMEA112468039 |
PRJEB72328 |
2024-02-07 |
| 198 |
lesser kestrel (alternate hap 2021)[IGV] |
Falco naumanni |
GCA_017639645.1_bFalNau1.mat |
SAMN16870685 |
PRJNA702665 |
2021-03-30 |
| 199 |
lesser kestrel (v2 2021)[IGV] |
Falco naumanni |
GCF_017639655.2_bFalNau1.pat |
SAMN16870685 |
PRJNA702666 |
2021-03-30 |
| 200 |
lesser prairie-chicken (F22 2022)[IGV] |
Tympanuchus pallidicinctus |
GCF_026119805.1_pur_lepc_1.0 |
SAMN31408225 |
PRJNA893009 |
2022-11-10 |
| 201 |
lesser rhea (206185 2018)[IGV] |
Rhea pennata |
GCA_003342835.1_rhePen1 |
SAMN08476461 |
PRJNA433110 |
2018-07-26 |
| 202 |
lesser rhea (bPtePen1 alternate hap 2023)[IGV] |
Rhea pennata |
GCA_028389885.1_bPtePen1.alt |
SAMN32606345 |
PRJNA918802 |
2023-02-01 |
| 203 |
lesser rhea (bPtePen1 primary hap 2023 refseq)[IGV] |
Rhea pennata |
GCF_028389875.1_bPtePen1.pri |
SAMN32606345 |
PRJNA918801 |
2023-02-06 |
| 204 |
little egret[IGV] |
Egretta garzetta |
GCF_000687185.1_ASM68718v1 |
SAMN02596466 |
PRJNA232959 |
2014-05-09 |
| 205 |
long-tailed duck (primary hap 2024)[IGV] |
Clangula hyemalis |
GCA_963989345.1_bClaHye2.1 |
SAMEA112468035 |
PRJEB73781 |
2024-03-14 |
| 206 |
long-tailed hermit (PSU5 alternate hap 2022)[IGV] |
Phaethornis superciliosus |
GCA_023637925.1_DD_ASM_B1a |
SAMN23532249 |
PRJNA785156 |
2022-06-01 |
| 207 |
long-tailed hermit (PSU5 primary hap 2022)[IGV] |
Phaethornis superciliosus |
GCA_023637945.1_DD_ASM_B1 |
SAMN23532249 |
PRJNA785144 |
2022-06-01 |
| 208 |
Macqueen's bustard (BGI_N324 2014)[IGV] |
Chlamydotis macqueenii |
GCF_000695195.1_ASM69519v1 |
SAMN02324157 |
PRJNA212891 |
2014-06-02 |
| 209 |
Macqueen's bustard (maternal 2024)[IGV] |
Chlamydotis macqueenii |
GCA_036417535.1_bChlMac1.mat |
SAMN39296383 |
PRJNA1064422 |
2024-02-07 |
| 210 |
Macqueen's bustard (paternal 2024)[IGV] |
Chlamydotis macqueenii |
GCA_036418225.1_bChlMac1.pat |
SAMN39296383 |
PRJNA1064423 |
2024-02-07 |
| 211 |
maguari stork (bCicMag1 alternate hap 2021)[IGV] |
Ciconia maguari |
GCA_017639665.1_bCicMag1.alt |
SAMN18353822 |
PRJNA715732 |
2021-03-30 |
| 212 |
maguari stork (bCicMag1 primary hap 2021)[IGV] |
Ciconia maguari |
GCA_017639555.1_bCicMag1.pri |
SAMN18353822 |
PRJNA715733 |
2021-03-30 |
| 213 |
mallard (CAU_Wild1.0 2019)[IGV] |
Anas platyrhynchos |
GCA_008746955.1_CAU_Wild1.0 |
SAMN12287667 |
PRJNA554956 |
2019-10-07 |
| 214 |
mallard (hap1 2024)[IGV] |
Anas platyrhynchos |
GCA_964188345.1_bAnaPla2.hap1.1 |
SAMEA113398833 |
PRJEB76742 |
2024-06-21 |
| 215 |
mallard (hap2 2024)[IGV] |
Anas platyrhynchos |
GCA_964188335.1_bAnaPla2.hap2.1 |
SAMEA113398833 |
PRJEB76741 |
2024-06-19 |
| 216 |
mallard PBH1.5[IGV] |
Anas platyrhynchos |
GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5 |
SAMN10245527 |
PRJNA496533 |
2018-11-29 |
| 217 |
mallard ZJU1.0[IGV] |
Anas platyrhynchos |
GCF_015476345.1_ZJU1.0 |
SAMN15588841 |
PRJNA636121 |
2020-11-23 |
| 218 |
Mariana crow[IGV] |
Corvus kubaryi |
GCF_017639235.1_C.kubaryi_AGA036_p1.0 |
SAMN16883221 |
PRJNA680658 |
2021-03-30 |
| 219 |
Mauritius kestrel (alternate hap 2023)[IGV] |
Falco punctatus |
GCA_963210275.1_bFalPun1.1_alternate_haplotype |
SAMEA14356472 |
PRJEB65027 |
2023-08-19 |
| 220 |
Mauritius kestrel (primary hap 2023)[IGV] |
Falco punctatus |
GCA_963210335.1_bFalPun1.1 |
SAMEA14356472 |
PRJEB65028 |
2023-08-19 |
| 221 |
Mauritius parakeet (alternate hap 2023)[IGV] |
Psittacula echo |
GCA_963243765.1_bPsiEch3.1_alternate_haplotype |
SAMEA12361725 |
PRJEB65272 |
2023-08-20 |
| 222 |
Mauritius parakeet (primary hap 2023)[IGV] |
Psittacula echo |
GCA_963264785.1_bPsiEch3.1 |
SAMEA12361725 |
PRJEB65273 |
2023-08-20 |
| 223 |
medium ground-finch[IGV] |
Geospiza fortis |
GCF_000277835.1_GeoFor_1.0 |
SAMN00839579 |
PRJNA156703 |
2012-07-25 |
| 224 |
monk parakeet[IGV] |
Myiopsitta monachus |
GCA_017639245.1_MMon_1.0 |
SAMN16846069 |
PRJNA679636 |
2021-03-30 |
| 225 |
Montezuma quail (F1298 2024)[IGV] |
Cyrtonyx montezumae |
GCF_038088225.1_pur_monq_1.0 |
SAMN40333712 |
PRJNA1085761 |
2024-04-12 |
| 226 |
mute swan (bCygOlo1 v2 alternate hap 2021)[IGV] |
Cygnus olor |
GCA_009769485.2_bCygOlo1.alt.v2 |
SAMN12621369 |
PRJNA561961 |
2021-03-30 |
| 227 |
mute swan (bCygOlo1 v2 primary hap 2021)[IGV] |
Cygnus olor |
GCF_009769625.2_bCygOlo1.pri.v2 |
SAMN12621369 |
PRJNA561960 |
2021-03-31 |
| 228 |
Nelson's sparrow (bAmmNel1 alternate hap 2023)[IGV] |
Ammospiza nelsoni |
GCA_027579665.1_bAmmNel1.alt |
SAMN28421656 |
PRJNA839457 |
2023-01-06 |
| 229 |
Nelson's sparrow (bAmmNel1 primary hap 2023 refseq)[IGV] |
Ammospiza nelsoni |
GCF_027579445.1_bAmmNel1.pri |
SAMN28421656 |
PRJNA839456 |
2023-01-09 |
| 230 |
New Caledonian crow (2019)[IGV] |
Corvus moneduloides |
GCF_009650955.1_bCorMon1.pri |
SAMN12368441 |
PRJNA560983 |
2019-11-14 |
| 231 |
New Caledonian crow (alternate hap 2019)[IGV] |
Corvus moneduloides |
GCA_009651025.1_bCorMon1.alt |
SAMN12368441 |
PRJNA560982 |
2019-11-12 |
| 232 |
Nicobar pigeon (hap1 2024 genbank)[IGV] |
Caloenas nicobarica |
GCA_036013445.1_bCalNic1.hap1 |
SAMN39256628 |
PRJNA1061158 |
2024-01-26 |
| 233 |
Nicobar pigeon (hap1 2024 refseq)[IGV] |
Caloenas nicobarica |
GCF_036013445.1_bCalNic1.hap1 |
SAMN39256628 |
PRJNA1061158 |
2024-01-26 |
| 234 |
Nicobar pigeon (hap2 2024)[IGV] |
Caloenas nicobarica |
GCA_036010745.1_bCalNic1.hap2 |
SAMN39256628 |
PRJNA1061159 |
2024-01-24 |
| 235 |
night parrot (Australia 2023)[IGV] |
Pezoporus occidentalis |
GCF_034315485.1_CSIRO_AGI_Poc_V1 |
SAMN38375542 |
PRJNA1044171 |
2023-12-12 |
| 236 |
North Island brown kiwi (bAptMan1hap1 2024)[IGV] |
Apteryx mantelli |
GCF_036417845.1_bAptMan1.hap1 |
SAMN39257886 |
PRJNA1061176 |
2024-02-06 |
| 237 |
North Island brown kiwi (hap1 2024)[IGV] |
Apteryx mantelli |
GCA_036417845.1_bAptMan1.hap1 |
SAMN39257886 |
PRJNA1061176 |
2024-02-06 |
| 238 |
North Island brown kiwi (hap2 2024)[IGV] |
Apteryx mantelli |
GCA_036417975.1_bAptMan1.hap2 |
SAMN39257886 |
PRJNA1061175 |
2024-02-06 |
| 239 |
northern bobwhite[IGV] |
Colinus virginianus |
GCA_008692595.2_Cv_LA_2.0 |
SAMN09044008 |
PRJNA454855 |
2021-04-29 |
| 240 |
northern fulmar[IGV] |
Fulmarus glacialis |
GCF_000690835.1_ASM69083v1 |
SAMN02324803 |
PRJNA212894 |
2014-05-13 |
| 241 |
northern gannet (hap1 2023)[IGV] |
Morus bassanus |
GCA_031468805.1_bMorBas2.hap1 |
SAMN37096299 |
PRJNA1009680 |
2023-09-15 |
| 242 |
northern gannet (hap2 2023)[IGV] |
Morus bassanus |
GCA_031468815.1_bMorBas2.hap2 |
SAMN37096299 |
PRJNA1009681 |
2023-09-15 |
| 243 |
northern goshawk (bAccGen1 primary hap v1 2022 refseq)[IGV] |
Accipiter gentilis |
GCF_929443795.1_bAccGen1.1 |
SAMEA8235650 |
PRJEB50702 |
2022-02-09 |
| 244 |
northern goshawk (bAccGen1 primary hap v2 2022 genbank)[IGV] |
Accipiter gentilis |
GCA_929443795.2_bAccGen1.2 |
SAMEA8235650 |
PRJEB50702 |
2022-10-27 |
| 245 |
northern goshawk (bAccGen1 v1 alternate hap 2022)[IGV] |
Accipiter gentilis |
GCA_929447715.1_bAccGen1.1_alternate_haplotype |
SAMEA8235650 |
PRJEB50703 |
2022-02-13 |
| 246 |
northern pintail (primary hap 2024)[IGV] |
Anas acuta |
GCA_963932015.1_bAnaAcu1.1 |
SAMEA112468036 |
PRJEB72290 |
2024-02-07 |
| 247 |
northern pintail (primary hap 2024)[IGV] |
Anas acuta |
GCF_963932015.1_bAnaAcu1.1 |
SAMEA112468036 |
PRJEB72290 |
2024-02-07 |
| 248 |
Obi paradise-crow (lycPyr6 2020)[IGV] |
Lycocorax pyrrhopterus obiensis |
GCA_014706295.1_ASM1470629v1 |
SAMN15881065 |
PRJNA604967 |
2020-09-23 |
| 249 |
Okarito brown kiwi[IGV] |
Apteryx rowi |
GCF_003343035.1_aptRow1 |
SAMN08476454 |
PRJNA433110 |
2018-07-26 |
| 250 |
Oriental scops-owl (oso-nibr-517 2020)[IGV] |
Otus sunia |
GCA_010365825.1_OtuSun1.0 |
SAMN08398467 |
PRJNA431699 |
2020-02-04 |
| 251 |
peregrine falcon (bFalPer1 alternate hap 2022)[IGV] |
Falco peregrinus |
GCA_023634185.1_bFalPer1.alt |
SAMN28688290 |
PRJNA842833 |
2022-06-01 |
| 252 |
peregrine falcon (bFalPer1 primary hap 2022 refseq)[IGV] |
Falco peregrinus |
GCF_023634155.1_bFalPer1.pri |
SAMN28688290 |
PRJNA842834 |
2022-06-02 |
| 253 |
peregrine falcon (BGI 2013)[IGV] |
Falco peregrinus |
GCF_000337955.1_F_peregrinus_v1.0 |
SAMN02981425 |
PRJNA159791 |
2013-02-05 |
| 254 |
pin-tailed whydah (BioBank_ID:100142 2022)[IGV] |
Vidua macroura |
GCF_024509145.1_ASM2450914v1 |
SAMN27279399 |
PRJNA822827 |
2022-08-03 |
| 255 |
pink pigeon (alternate hap 2023)[IGV] |
Nesoenas mayeri |
GCA_963082445.1_bNesMay2.1_alternate_haplotype |
SAMEA12922160 |
PRJEB64782 |
2023-08-08 |
| 256 |
pink pigeon (primary hap 2023)[IGV] |
Nesoenas mayeri |
GCA_963082525.1_bNesMay2.1 |
SAMEA12922160 |
PRJEB64783 |
2023-08-09 |
| 257 |
pink-footed goose (primary hap 2024)[IGV] |
Anser brachyrhynchus |
GCA_964034855.1_bAnsBra1.1 |
SAMEA112468040 |
PRJEB75305 |
2024-04-27 |
| 258 |
plumbeous ibis (bTheCae1 alternate hap 2021)[IGV] |
Theristicus caerulescens |
GCA_020745805.1_bTheCae1.alt.cur |
SAMN22550094 |
PRJNA774321 |
2021-11-05 |
| 259 |
plumbeous ibis (bTheCae1 primary hap 2021)[IGV] |
Theristicus caerulescens |
GCA_020745775.1_bTheCae1.pri.cur |
SAMN22550094 |
PRJNA774297 |
2021-11-05 |
| 260 |
Puerto Rican parrot (LU 182127 2020)[IGV] |
Amazona vittata |
GCA_000332375.2_ASM33237v2 |
SAMN02981494 |
PRJNA171587 |
2020-08-28 |
| 261 |
razorbill (2006_11_07_Graehlm_vinge_78 2019)[IGV] |
Alca torda |
GCA_008658365.1_bAlcTor1_primary |
SAMN12292087 |
PRJNA554520 |
2019-10-10 |
| 262 |
razorbill (alternate hap 2006_11_07_Graehlm_vinge_78 2019)[IGV] |
Alca torda |
GCA_008658355.1_bAlcTor1_alternate |
SAMN12292087 |
PRJNA554521 |
2019-09-23 |
| 263 |
red-backed fairy wren (Western Australia 2023)[IGV] |
Malurus melanocephalus |
GCF_030028575.1_MMel_1.1 |
SAMN33278196 |
PRJNA934711 |
2023-05-17 |
| 264 |
red-crested pochard (primary hap 2024)[IGV] |
Netta rufina |
GCA_964035555.1_bNetRuf1.1 |
SAMEA112468124 |
PRJEB75341 |
2024-04-29 |
| 265 |
red-crested turaco (2019)[IGV] |
Tauraco erythrolophus |
GCA_009769465.1_bTauEry1.pri |
SAMN12621036 |
PRJNA561947 |
2019-12-19 |
| 266 |
red-crested turaco (alternate hap 2019)[IGV] |
Tauraco erythrolophus |
GCA_009764505.1_bTauEry1.alt |
SAMN12621036 |
PRJNA561948 |
2019-12-18 |
| 267 |
red-fronted tinkerbird (bPogPus1 alternate hap 2020)[IGV] |
Pogoniulus pusillus |
GCA_015220175.1_bPogPus1.alt |
SAMN15098508 |
PRJNA637954 |
2020-11-02 |
| 268 |
red-fronted tinkerbird (bPogPus1 primary hap 2020)[IGV] |
Pogoniulus pusillus |
GCA_015220805.1_bPogPus1.pri |
SAMN15098508 |
PRJNA637953 |
2020-11-03 |
| 269 |
Red-fronted tinkerbird (bPogPus1 primary hap 2020)[IGV] |
Pogoniulus pusillus |
GCF_015220805.1_bPogPus1.pri |
SAMN15098508 |
PRJNA637953 |
2020-11-03 |
| 270 |
red-legged partridge[IGV] |
Alectoris rufa |
GCA_019345075.1_ASM1934507v1 |
SAMN16083939 |
PRJNA662415 |
2021-07-26 |
| 271 |
red-legged seriema (2019)[IGV] |
Cariama cristata |
GCA_009819825.1_bCarCri1.pri |
SAMN12614807 |
PRJNA561892 |
2019-12-31 |
| 272 |
red-legged seriema (alternate hap 2019)[IGV] |
Cariama cristata |
GCA_009819485.1_bCarCri1.alt |
SAMN12614807 |
PRJNA561893 |
2019-12-23 |
| 273 |
red-throated loon (BGI_N328 2014)[IGV] |
Gavia stellata |
GCF_000690875.1_ASM69087v1 |
SAMN02324832 |
PRJNA212895 |
2014-05-13 |
| 274 |
red-throated loon (hap1 2023)[IGV] |
Gavia stellata |
GCA_030936125.1_bGavSte3.hap1 |
SAMN37096312 |
PRJNA1008846 |
2023-08-30 |
| 275 |
red-throated loon (hap2 2023 refseq)[IGV] |
Gavia stellata |
GCF_030936135.1_bGavSte3.hap2 |
SAMN37096312 |
PRJNA1008847 |
2023-08-30 |
| 276 |
red-winged blackbird (BioBank_ID:100140 2023)[IGV] |
Agelaius phoeniceus |
GCF_020745825.1_Agelaius_phoeniceus_1.1 |
SAMN19590559 |
PRJNA735624 |
2023-03-15 |
| 277 |
rhinoceros hornbill[IGV] |
Buceros rhinoceros silvestris |
GCF_000710305.1_ASM71030v1 |
SAMN02318191 |
PRJNA212887 |
2014-06-25 |
| 278 |
rifleman (bAcaChl1 alternate hap 2021)[IGV] |
Acanthisitta chloris |
GCA_016880875.1_bAcaChl1.alt |
SAMN16442762 |
PRJNA561955 |
2021-02-10 |
| 279 |
rifleman (bAcaChl1 primary hap 2021)[IGV] |
Acanthisitta chloris |
GCA_016904835.1_bAcaChl1.pri |
SAMN16442762 |
PRJNA561954 |
2021-02-17 |
| 280 |
ring-necked pheasant[IGV] |
Phasianus colchicus |
GCF_004143745.1_ASM414374v1 |
SAMN08888240 |
PRJNA449162 |
2019-02-06 |
| 281 |
rock pigeon (Danish tumbler 2013 BGI)[IGV] |
Columba livia |
GCF_000337935.1_Cliv_1.0 |
SAMN02981415 |
PRJNA167554 |
2013-02-11 |
| 282 |
rock pigeon (racing homer bColLiv1 2024)[IGV] |
Columba livia |
GCA_036010775.2_bColLiv1.mat.v2 |
SAMN38891892 |
PRJNA1054132 |
2024-04-08 |
| 283 |
rock pigeon (racing homer bColLiv1 2024)[IGV] |
Columba livia |
GCA_036013475.2_bColLiv1.pat.W.v2 |
SAMN38891892 |
PRJNA1054131 |
2024-04-08 |
| 284 |
rock pigeon (racing homer bColLiv1 2024)[IGV] |
Columba livia |
GCF_036013475.1_bColLiv1.pat.W.v2 |
SAMN38891892 |
PRJNA1054131 |
2024-04-08 |
| 285 |
rock pigeon (racing homer maternal 2024)[IGV] |
Columba livia |
GCA_036010775.1_bColLiv1.mat |
SAMN38891892 |
PRJNA1054132 |
2024-02-06 |
| 286 |
rock pigeon (racing homer paternal W 2024)[IGV] |
Columba livia |
GCA_036013475.1_bColLiv1.pat.W |
SAMN38891892 |
PRJNA1054131 |
2024-01-31 |
| 287 |
rock ptarmigan (bLagMut1 alternate hap 2022)[IGV] |
Lagopus muta |
GCA_023344045.1_bLagMut1_alternate |
SAMN25144835 |
PRJNA836585 |
2022-05-12 |
| 288 |
rock ptarmigan (primary hap 2022 refseq)[IGV] |
Lagopus muta |
GCF_023343835.1_bLagMut1_primary |
SAMN25144835 |
PRJNA836583 |
2022-05-12 |
| 289 |
ruddy duck[IGV] |
Oxyura jamaicensis |
GCF_011077185.1_BPBGC_Ojam_1.0 |
SAMN13257492 |
PRJNA588796 |
2020-03-10 |
| 290 |
ruff[IGV] |
Calidris pugnax |
GCF_001431845.1_ASM143184v1 |
SAMN03491621 |
PRJNA281024 |
2015-11-04 |
| 291 |
rufous-necked snowfinch[IGV] |
Pyrgilauda ruficollis |
GCF_017590135.1_ASM1759013v1 |
SAMN18252884 |
PRJNA417520 |
2021-03-26 |
| 292 |
rusty-margined flycatcher (MyiCay16 2022)[IGV] |
Myiozetetes cayanensis |
GCF_022539395.1_myiCay2020 |
SAMN25990114 |
PRJNA807488 |
2022-03-10 |
| 293 |
saffron-crested tyrant-manakin[IGV] |
Neopelma chrysocephalum |
GCF_003984885.1_ASM398488v2 |
SAMN08784363 |
PRJNA445439 |
2018-12-28 |
| 294 |
sage sparrow (canescens MVZ Bird 192114 alternate hap 2022)[IGV] |
Artemisiospiza belli |
GCA_021966175.1_bArtBel1.0.a |
SAMN24224802 |
PRJNA791508 |
2022-02-04 |
| 295 |
sage sparrow (canescens MVZ Bird 192114 primary hap 2022)[IGV] |
Artemisiospiza belli |
GCA_021963965.1_bArtBel1.0.p |
SAMN24224802 |
PRJNA791509 |
2022-02-04 |
| 296 |
Saker falcon (bFalChe1 alternate hap 2022)[IGV] |
Falco cherrug |
GCA_023634115.1_bFalChe1.alt |
SAMN28688204 |
PRJNA842830 |
2022-06-01 |
| 297 |
Saker falcon (bFalChe1 primary hap 2022 refseq)[IGV] |
Falco cherrug |
GCF_023634085.1_bFalChe1.pri |
SAMN28688204 |
PRJNA842831 |
2022-06-02 |
| 298 |
Saker falcon (BGI 2013)[IGV] |
Falco cherrug |
GCF_000337975.1_F_cherrug_v1.0 |
SAMN02981426 |
PRJNA168071 |
2013-02-05 |
| 299 |
saltmarsh sparrow (bAmmCau1 alternate hap 2023)[IGV] |
Ammospiza caudacuta |
GCA_027887135.1_bAmmCau1.alt |
SAMN28421630 |
PRJNA839451 |
2023-01-17 |
| 300 |
saltmarsh sparrow (bAmmCau1 primary hap 2023 refseq)[IGV] |
Ammospiza caudacuta |
GCF_027887145.1_bAmmCau1.pri |
SAMN28421630 |
PRJNA839452 |
2023-01-18 |
| 301 |
Savannah sparrow (FMNH 499929 alternate hap 2022)[IGV] |
Passerculus sandwichensis alaudinus |
GCA_022578375.1_bPasSan1.0.a |
SAMN24839580 |
PRJNA796787 |
2022-03-15 |
| 302 |
Savannah sparrow (FMNH 499929 primary hap 2022)[IGV] |
Passerculus sandwichensis alaudinus |
GCA_022577445.1_bPasSan1.0.p |
SAMN24839580 |
PRJNA796788 |
2022-03-15 |
| 303 |
Savannah sparrow (primary hap 2023)[IGV] |
Passerculus sandwichensis |
GCA_031885435.1_bPasSan2.pri |
SAMN35784765 |
PRJNA1006784 |
2023-09-25 |
| 304 |
seaside sparrow (bAmmMar1 primary hap 2024)[IGV] |
Ammospiza maritima maritima |
GCA_036010785.1_bAmmMar1.pri |
SAMN39181024 |
PRJNA1060856 |
2024-01-24 |
| 305 |
small tree finch (2019)[IGV] |
Camarhynchus parvulus |
GCF_901933205.1_STF_HiC |
SAMEA5603054 |
PRJEB32528 |
2019-09-06 |
| 306 |
small tree finch (2020)[IGV] |
Camarhynchus parvulus |
GCA_902806625.1_Camarhynchus_parvulus_V1.1 |
SAMEA6542012 |
PRJEB36748 |
2020-03-21 |
| 307 |
song sparrow (bMelMel2 primary hap 2024)[IGV] |
Melospiza melodia melodia |
GCF_035770615.1_bMelMel2.pri |
SAMN35847297 |
PRJNA1006794 |
2024-01-24 |
| 308 |
song sparrow (gouldii PMB2087b alternate hap 2022)[IGV] |
Melospiza melodia |
GCA_022749775.1_bMelMel1.0.a |
SAMN24817870 |
PRJNA796323 |
2022-03-29 |
| 309 |
song sparrow (gouldii PMB2087b primary hap 2022)[IGV] |
Melospiza melodia |
GCA_022749695.1_bMelMel1.0.p |
SAMN24817870 |
PRJNA796324 |
2022-03-29 |
| 310 |
song sparrow (primary hap 2024)[IGV] |
Melospiza melodia melodia |
GCA_035770615.1_bMelMel2.pri |
SAMN35847297 |
PRJNA1006794 |
2024-01-24 |
| 311 |
South Island takahe (alternate 2021)[IGV] |
Porphyrio hochstetteri |
GCA_020801775.1_bPorHoc1.pat.decon |
SAMN22550412 |
PRJNA774332 |
2021-11-08 |
| 312 |
South Island takahe (primary 2021)[IGV] |
Porphyrio hochstetteri |
GCA_020800305.1_bPorHoc1.mat.Z.cur |
SAMN22550412 |
PRJNA774331 |
2021-11-08 |
| 313 |
speckled mousebird (bColStr4 hap1 2023)[IGV] |
Colius striatus |
GCF_028858725.1_bColStr4.1.hap1 |
SAMN33339572 |
PRJNA936149 |
2023-02-24 |
| 314 |
speckled mousebird (bColStr4 hap2 2023)[IGV] |
Colius striatus |
GCA_028858625.2_bColStr4.1.hap2 |
SAMN33339572 |
PRJNA936150 |
2023-02-24 |
| 315 |
speckled mousebird (BGI_N325 2014)[IGV] |
Colius striatus |
GCF_000690715.1_ASM69071v1 |
SAMN02324230 |
PRJNA212892 |
2014-05-13 |
| 316 |
speckled mousebird (hap1 2023)[IGV] |
Colius striatus |
GCA_028858725.1_bColStr4.hap1 |
SAMN33339572 |
PRJNA936149 |
2023-02-24 |
| 317 |
speckled mousebird (hap2 2023)[IGV] |
Colius striatus |
GCA_028858625.1_bColStr4.hap2 |
SAMN33339572 |
PRJNA936150 |
2023-02-24 |
| 318 |
steelblue widowfinch (merged hap OUT-0048 2022)[IGV] |
Vidua chalybeata |
GCA_026979565.1_bVidCha1_merged_haplotype |
SAMN12254000 |
PRJNA889055 |
2022-12-21 |
| 319 |
steelblue widowfinch (purged dups hap OUT-0048 2022)[IGV] |
Vidua chalybeata |
GCA_026979555.1_bVidCha1_purged_dups_haplotype |
SAMN12254000 |
PRJNA889056 |
2022-12-16 |
| 320 |
Steller's jay (frontalis alternate hap 2022)[IGV] |
Cyanocitta stelleri |
GCA_026168045.1_bCyaSte1.0.a |
SAMN30523672 |
PRJNA875160 |
2022-11-14 |
| 321 |
Steller's jay (frontalis primary hap 2022)[IGV] |
Cyanocitta stelleri |
GCA_026167965.1_bCyaSte1.0.p |
SAMN30523672 |
PRJNA875161 |
2022-11-14 |
| 322 |
sun parakeet (2019)[IGV] |
Aratinga solstitialis |
GCA_902168055.1_ARATINGA-SOLSTITIALIS-ASSEMBLY-PRJEB33153 |
SAMEA5743801 |
PRJEB33153 |
2019-11-14 |
| 323 |
sunbittern[IGV] |
Eurypyga helias |
GCF_000690775.1_ASM69077v1 |
SAMN02324546 |
PRJNA212893 |
2014-05-13 |
| 324 |
Suruca trogon (bRtoSur1 primary hap 2021)[IGV] |
Trogon surrucura |
GCA_020746105.1_bTroSur1.pri.cur |
SAMN22550082 |
PRJNA774295 |
2021-11-05 |
| 325 |
Suruca trogon (bTroSur1 alternate hap 2021)[IGV] |
Trogon surrucura |
GCA_020746095.1_bTroSur1.alt.cur |
SAMN22550082 |
PRJNA774296 |
2021-11-05 |
| 326 |
Swainson's thrush (bCatUst1 v2 alternate hap 2020)[IGV] |
Catharus ustulatus |
GCA_009819505.2_bCatUst1.alt.v2 |
SAMN12618602 |
PRJNA561934 |
2020-11-05 |
| 327 |
Swainson's thrush (bCatUst1 v2 primary hap 2020)[IGV] |
Catharus ustulatus |
GCF_009819885.2_bCatUst1.pri.v2 |
SAMN12618602 |
PRJNA561933 |
2020-12-22 |
| 328 |
swamp sparrow (bMelGeo1 alternate hap 2023)[IGV] |
Melospiza georgiana |
GCA_028019105.1_bMelGeo1.alt |
SAMN22787412 |
PRJNA915610 |
2023-01-26 |
| 329 |
swamp sparrow (bMelGeo1 primary hap 2023 refseq)[IGV] |
Melospiza georgiana |
GCF_028018845.1_bMelGeo1.pri |
SAMN22787412 |
PRJNA915609 |
2023-01-31 |
| 330 |
Swan (goose HZ-2024a 2024)[IGV] |
Anser cygnoides |
GCF_040182565.1_Taihu_goose_T2T_genome |
SAMN41386743 |
PRJNA1111257 |
2024-06-14 |
| 331 |
swan goose (Sichuan white goose 2017)[IGV] |
Anser cygnoides |
GCF_002166845.1_GooseV1.0 |
SAMN02898389 |
PRJNA253976 |
2017-06-02 |
| 332 |
swan goose (Tianfu 2020)[IGV] |
Anser cygnoides |
GCA_013030995.1_ASM1303099v1 |
SAMN13281505 |
PRJNA589208 |
2020-05-11 |
| 333 |
swan goose (Zhedong 2015)[IGV] |
Anser cygnoides domesticus |
GCF_000971095.1_AnsCyg_PRJNA183603_v1.0 |
SAMN01830643 |
PRJNA183603 |
2015-04-08 |
| 334 |
Swift parrot (hap1 2024)[IGV] |
Lathamus discolor |
GCF_037157495.1_bLatDis1.hap1 |
SAMN40289871 |
PRJNA1085017 |
2024-03-15 |
| 335 |
Swift parrot (hap2 2024)[IGV] |
Lathamus discolor |
GCA_037157625.1_bLatDis1.hap2 |
SAMN40289871 |
PRJNA1085018 |
2024-03-15 |
| 336 |
tawny frogmouth (bPodStr1 alternate hap 2023)[IGV] |
Podargus strigoides |
GCA_028020675.1_bPodStr1.alt |
SAMN31801959 |
PRJNA912328 |
2023-01-26 |
| 337 |
tawny frogmouth (bPodStr1 primary hap 2023)[IGV] |
Podargus strigoides |
GCA_028020825.1_bPodStr1.pri |
SAMN31801959 |
PRJNA912327 |
2023-01-31 |
| 338 |
tawny owl (hap1 2023)[IGV] |
Strix aluco |
GCA_031877795.1_bStrAlu1.hap1 |
SAMN37055808 |
PRJNA1007267 |
2023-09-25 |
| 339 |
tawny owl (hap2 2023)[IGV] |
Strix aluco |
GCA_031877785.1_bStrAlu1.hap2 |
SAMN37055808 |
PRJNA1007266 |
2023-09-25 |
| 340 |
tawny-flanked prinia (Zambia CZ2003 2024)[IGV] |
Prinia subflava |
GCF_021018805.1_Cam_Psub_1.2 |
SAMN20994451 |
PRJNA758068 |
2024-01-26 |
| 341 |
Tibetan ground-tit[IGV] |
Pseudopodoces humilis |
GCF_000331425.1_PseHum1.0 |
SAMN02981490 |
PRJNA175930 |
2013-01-11 |
| 342 |
tourmaline sunangel (hap1 2024)[IGV] |
Heliangelus exortis |
GCA_036169615.1_bHelExo1.hap1 |
SAMN37253778 |
PRJNA1012326 |
2024-01-26 |
| 343 |
tourmaline sunangel (hap2 2024)[IGV] |
Heliangelus exortis |
GCA_036172335.1_bHelExo1.hap2 |
SAMN37253778 |
PRJNA1012325 |
2024-01-26 |
| 344 |
tricolored blackbird (1412-34295 alternate hap 2022)[IGV] |
Agelaius tricolor |
GCA_023055385.1_bAgeTri1.0.a |
SAMN25872474 |
PRJNA810501 |
2022-04-19 |
| 345 |
tricolored blackbird (1412-34295 primary hap 2022)[IGV] |
Agelaius tricolor |
GCA_023055355.1_bAgeTri1.0.p |
SAMN25872474 |
PRJNA810502 |
2022-04-19 |
| 346 |
tufted duck (2019)[IGV] |
Aythya fuligula |
GCF_009819795.1_bAytFul2.pri |
SAMN12621346 |
PRJNA561952 |
2019-12-31 |
| 347 |
tufted duck (alternate hap 2019)[IGV] |
Aythya fuligula |
GCA_009819845.1_bAytFul2.alt |
SAMN12621346 |
PRJNA561953 |
2019-12-23 |
| 348 |
turkey (Aviagen NT-WF06-2002-E0010 2014)[IGV] |
Meleagris gallopavo |
GCF_000146605.3_Turkey_5.1 |
SAMN02981253 |
PRJNA42129 |
2014-11-24 |
| 349 |
turkey (WU_HG_1 2021)[IGV] |
Meleagris gallopavo |
GCA_905368555.1_MGAL_WU_HG_1.0 |
SAMEA7852930 |
PRJEB42643 |
2021-03-26 |
| 350 |
village indigobird (OUT-0048 2022)[IGV] |
Vidua chalybeata |
GCF_026979565.1_bVidCha1_merged_haplotype |
SAMN12254000 |
PRJNA889055 |
2022-12-21 |
| 351 |
Virginia rail (171378401 alternate hap 2022)[IGV] |
Rallus limicola |
GCA_022605895.1_bRalLim1.0.a |
SAMN24505263 |
PRJNA794194 |
2022-03-17 |
| 352 |
Virginia rail (171378401 primary hap 2022)[IGV] |
Rallus limicola |
GCA_022605955.1_bRalLim1.0.p |
SAMN24505263 |
PRJNA794195 |
2022-03-17 |
| 353 |
western capercaillie (alternate hap 2023)[IGV] |
Tetrao urogallus |
GCA_951394355.1_bTetUro1.1_alternate_haplotype |
SAMEA9654429 |
PRJEB62069 |
2023-05-13 |
| 354 |
western capercaillie (primary hap 2023)[IGV] |
Tetrao urogallus |
GCA_951394365.1_bTetUro1.1 |
SAMEA9654429 |
PRJEB62070 |
2023-06-15 |
| 355 |
western scrub-jay (CA MVZ Bird 193978 2023)[IGV] |
Aphelocoma californica |
GCA_028536645.1_bAphCal1.0.hap2 |
SAMN31837216 |
PRJNA904313 |
2023-02-07 |
| 356 |
western scrub-jay (CA MVZ Bird 193978 2023)[IGV] |
Aphelocoma californica |
GCA_028536675.1_bAphCal1.0.hap1 |
SAMN31837216 |
PRJNA904314 |
2023-02-07 |
| 357 |
whiskered treeswift (bHemCom1 alternate hap 2021)[IGV] |
Hemiprocne comata |
GCA_020745695.1_bHemCom1.alt.cur |
SAMN22588383 |
PRJNA774830 |
2021-11-05 |
| 358 |
whiskered treeswift (bHemCor1 primary hap 2021)[IGV] |
Hemiprocne comata |
GCA_020745705.1_bHemCom1.pri.cur |
SAMN22588383 |
PRJNA774831 |
2021-11-05 |
| 359 |
white wagtail[IGV] |
Motacilla alba alba |
GCF_015832195.1_Motacilla_alba_V1.0_pri |
SAMN16093224 |
PRJNA662706 |
2020-12-08 |
| 360 |
white-collared manakin (Guabito, Panama 608988 2022)[IGV] |
Manacus candei |
GCF_025592945.1_ASM2559294v1 |
SAMN30181648 |
PRJNA867001 |
2022-10-05 |
| 361 |
white-crowned manakin (hap1 2024)[IGV] |
Pseudopipra pipra |
GCA_036250125.1_bDixPip1.hap1 |
SAMN32739894 |
PRJNA1057371 |
2024-01-31 |
| 362 |
white-crowned manakin (hap2 2024)[IGV] |
Pseudopipra pipra |
GCA_036250135.1_bDixPip1.hap2 |
SAMN32739894 |
PRJNA1057370 |
2024-01-31 |
| 363 |
white-ruffed manakin[IGV] |
Corapipo altera |
GCF_003945725.1_ASM394572v1 |
SAMN10424454 |
PRJNA505529 |
2018-12-14 |
| 364 |
white-rumped snowfinch[IGV] |
Onychostruthus taczanowskii |
GCF_017590055.1_ASM1759005v1 |
SAMN18252883 |
PRJNA417520 |
2021-03-26 |
| 365 |
white-tailed eagle (BGI_N329 2014)[IGV] |
Haliaeetus albicilla |
GCF_000691405.1_ASM69140v1 |
SAMN02333670 |
PRJNA212896 |
2014-05-15 |
| 366 |
white-tailed eagle (bHalAlb1.1 2022)[IGV] |
Haliaeetus albicilla |
GCA_947461875.1_bHalAlb1.1 |
SAMEA12857288 |
PRJEB57865 |
2022-12-06 |
| 367 |
white-tailed eagle (bHalAlb1.1 alternate hap 2022)[IGV] |
Haliaeetus albicilla |
GCA_947461935.1_bHalAlb1.1_alternate_haplotype |
SAMEA12857288 |
PRJEB57864 |
2022-12-02 |
| 368 |
white-tailed ptarmigan[IGV] |
Lagopus leucura |
GCF_019238085.1_USGS_WTPT01 |
SAMN12859112 |
PRJNA574481 |
2021-07-15 |
| 369 |
white-tailed tropicbird[IGV] |
Phaethon lepturus |
GCF_000687285.1_ASM68728v1 |
SAMN02339888 |
PRJNA212902 |
2014-05-08 |
| 370 |
white-throated dipper (primary hap 2023)[IGV] |
Cinclus cinclus |
GCA_963662255.1_bCinCin1.1 |
SAMEA9679959 |
PRJEB68422 |
2023-12-11 |
| 371 |
white-throated dipper (primary hap 2023)[IGV] |
Cinclus cinclus |
GCF_963662255.1_bCinCin1.1 |
SAMEA9679959 |
PRJEB68422 |
2023-12-11 |
| 372 |
white-throated sparrow[IGV] |
Zonotrichia albicollis |
GCF_000385455.1_Zonotrichia_albicollis-1.0.1 |
SAMN02981528 |
PRJNA197293 |
2013-04-30 |
| 373 |
white-throated tinamou[IGV] |
Tinamus guttatus |
GCF_000705375.1_ASM70537v2 |
SAMN02316659 |
PRJNA212876 |
2014-08-05 |
| 374 |
whooping crane (maternal hap 2023 refseq)[IGV] |
Grus americana |
GCF_028858705.1_bGruAme1.mat |
SAMN32775697 |
PRJNA924953 |
2023-02-24 |
| 375 |
whooping crane (paternal hap 2023)[IGV] |
Grus americana |
GCA_028858595.1_bGruAme1.pat |
SAMN32775697 |
PRJNA924954 |
2023-02-24 |
| 376 |
willow flycatcher[IGV] |
Empidonax traillii |
GCF_003031625.1_ASM303162v1 |
SAMN08663748 |
PRJNA437496 |
2018-04-03 |
| 377 |
wire-tailed manakin (2020)[IGV] |
Pipra filicauda |
GCF_003945595.2_ASM394559v2 |
SAMN08774045 |
PRJNA445296 |
2020-12-01 |
| 378 |
wrentit (frontalis MVZ Bird 193981 alternate hap 2023)[IGV] |
Chamaea fasciata |
GCA_029207785.1_bChaFas1.0.hap2 |
SAMN33386005 |
PRJNA936926 |
2023-03-14 |
| 379 |
wrentit (frontalis MVZ Bird 193981 primary hap 2023 refseq)[IGV] |
Chamaea fasciata |
GCF_029207755.1_bChaFas1.0.hap1 |
SAMN33386005 |
PRJNA936927 |
2023-03-14 |
| 380 |
yellow warbler (LACM:Birds122168 alternate hap 2022)[IGV] |
Setophaga petechia |
GCA_024372515.1_bSetPet1.0.a |
SAMN29044059 |
PRJNA851102 |
2022-07-21 |
| 381 |
yellow warbler (LACM:Birds122168 primary hap 2022)[IGV] |
Setophaga petechia |
GCA_024362935.1_bSetPet1.0.p |
SAMN29044059 |
PRJNA851103 |
2022-07-22 |
| 382 |
yellow-crowned parrot (bAmaOch1hap1 2024)[IGV] |
Amazona ochrocephala |
GCA_039720435.1_bAmaOch1.hap1 |
SAMN41018448 |
PRJNA1102367 |
2024-05-24 |
| 383 |
yellow-crowned parrot (bAmaOch1hap2 2024)[IGV] |
Amazona ochrocephala |
GCA_039720425.1_bAmaOch1.hap2 |
SAMN41018448 |
PRJNA1102368 |
2024-05-24 |
| 384 |
yellow-legged gull (bLarMic1.1_alternate_haplotype 2024)[IGV] |
Larus michahellis |
GCA_964199725.1_bLarMic1.1_alternate_haplotype |
SAMEA114211328 |
PRJEB77561 |
2024-07-13 |
| 385 |
yellow-legged gull (primary hap 2024)[IGV] |
Larus michahellis |
GCA_964199755.1_bLarMic1.1 |
SAMEA114211328 |
PRJEB77562 |
2024-07-14 |
| 386 |
yellow-throated sandgrouse (2019)[IGV] |
Pterocles gutturalis |
GCA_009769525.1_bPteGut1.pri |
SAMN12623217 |
PRJNA561958 |
2019-12-23 |
| 387 |
yellow-throated sandgrouse (alternate hap 2019)[IGV] |
Pterocles gutturalis |
GCA_009769505.1_bPteGut1.alt |
SAMN12623217 |
PRJNA561959 |
2019-12-19 |
| 388 |
zebra finch (alternate hap Black17 2018)[IGV] |
Taeniopygia guttata |
GCA_003957525.1_bTaeGut1_v1.h |
SAMN02981239 |
PRJNA489099 |
2018-12-20 |
| 389 |
zebra finch (alternate hap Blue55 v1 2020)[IGV] |
Taeniopygia guttata |
GCA_009859025.1_bTaeGut2.p.v1.alt |
SAMN09946140 |
PRJNA489187 |
2020-01-13 |
| 390 |
zebra finch (Black17 v1.4 alternate hap 2021)[IGV] |
Taeniopygia guttata |
GCA_003957525.2_bTaeGut1.4.alt |
SAMN02981239 |
PRJNA489099 |
2021-04-28 |
| 391 |
zebra finch (Blue55 2020)[IGV] |
Taeniopygia guttata |
GCA_009859065.2_bTaeGut2.pri.v2 |
SAMN09946140 |
PRJNA489186 |
2020-04-01 |
| 392 |
zebra finch (Blue55 maternal v3 2020)[IGV] |
Taeniopygia guttata |
GCA_008822115.3_bTaeGut2.mat.v3 |
SAMN09946140 |
PRJNA489100 |
2020-02-21 |
| 393 |
zebra finch (Blue55 paternal 2019)[IGV] |
Taeniopygia guttata |
GCA_008822125.1_bTaeGut2pat |
SAMN09946140 |
PRJNA489101 |
2019-10-03 |
| 394 |
zebra finch (Blue55 paternal W 2020)[IGV] |
Taeniopygia guttata |
GCF_008822105.2_bTaeGut2.pat.W.v2 |
SAMN09946140 |
PRJNA555095 |
2020-02-12 |
| 395 |
zebra finch (Blue55 v1.4 primary hap 2021)[IGV] |
Taeniopygia guttata |
GCF_003957565.2_bTaeGut1.4.pri |
SAMN02981239 |
PRJNA489098 |
2021-05-04 |