Mammals Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of mammals only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statistics, track statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 aardvark (hap1 2026)[IGV] Orycteropus afer GCA_054668785.1_mOryAfe1.hap1 SAMN53244260 PRJNA1364061 2026-01-23
2 aardvark (hap2 2026)[IGV] Orycteropus afer GCA_054668755.1_mOryAfe1.hap2 SAMN53244260 PRJNA1364062 2026-01-23
3 aardvark (SDZICR_OR568_19922 2012 Broad)[IGV] Orycteropus afer afer GCF_000298275.1_OryAfe1.0 SAMN00744890 PRJNA74587 2012-09-20
4 African grass rat (maternal 2020)[IGV] Arvicanthis niloticus GCA_011750645.1_mArvNil1.mat SAMN12611849 PRJNA561936 2020-03-25
5 African grass rat (paternal 2020)[IGV] Arvicanthis niloticus GCA_011762545.1_mArvNil1.pat SAMN12611849 PRJNA561935 2020-03-25
6 African grass rat (v1 paternal X 2020 refseq)[IGV] Arvicanthis niloticus GCF_011762505.1_mArvNil1.pat.X SAMN12611849 PRJNA608735 2020-03-27
7 African grass rat (v2 paternal X 2024 genbank)[IGV] Arvicanthis niloticus GCA_011762505.2_mArvNil1.pat.X SAMN12611849 PRJNA608735 2024-10-22
8 African grass rat (v2 paternal X 2025 refseq)[IGV] Arvicanthis niloticus GCF_011762505.2_mArvNil1.pat.X SAMN12611849 PRJNA608735 2025-01-29
9 African grass rat (v3 paternal hap 2024)[IGV] Arvicanthis niloticus GCA_011762505.3_mArvNil1.pat.X SAMN12611849 PRJNA608735 2025-01-29
10 African hunting dog[IGV] Lycaon pictus GCA_001887905.1_LycPicSAfr1.0 SAMN04312208 PRJNA304992 2016-12-01
11 African hunting dog (LycPic1hap1 2024)[IGV] Lycaon pictus GCA_040955645.1_LycPic1.final.hap1 SAMN36939365 PRJNA1099603 2024-08-01
12 African hunting dog (LycPic1hap2 2024)[IGV] Lycaon pictus GCA_040955705.1_LycPic1.final.hap2 SAMN36939365 PRJNA1099604 2024-08-01
13 African savanna elephant (2009 refseq)[IGV] Loxodonta africana GCF_000001905.1_Loxafr3.0 SAMN02953622 PRJNA12569 2009-07-15
14 African savanna elephant (hap1 mLoxAfr1 2023)[IGV] Loxodonta africana GCA_030020305.1_mLoxAfr1.hap1 SAMN32756554 PRJNA924321 2023-05-15
15 African savanna elephant (hap2 2023 genbank)[IGV] Loxodonta africana GCA_030014295.1_mLoxAfr1.hap2 SAMN32756554 PRJNA924322 2023-05-16
16 African savanna elephant (hap2 2023 refseq)[IGV] Loxodonta africana GCF_030014295.1_mLoxAfr1.hap2 SAMN32756554 PRJNA924322 2023-05-16
17 African soft-furred rat (Lowveld savanna grassland N552 2022)[IGV] Mastomys natalensis GCA_021653895.1_UFL_Mnatal_1.0 SAMN24386922 PRJNA792141 2022-01-27
18 African soft-furred rat (MVZ Mamm 221054 2021)[IGV] Mastomys natalensis GCA_019843795.1_ASM1984379v1 SAMN16477138 PRJNA669840 2021-09-01
19 agile gracile mouse opossum[IGV] Gracilinanus agilis GCF_016433145.1_AgileGrace SAMN16807781 PRJNA565840 2021-01-06
20 Allen's wood mouse (MVZ Mamm 196246 2021)[IGV] Hylomyscus alleni GCA_019843855.1_ASM1984385v1 SAMN16477136 PRJNA669840 2021-09-01
21 alpaca (2025)[IGV] Vicugna pacos GCF_048564905.1_VicPac4 SAMN46075394 PRJNA1206227 2025-03-12
22 alpaca (v3.2 Carlotta AHFN-0088 2019 Deakin U)[IGV] Vicugna pacos GCF_000164845.4_VicPac3.2 SAMN01096418 PRJNA544883 2019-07-15
23 Alpine marmot (2019)[IGV] Marmota marmota marmota GCF_001458135.2_marMar SAMEA3214822 PRJEB8272 2019-12-18
24 Alston's brown mouse (SKS-2025a 2025)[IGV] Scotinomys teguina GCA_049901635.1_ASM4990163v1 SAMN46884427 PRJNA878522 2025-04-24
25 Alvarez's mastiff bat (A012 2023)[IGV] Molossus alvarezi GCA_031001765.1_BBF_mMolAlv_v1 SAMN31836526 PRJNA944206 2023-08-30
26 Alvarez's mastiff bat (hap1 2024)[IGV] Molossus alvarezi GCA_037157525.1_mMolAlv2.hap1 SAMN40002245 PRJNA1080661 2024-03-15
27 Alvarez's mastiff bat (hap2 2024)[IGV] Molossus alvarezi GCA_037176705.1_mMolAlv2.hap2 SAMN40002245 PRJNA1080660 2024-03-15
28 Amazon manatee (hap1 2025)[IGV] Trichechus inunguis GCA_046562985.1_mTriInu1_haplotype_1 SAMN44524440 PRJNA1180599 2025-01-08
29 Amazon manatee (hap2 2025)[IGV] Trichechus inunguis GCA_046562895.1_mTriInu1_haplotype_2 SAMN44524440 PRJNA1180610 2025-01-08
30 American beaver (hap1 2025)[IGV] Castor canadensis GCA_047511655.1_mCasCan1.hap1 SAMN45812786 PRJNA1197684 2025-02-10
31 American beaver (hap1v2 2025)[IGV] Castor canadensis GCA_047511655.2_mCasCan1.hap1v2 SAMN45812786 PRJNA1197684 2025-02-10
32 American beaver (hap2 2025)[IGV] Castor canadensis GCA_047511605.1_mCasCan1.hap2 SAMN45812786 PRJNA1197685 2025-02-10
33 American beaver (hap2v2 2025)[IGV] Castor canadensis GCA_047511605.2_mCasCan1.hap2v2 SAMN45812786 PRJNA1197685 2025-02-10
34 American beaver (mCasCan1.hap1v2 2025)[IGV] Castor canadensis GCF_047511655.1_mCasCan1.hap1v2 SAMN45812786 PRJNA1197684 2025-02-10
35 American beaver (Ward 2017 refseq)[IGV] Castor canadensis GCF_001984765.1_C.can_genome_v1.0 SAMN06187566 PRJNA359140 2017-02-04
36 American bison (2014 refseq)[IGV] Bison bison bison GCF_000754665.1_Bison_UMD1.0 SAMN02947321 PRJNA257088 2014-10-08
37 American black bear (L20-20 2025 refseq)[IGV] Ursus americanus GCF_024610735.1_mUrsAme1.1.p SAMN29046565 PRJNA851483 2025-07-14
38 American black bear (L20-20 alternate hap 2022)[IGV] Ursus americanus GCA_024610745.1_mUrsAme1.0.a SAMN29046565 PRJNA851482 2022-08-10
39 American black bear (v1 L20-20 primary hap 2022 genbank)[IGV] Ursus americanus GCA_024610735.1_mUrsAme1.0.p SAMN29046565 PRJNA851483 2022-08-10
40 American black bear (v2 L20-20 2025 genbank)[IGV] Ursus americanus GCA_024610735.2_mUrsAme1.1.p SAMN29046565 PRJNA851483 2025-07-14
41 American black bear (UA15103 2021)[IGV] Ursus americanus GCF_020975775.1_gsc_jax_bbear_1.0 SAMN22511336 PRJNA319796 2021-11-24
42 American mink (2018)[IGV] Neogale vison GCA_900108605.1_NNQGG.v01 SAMEA4493372 PRJEB15663 2018-01-02
43 American mink (hap1 2024)[IGV] Neogale vison GCA_964106545.1_mNeoVis2.hap1.1 SAMEA112468126 PRJEB76007 2024-06-06
44 American mink (hap2 2024)[IGV] Neogale vison GCA_964106205.1_mNeoVis2.hap2.1 SAMEA112468126 PRJEB76008 2024-06-06
45 American mink (M4711 2021 Dalhousie U)[IGV] Neogale vison GCF_020171115.1_ASM_NN_V1 SAMN19764019 PRJNA741394 2021-09-29
46 American mink (M4711 2021)[IGV] Neogale vison GCA_020171115.1_ASM_NN_V1 SAMN19764019 PRJNA741394 2021-09-29
47 American pika (hap1 2023 genbank)[IGV] Ochotona princeps GCA_030435755.1_mOchPri1.hap1 SAMN35822658 PRJNA986273 2023-07-13
48 American pika (hap1 2023 refseq)[IGV] Ochotona princeps GCF_030435755.1_mOchPri1.hap1 SAMN35822658 PRJNA986273 2023-07-13
49 American pika (hap2 2023)[IGV] Ochotona princeps GCA_030435715.1_mOchPri1.hap2 SAMN35822658 PRJNA986274 2023-07-13
50 American pika 3.0 (2012 Broad refseq)[IGV] Ochotona princeps GCF_000292845.1_OchPri3.0 SAMN00767999 PRJNA74593 2012-08-27
51 American pika 4.0 (UAM:Mamm:113957 2020)[IGV] Ochotona princeps GCF_014633375.1_OchPri4.0 SAMN15664588 PRJNA649356 2020-09-21
52 American red squirrel (v2 hap1 2026)[IGV] Tamiasciurus hudsonicus grahamensis GCA_057930835.1_mTamHud2.hap1 SAMN57316949 PRJNA1454669 2026-06-04
53 American red squirrel (v2 hap2 2026)[IGV] Tamiasciurus hudsonicus grahamensis GCA_057931055.1_mTamHud2.hap2 SAMN57316949 PRJNA1454668 2026-06-04
54 American red squirrel (v3 hap1 2026)[IGV] Tamiasciurus hudsonicus GCA_057657825.1_mTamHud3.hap1 SAMN57316951 PRJNA1454672 2026-05-15
55 American red squirrel (v3 hap2 2026)[IGV] Tamiasciurus hudsonicus GCA_057657875.1_mTamHud3.hap2 SAMN57316951 PRJNA1454671 2026-05-15
56 American wolverine (FN33715 2022)[IGV] Gulo gulo luscus GCA_024509225.1_Gulo_gulo_luscus_F-V1.0 SAMN16725402 PRJNA675847 2022-08-04
57 Amur tiger (TaeGuk 2013 refseq)[IGV] Panthera tigris altaica GCF_000464555.1_PanTig1.0 SAMN02086964 PRJNA182708 2013-09-06
58 Angolan free-tailed bat[IGV] Mops condylurus GCA_043748645.2_mMopCon1.pri SAMN33550911 PRJNA940057 2026-05-15
59 Angolan free-tailed bat (Cote d'Ivoire 20210831_DDa 2024)[IGV] Mops condylurus GCA_043748645.1_ASM4374864v1 SAMN33550911 PRJNA940057 2024-10-24
60 Angolan free-tailed bat (Cote d'Ivoire 20210831_DDa alternate hap 2024)[IGV] Mops condylurus GCA_043748605.1_ASM4374860v1 SAMN33550911 PRJNA940056 2024-10-24
61 Angus cow (Angus x Brahman F1 Angus haplotype 2018)[IGV] Bos indicus x Bos taurus GCA_003369685.2_UOA_Angus_1 SAMN08473802 PRJNA432857 2018-11-30
62 Antarctic minke whale[IGV] Balaenoptera bonaerensis GCA_000978805.1_ASM97880v1 SAMD00016608 PRJDB1465 2015-03-18
63 Antillean ghost-faced bat[IGV] Mormoops blainvillei GCA_004026545.1_MorMeg_v1_BIUU SAMN07678133 PRJNA399472 2019-01-16
64 aoudad[IGV] Ammotragus lervia GCA_002201775.1_ALER1.0 SAMN06233879 PRJNA438286 2017-06-20
65 Arabian camel (Drom800 2019 refseq)[IGV] Camelus dromedarius GCF_000803125.2_CamDro3 SAMN03252735 PRJNA269274 2019-10-07
66 Arabian camel (hap2 2024)[IGV] Camelus dromedarius GCA_036321565.1_mCamDro1.hap2 SAMN39296380 PRJNA1064427 2024-01-31
67 Arabian camel (paternal hap 2024 genbank)[IGV] Camelus dromedarius GCA_036321535.1_mCamDro1.pat SAMN39296380 PRJNA1064426 2024-01-31
68 Arabian camel (paternal hap 2024 refseq)[IGV] Camelus dromedarius GCF_036321535.1_mCamDro1.pat SAMN39296380 PRJNA1064426 2024-01-31
69 Arctic fox (Blue_001 2021 refseq)[IGV] Vulpes lagopus GCF_018345385.1_ASM1834538v1 SAMN16815335 PRJNA678849 2021-05-12
70 Arctic ground squirrel (AGS 11-09-20 2018)[IGV] Urocitellus parryii GCF_003426925.1_ASM342692v1 SAMN09469529 PRJNA477386 2018-08-24
71 Arctic ground squirrel (hap1 2024)[IGV] Urocitellus parryii GCA_045843805.1_mUroPar1.hap1 SAMN44461866 PRJNA1178113 2024-12-13
72 Arctic ground squirrel (hap2 2024)[IGV] Urocitellus parryii GCA_045843765.1_mUroPar1.hap2 SAMN44461866 PRJNA1178114 2024-12-12
73 Arctic ground squirrel (mUroPar1hap1 2024)[IGV] Urocitellus parryii GCF_045843805.1_mUroPar1.hap1 SAMN44461866 PRJNA1178113 2024-12-13
74 Argentine brown bat (hap1 2026)[IGV] Neoeptesicus furinalis GCA_054644455.1_mEptFur1.hap1 SAMN50460173 PRJNA1302024 2026-01-22
75 Argentine brown bat (hap2 2026)[IGV] Neoeptesicus furinalis GCA_054644445.1_mEptFur1.hap2 SAMN50460173 PRJNA1302023 2026-01-22
76 Asian palm civet[IGV] Paradoxurus hermaphroditus GCA_004024585.1_ParHer_v1_BIUU SAMN07678048 PRJNA399364 2019-01-15
77 Asiatic brush-tailed porcupine (POm2014 2021)[IGV] Hystrix brachyura GCA_016801275.1_DSBC_Hbra_1.0 SAMN10059123 PRJNA490787 2021-02-02
78 Asiatic elephant (hap1 2025)[IGV] Elephas maximus indicus GCA_051911825.1_mEleMax1.hap1 SAMN29174328 PRJNA1247387 2025-08-11
79 Asiatic elephant (hap2 2025)[IGV] Elephas maximus indicus GCA_051911805.1_mEleMax1.hap2 SAMN29174328 PRJNA1247389 2025-08-11
80 Asiatic elephant (mEleMax1 alternate hap 2022)[IGV] Elephas maximus indicus GCA_024166345.1_mEleMax1_alternate_haplotype SAMN29174328 PRJNA850270 2022-07-05
81 Asiatic elephant (mEleMax1 primary hap 2022)[IGV] Elephas maximus indicus GCF_024166365.1_mEleMax1_primary_haplotype SAMN29174328 PRJNA850184 2022-07-06
82 Asiatic mouflon (Amuf_v1 2020)[IGV] Ovis orientalis GCA_014523465.1_CAU_Oori_1.0 SAMN15835291 PRJNA529571 2020-09-11
83 Asiatic tapir (hap1 2023)[IGV] Tapirus indicus GCA_031878655.1_mTapInd1.hap1 SAMN37096863 PRJNA1010471 2023-09-25
84 Asiatic tapir (hap2 2023)[IGV] Tapirus indicus GCA_031878705.1_mTapInd1.hap2 SAMN37096863 PRJNA1010472 2023-09-25
85 ass (donkey Dezhou 2021)[IGV] Equus asinus GCF_016077325.2_ASM1607732v2 SAMN08939908 PRJNA431818 2021-10-14
86 ass (donkey Dezhou DZ240498 2026)[IGV] Equus asinus GCA_054375355.1_CAU_T2T_donkey1.0 SAMN51101332 PRJNA1316099 2026-01-06
87 ass (donkey D_3611 2024)[IGV] Equus asinus GCF_041296235.1_EquAss-T2T_v2 SAMN42823850 PRJNA1135234 2024-12-12
88 ass (donkey Maral har 2015 refseq)[IGV] Equus asinus GCF_001305755.1_ASM130575v1 SAMN03010633 PRJNA259598 2015-10-02
89 Atlantic white-sided dolphin (hap1.1 2024)[IGV] Leucopleurus acutus GCF_964270905.1_mLagAcu1.hap1.1 SAMEA114493133 PRJEB80626 2024-09-29
90 Atlantic white-sided dolphin (mLagAcu1.hap1.1 2024)[IGV] Leucopleurus acutus GCA_964270905.1_mLagAcu1.hap1.1 SAMEA114493133 PRJEB80626 2024-09-29
91 Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024)[IGV] Leucopleurus acutus GCA_964270935.1_mLagAcu1.hap2.1 SAMEA114493133 PRJEB80627 2024-09-30
92 Australian echidna (mTacAcu1 alternate hap 2020)[IGV] Tachyglossus aculeatus GCA_015852515.1_mTacAcu1.alt SAMN12634963 PRJNA607238 2020-12-08
93 Australian echidna (mTacAcu1 primary hap 2020)[IGV] Tachyglossus aculeatus GCF_015852505.1_mTacAcu1.pri SAMN12634963 PRJNA607237 2020-12-09
94 Australian echidna (primary hap 2020)[IGV] Tachyglossus aculeatus GCA_015852505.1_mTacAcu1.pri SAMN12634963 PRJNA607237 2020-12-09
95 Bactrian camel (Alxa 2014 refseq)[IGV] Camelus bactrianus GCF_000767855.1_Ca_bactrianus_MBC_1.0 SAMN02953968 PRJNA183605 2014-10-23
96 Bactrian camel YW-2024 2025[IGV] Camelus bactrianus GCF_048773025.1_ASM4877302v1 SAMN43543267 PRJNA1158569 2025-03-21
97 banded mongoose[IGV] Mungos mungo GCA_004023785.1_MunMun_v1_BIUU SAMN07678097 PRJNA399406 2019-01-15
98 bank vole[IGV] Myodes glareolus GCF_902806735.1_Bank_vole1_10x SAMEA5971946 PRJEB34572 2020-02-22
99 bank vole (2345 2026)[IGV] Myodes glareolus GCF_055000105.1_ASM5500010v1 SAMN36988307 PRJNA1005562 2026-02-04
100 bank vole (alternate hap 2026)[IGV] Myodes glareolus GCA_982192455.1_mMyoGla1.1_alternate_haplotype SAMEA7702027 PRJEB109084 2026-03-08
101 Bank vole (primary hap 2026 genbank)[IGV] Myodes glareolus GCA_982192425.1_mMyoGla1.1 SAMEA7702027 PRJEB109083 2026-03-08
102 bank vole (primary hap 2026 refseq)[IGV] Myodes glareolus GCF_982192425.1_mMyoGla1.1 SAMEA7702027 PRJEB109083 2026-03-08
103 banner-tailed kangaroo rat[IGV] Dipodomys spectabilis GCF_019054845.1_ASM1905484v1 SAMN19232064 PRJNA730493 2021-06-29
104 banteng 2023[IGV] Bos javanicus GCF_032452875.1_ARS-OSU_banteng_1.0 SAMN35998690 PRJNA988033 2023-10-11
105 bat A.intermedius (hap2 2024)[IGV] Artibeus intermedius GCA_038363225.1_mArtInt1.hap2 SAMN40002248 PRJNA1080655 2024-04-22
106 bat C.sowelli (hap1 2025)[IGV] Carollia sowelli GCA_051307085.1_mCarSow1.hap1 SAMN48528213 PRJNA1263557 2025-07-14
107 bat C.sowelli (hap2 2025)[IGV] Carollia sowelli GCA_051307135.1_mCarSow1.hap2 SAMN48528213 PRJNA1263558 2025-07-14
108 bat G.keenani (hap1 2025)[IGV] Gardnerycteris keenani GCA_050655435.1_mGarKee1.hap1 SAMN48711179 PRJNA1267154 2025-06-02
109 bat G.keenani (hap2 2025)[IGV] Gardnerycteris keenani GCA_050655445.1_mGarKee1.hap2 SAMN48711179 PRJNA1267155 2025-06-02
110 bat H.larvatus (alternate hap 2023)[IGV] Hipposideros larvatus GCA_031878685.1_mHipLar1.alt SAMN36277597 PRJNA1006759 2023-09-25
111 bat H.larvatus (China 20210929_DDb primary hap 2024)[IGV] Hipposideros larvatus GCA_043727955.1_ASM4372795v1 SAMN33388264 PRJNA937064 2024-10-24
112 bat M.microtis (hap1 2025)[IGV] Micronycteris microtis GCA_051107205.1_mMicMic1.hap1 SAMN49262579 PRJNA1278802 2025-06-26
113 bat M.microtis (hap2 2025)[IGV] Micronycteris microtis GCA_051107335.1_mMicMic1.hap2 SAMN49262579 PRJNA1278803 2025-06-26
114 beluga whale (Cook Inlet, Alaska, USA DL-CIB17-05 2020)[IGV] Delphinapterus leucas GCA_009917745.1_GSC_cook_1.0 SAMN12238539 PRJNA553680 2020-01-07
115 beluga whale (GAN/ISIS: 26980492/103006 v3 2019)[IGV] Delphinapterus leucas GCF_002288925.2_ASM228892v3 SAMN06216270 PRJNA360851 2019-08-29
116 big brown bat (BU_THK_EF1 2012)[IGV] Eptesicus fuscus GCF_000308155.1_EptFus1.0 SAMN00767986 PRJNA72449 2012-11-08
117 big brown bat (TK198812 2023 genbank)[IGV] Eptesicus fuscus GCA_027574615.1_DD_ASM_mEF_20220401 SAMN30608903 PRJNA868286 2023-01-09
118 big brown bat (TK198812 2023 refseq)[IGV] Eptesicus fuscus GCF_027574615.1_DD_ASM_mEF_20220401 SAMN30608903 PRJNA868286 2023-01-09
119 bighorn sheep (Bighorn MfBH-ARS-UI-01 2024)[IGV] Ovis canadensis GCA_042477335.2_ARS-UI_OviCan_v2 SAMN42787568 PRJNA967002 2024-10-18
120 bighorn sheep (BS48 2019)[IGV] Ovis canadensis GCA_004026945.1_OviCan_v1_BIUU SAMN07678102 PRJNA399410 2019-01-16
121 bighorn sheep (v2 Bighorn MfBH-ARS-UI-01 2024)[IGV] Ovis canadensis GCF_042477335.2_ARS-UI_OviCan_v2 SAMN42787568 PRJNA967002 2024-10-18
122 bilby (mMagLag1 2024 genbank)[IGV] Macrotis lagotis GCA_037893015.1_bilby.v1.9.chrom.fasta SAMN39300766 PRJNA1049866 2024-04-04
123 bilby (mMagLag1 2024 refseq)[IGV] Macrotis lagotis GCF_037893015.1_bilby.v1.9.chrom.fasta SAMN39300766 PRJNA1049866 2024-04-04
124 black and rufous elephant shrew (mRhyPet1hap1 2024)[IGV] Rhynchocyon petersi GCA_043290085.1_mRhyPet1.hap1 SAMN43274963 PRJNA1150232 2024-10-17
125 black and rufous elephant shrew (mRhyPet1hap2 2024)[IGV] Rhynchocyon petersi GCA_043290065.1_mRhyPet1.hap2 SAMN43274963 PRJNA1150233 2024-10-17
126 black flying fox[IGV] Pteropus alecto GCF_000325575.1_ASM32557v1 SAMN01103203 PRJNA171993 2013-12-04
127 black rat[IGV] Rattus rattus GCF_011064425.1_Rrattus_CSIRO_v1 SAMN12855339 PRJNA574245 2020-03-04
128 black rhinoceros (alternate hap 2021)[IGV] Diceros bicornis minor GCA_020826835.1_mDicBic1.pat.decon SAMN22047685 PRJNA773943 2021-11-10
129 black rhinoceros (BS38 2019 Broad)[IGV] Diceros bicornis GCA_004027315.1_DicBicMic_v1_BIUU SAMN07678078 PRJNA399388 2019-01-16
130 black rhinoceros (primary hap 2021 refseq)[IGV] Diceros bicornis minor GCF_020826845.1_mDicBic1.mat.cur SAMN22047685 PRJNA773944 2021-11-10
131 black-footed cat[IGV] Felis nigripes GCA_004023925.1_FelNig_v1_BIUU SAMN07678084 PRJNA399394 2019-01-15
132 black-footed ferret (SB6536 2022)[IGV] Mustela nigripes GCF_022355385.1_MUSNIG.SB6536 SAMN15012758 PRJNA634921 2022-02-24
133 Black-footed pygmy rice rat (hap1 2026)[IGV] Oligoryzomys nigripes GCA_057876635.1_mOliNig2.hap1 SAMN59321932 PRJNA1463265 2026-06-03
134 Black-footed pygmy rice rat (hap2 2026)[IGV] Oligoryzomys nigripes GCA_057876665.1_mOliNig2.hap2 SAMN59321932 PRJNA1463264 2026-06-03
135 black-lipped pika[IGV] Ochotona curzoniae GCF_017591425.1_NIBS_Ocur_1.0 SAMN13876228 PRJNA601872 2021-03-26
136 Blainville's beaked whale (alternate hap 2022)[IGV] Mesoplodon densirostris GCA_025094165.1_mMesDen1_alternate_haplotype SAMN29828597 PRJNA873679 2022-09-08
137 Blainville's beaked whale (primary hap 2022 refseq)[IGV] Mesoplodon densirostris GCF_025265405.1_mMesDen1_primary_haplotype SAMN29828597 PRJNA873668 2022-09-19
138 Blasius's horseshoe bat (hap1 2026)[IGV] Rhinolophus blasii GCA_057428245.1_mRhiBla1.hap1 SAMN55323438 PRJNA1422839 2026-05-11
139 Blasius's horseshoe bat (hap2 2026)[IGV] Rhinolophus blasii GCA_057428315.1_mRhiBla1.hap2 SAMN55323438 PRJNA1422840 2026-05-11
140 blue whale (alternate hap JJ_BM4_2016_0621 2019)[IGV] Balaenoptera musculus GCA_008658375.1_mBalMus1_alternate SAMN12287136 PRJNA554523 2019-09-23
141 blue whale (JJ_BM4_2016_0621 primary hap 2020)[IGV] Balaenoptera musculus GCA_009873245.3_mBalMus1.pri.v3 SAMN12287136 PRJNA554522 2020-10-02
142 Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020)[IGV] Balaenoptera musculus GCA_008658375.2_mBalMus1.alt.v2 SAMN12287136 PRJNA554523 2020-09-30
143 blue whale (JJ_BM4_2016_0621 v3 primary hap 2020)[IGV] Balaenoptera musculus GCF_009873245.2_mBalMus1.pri.v3 SAMN12287136 PRJNA554522 2020-10-02
144 bobcat (Redwood Valley CCGP_SWC_20201006 alternate hap 2022)[IGV] Lynx rufus GCA_022079275.1_mLynRuf1.a SAMN23391104 PRJNA782956 2022-02-08
145 bobcat (Redwood Valley CCGP_SWC_20201006 primary hap 2022)[IGV] Lynx rufus GCF_022079265.1_mLynRuf1.p SAMN23391104 PRJNA782957 2022-02-08
146 boreal woodland reindeer (boreal CA-31 2023)[IGV] Rangifer tarandus caribou GCA_019903745.2_ULRtarCaribou_2v2 SAMN19775459 PRJNA739179 2023-04-17
147 Botta's pocket gopher (bottae MVZ:Mamm:240275 alternate hap 2022)[IGV] Thomomys bottae GCA_024803775.1_mThoBot1.0.a SAMN29044214 PRJNA851165 2022-08-31
148 Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022)[IGV] Thomomys bottae GCA_024803745.1_mThoBot1.0.p SAMN29044214 PRJNA851166 2022-09-01
149 Botta's pocket gopher (hap1 2023)[IGV] Thomomys bottae GCA_031878675.1_mThoBot2.hap1 SAMN37300244 PRJNA1013538 2023-09-25
150 Botta's pocket gopher (hap2 2023)[IGV] Thomomys bottae GCA_031878665.1_mThoBot2.hap2 SAMN37300244 PRJNA1013537 2023-09-25
151 boutu (hap1 2024)[IGV] Inia geoffrensis GCA_036417435.1_mIniGeo1.hap1 SAMN32797734 PRJNA925497 2024-02-06
152 boutu (hap2 2024)[IGV] Inia geoffrensis GCA_036417475.1_mIniGeo1.hap2 SAMN32797734 PRJNA925498 2024-02-06
153 Brahman cow (Angus x Brahman F1 Brahman haplotype 2018)[IGV] Bos indicus x Bos taurus GCF_003369695.1_UOA_Brahman_1 SAMN08473802 PRJNA432857 2018-11-30
154 Brandt's bat[IGV] Myotis brandtii GCF_000412655.1_ASM41265v1 SAMN01801565 PRJNA178678 2013-06-28
155 Brazilian free-tailed bat (alternate hap 2023)[IGV] Tadarida brasiliensis GCA_030848815.1_DD_mTadBra1_alt SAMN35075070 PRJNA972446 2023-08-22
156 Brazilian free-tailed bat (primary hap 2023)[IGV] Tadarida brasiliensis GCA_030848825.1_DD_mTadBra1_pri SAMN35075070 PRJNA972445 2023-08-22
157 Brazilian guinea pig[IGV] Cavia aperea GCA_000688575.1_CavAp1.0 SAMN02252454 PRJNA212237 2014-01-21
158 Brazilian tapir[IGV] Tapirus terrestris GCA_004025025.1_TapTer_v1_BIUU SAMN07678114 PRJNA399422 2019-01-15
159 brown bear (GAN/ISIS:MIG12 v2 2018)[IGV] Ursus arctos horribilis GCF_003584765.2_ASM358476v2 SAMN09907428 PRJNA487641 2018-09-20
160 brown bear (v2.0 North America Adak 2023)[IGV] Ursus arctos GCF_023065955.2_UrsArc2.0 SAMN25977855 PRJNA807323 2023-05-22
161 brown big-eared bat (alternate hap 2023)[IGV] Plecotus auritus GCA_963455325.1_mPleAur1.1_alternate_haplotype SAMEA110056142 PRJEB65990 2023-09-21
162 brown big-eared bat (primary hap 2023 genbank)[IGV] Plecotus auritus GCA_963455305.1_mPleAur1.1 SAMEA110056142 PRJEB65991 2023-09-20
163 brown big-eared bat (primary hap 2023 refseq)[IGV] Plecotus auritus GCF_963455305.1_mPleAur1.1 SAMEA110056142 PRJEB65991 2023-09-14
164 brown-throated sloth[IGV] Bradypus variegatus GCA_004027775.1_BraVar_v1_BIUU SAMN07678054 PRJNA399370 2019-01-16
165 bush duiker (CMD-5126 2019)[IGV] Sylvicapra grimmia GCA_006408735.1_CMD SAMN08714508 PRJNA438286 2019-06-24
166 cactus mouse (2023)[IGV] Peromyscus eremicus GCF_949786415.1_PerEre_H2_v1 SAMEA112839419 PRJEB60916 2023-04-08
167 California mouse (IS 2022)[IGV] Peromyscus californicus insignis GCF_007827085.1_ASM782708v3 SAMN10698868 PRJNA513219 2022-04-27
168 California sea lion (alternate hap 2019)[IGV] Zalophus californianus GCA_009762295.1_mZalCal1.alt SAMN12368149 PRJNA559674 2019-12-17
169 California sea lion (LMU 2018 refseq)[IGV] Zalophus californianus GCF_900631625.1_zalCal2.2 SAMEA5145493 PRJEB30031 2018-12-07
170 California sea lion (mZalCal1 alternate hap 2020)[IGV] Zalophus californianus GCA_009762295.2_mZalCal1.alt.v2 SAMN12368149 PRJNA559674 2020-06-12
171 California sea lion (primary hap 2020)[IGV] Zalophus californianus GCA_009762305.2_mZalCal1.pri.v2 SAMN12368149 PRJNA559673 2020-07-14
172 California sea lion (v2 primary hap 2020)[IGV] Zalophus californianus GCF_009762305.2_mZalCal1.pri.v2 SAMN12368149 PRJNA559673 2020-07-14
173 California vole (kernensis MVZ Mamm 240107 alternate hap 2023)[IGV] Microtus californicus GCA_028537755.1_mMicCal1.0.hap2 SAMN31837211 PRJNA904289 2023-02-07
174 California vole (kernensis MVZ Mamm 240107 primary hap 2023)[IGV] Microtus californicus GCA_028537955.1_mMicCal1.0.hap1 SAMN31837211 PRJNA904290 2023-02-07
175 Canada lynx (alternate hap LIC74 2019)[IGV] Lynx canadensis GCA_007474575.1_mLynCan4_v1.alt SAMN09948483 PRJNA489108 2019-07-25
176 Canada lynx (LIC74 primary hap 2020)[IGV] Lynx canadensis GCA_007474595.2_mLynCan4.pri.v2 SAMN09948483 PRJNA489107 2020-07-14
177 Canada lynx (LIC74 v2 alternate hap 2020)[IGV] Lynx canadensis GCA_007474575.2_mLynCan4.alt.v2 SAMN09948483 PRJNA489108 2020-06-12
178 Canada lynx (LIC74 v2 primary hap 2020)[IGV] Lynx canadensis GCF_007474595.2_mLynCan4.pri.v2 SAMN09948483 PRJNA489107 2020-07-14
179 Cantor's roundleaf bat[IGV] Hipposideros galeritus GCA_004027415.1_HipGal_v1_BIUU SAMN07678026 PRJNA399442 2019-01-16
180 Cape elephant shrew[IGV] Elephantulus edwardii GCF_000299155.1_EleEdw1.0 SAMN00749966 PRJNA74589 2012-10-10
181 Cape golden mole (2012 Broad)[IGV] Chrysochloris asiatica GCF_000296735.1_ChrAsi1.0 SAMN00744889 PRJNA74591 2012-09-19
182 Cape hairy bat (hap1 2026)[IGV] Myotis tricolor GCA_054824995.1_mMyoTri1.hap1 SAMN54208108 PRJNA1390882 2026-01-29
183 Cape hairy bat (hap2 2026)[IGV] Myotis tricolor GCA_054825045.1_mMyoTri1.hap2 SAMN54208108 PRJNA1390881 2026-01-29
184 Cape rock hyrax (Dallas Zoo Isis #01D731 2014)[IGV] Procavia capensis GCA_000152225.2_Pcap_2.0 SAMN02894304 PRJNA13972 2014-12-16
185 Cape rock hyrax (US060 2019 Broad)[IGV] Procavia capensis GCA_004026925.1_ProCapCap_v1_BIUU SAMN07678107 PRJNA399414 2019-01-16
186 capybara[IGV] Hydrochoerus hydrochaeris GCA_004027455.1_HydHyd_v1_BIUU SAMN07678143 PRJNA399400 2019-01-16
187 carabao (swamp buffalo K-KA32 2023)[IGV] Bubalus kerabau GCF_029407905.1_PCC_UOA_SB_1v2 SAMN31703457 PRJNA901059 2023-03-31
188 cattle (Hereford L1 Dominette 01449 42190680 v2.0 2023 USDA)[IGV] Bos taurus GCF_002263795.3_ARS-UCD2.0 SAMN03145444 PRJNA391427 2023-07-01
189 cattle (Hereford UMD_3.1.1 2014)[IGV] Bos taurus GCF_000003055.6_Bos_taurus_UMD_3.1.1 SAMN02898106 PRJNA32899 2014-11-25
190 Chacoan peccary (BS20 v2 2019 Broad)[IGV] Catagonus wagneri GCA_004024745.2_CatWag_v2_BIUU_UCD SAMN07678067 PRJNA399378 2019-07-15
191 cheetah (Ajub_Pintada_27869175 2022)[IGV] Acinonyx jubatus GCF_027475565.1_VMU_Ajub_asm_v1.0 SAMN29432198 PRJNA854353 2022-12-28
192 cheetah (Rico 2018)[IGV] Acinonyx jubatus GCF_003709585.1_Aci_jub_2 SAMN09699341 PRJNA482183 2018-10-22
193 Chinese forest musk deer (Sichuan 2022)[IGV] Moschus berezovskii GCF_022376915.1_ASM2237691v1 SAMN20589840 PRJNA752261 2022-02-23
194 Chinese hamster (17A/GY CHO 2020)[IGV] Cricetulus griseus GCF_003668045.3_CriGri-PICRH-1.0 SAMN07140313 PRJNA389969 2020-06-11
195 Chinese hamster (CHO v1 2011 BGI)[IGV] Cricetulus griseus GCF_000223135.1_CriGri_1.0 SAMN02981352 PRJNA69991 2011-08-23
196 Chinese hamster (CHO v2 2017 Eagle Genomics Ltd)[IGV] Cricetulus griseus GCA_900186095.1_CHOK1S_HZDv1 SAMEA104116709 PRJEB21211 2017-06-30
197 Chinese hamster (CHO-K1 CHOZN v2.4 2022)[IGV] Cricetulus griseus GCA_026545065.1_CHOZN_v2.4 SAMN29793812 PRJNA859676 2022-11-30
198 Chinese pangolin (2020 Yunnan U)[IGV] Manis pentadactyla GCF_014570555.1_YNU_ManPten_2.0 SAMN11464812 PRJNA529513 2020-09-15
199 Chinese pangolin (hap1 2023 genbank)[IGV] Manis pentadactyla GCA_030020395.1_mManPen7.hap1 SAMN32757332 PRJNA924339 2023-05-23
200 Chinese pangolin (hap1 2023 refseq)[IGV] Manis pentadactyla GCF_030020395.1_mManPen7.hap1 SAMN32757332 PRJNA924339 2023-05-23
201 Chinese pangolin (hap2 2023)[IGV] Manis pentadactyla GCA_030020945.1_mManPen7.hap2 SAMN32757332 PRJNA924340 2023-05-16
202 Chinese pangolin (MPE899 2014 WashU)[IGV] Manis pentadactyla GCA_000738955.1_M_pentadactyla-1.1.1 SAMN01943338 PRJNA20331 2014-08-11
203 Chinese rufous horseshoe bat[IGV] Rhinolophus sinicus GCA_001888835.1_ASM188883v1 SAMN04038064 PRJNA294852 2016-12-04
204 Chinese rufous horseshoe bat (RSC01 2024 genbank)[IGV] Rhinolophus sinicus GCA_036562045.1_ASM3656204v1 SAMN38606679 PRJNA1048078 2024-06-26
205 Chinese rufous horseshoe bat (RSC01 2024 refseq)[IGV] Rhinolophus sinicus GCF_036562045.2_ASM3656204v1 SAMN38606679 PRJNA1048078 2024-06-26
206 Chinese tree shrew (2013 BGI)[IGV] Tupaia chinensis GCF_000334495.1_TupChi_1.0 SAMN01084043 PRJNA169406 2013-01-31
207 Chinese tree shrew (KIZ-2021 2023)[IGV] Tupaia chinensis GCA_033439345.1_KIZ_version_2 SAMN37278373 PRJNA1012869 2023-11-09
208 Chiriquinan serotine (hap1 2025)[IGV] Neoeptesicus chiriquinus GCA_054100705.1_mEptChi1.hap1 SAMN52625897 PRJNA1339244 2025-12-18
209 Chiriquinan serotine (hap2 2025)[IGV] Neoeptesicus chiriquinus GCA_054099605.1_mEptChi1.hap2 SAMN52625897 PRJNA1339243 2025-12-18
210 chiru[IGV] Pantholops hodgsonii GCA_000400835.1_PHO1.0 SAMN00990743 PRJNA72465 2013-05-28
211 clouded leopard (mNeoNeb1 alternate hap 2023)[IGV] Neofelis nebulosa GCA_028018655.1_mNeoNeb1.alt SAMN31801981 PRJNA915743 2023-01-26
212 clouded leopard (mNeoNeb1 primary hap 2023 refseq)[IGV] Neofelis nebulosa GCF_028018385.1_mNeoNeb1.pri SAMN31801981 PRJNA915742 2023-01-31
213 common bottlenose dolphin (maternal 2020)[IGV] Tursiops truncatus GCA_011762535.1_mTurTru1.mat SAMN12326775 PRJNA561885 2020-03-25
214 common bottlenose dolphin (maternal hap 2024)[IGV] Tursiops truncatus GCA_011762595.2_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2024-12-12
215 common bottlenose dolphin (maternal Y refseq 2020)[IGV] Tursiops truncatus GCF_011762595.1_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2020-03-27
216 common bottlenose dolphin (MMES2002162SC 2016 refseq)[IGV] Tursiops truncatus GCF_001922835.1_NIST_Tur_tru_v1 SAMN06114300 PRJNA356464 2016-12-28
217 common bottlenose dolphin (mTurTru1 2024)[IGV] Tursiops truncatus GCF_011762595.2_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2024-12-12
218 common bottlenose dolphin (paternal 2020)[IGV] Tursiops truncatus GCA_011762515.1_mTurTru1.pat SAMN12326775 PRJNA561884 2020-03-25
219 common brushtail (alternate hap 2020)[IGV] Trichosurus vulpecula GCA_011100645.1_mTriVul1.alt SAMN12629507 PRJNA562013 2020-03-09
220 common brushtail (refseq 2020)[IGV] Trichosurus vulpecula GCF_011100635.1_mTriVul1.pri SAMN12629507 PRJNA562014 2020-03-10
221 common dormouse[IGV] Muscardinus avellanarius GCF_963383645.1_mMusAve1.1 SAMEA110180654 PRJEB65338 2023-08-24
222 common pipistrelle (2020)[IGV] Pipistrellus pipistrellus GCA_903992545.1_mPipPip1.1 SAMEA994724 PRJEB39564 2020-08-06
223 common pipistrelle (alternate hap 2020)[IGV] Pipistrellus pipistrellus GCA_903992515.1_mPipPip1.1_alternate_haplotype SAMEA994724 PRJEB39565 2020-08-04
224 common pipistrelle (Broad 2019)[IGV] Pipistrellus pipistrellus GCA_004026625.1_PipPip_v1_BIUU SAMN07678120 PRJNA399427 2019-01-16
225 common pipistrelle (hap1.1 2025)[IGV] Pipistrellus pipistrellus GCA_965203405.1_mPipPip2.hap1.1 SAMEA9921453 PRJEB86923 2025-03-15
226 common pipistrelle (hap1.2 2025)[IGV] Pipistrellus pipistrellus GCA_965203405.2_mPipPip2.hap1.2 SAMEA9921453 PRJEB86923 2025-04-09
227 common pipistrelle (hap2.1 2025)[IGV] Pipistrellus pipistrellus GCA_965204225.1_mPipPip2.hap2.1 SAMEA9921453 PRJEB86922 2025-03-15
228 common pipistrelle (hap2.2 2025)[IGV] Pipistrellus pipistrellus GCA_965204225.2_mPipPip2.hap2.2 SAMEA9921453 PRJEB86922 2025-04-09
229 common thicket rat (MVZ Mamm 221001 2021)[IGV] Grammomys dolichurus GCA_019843835.1_ASM1984383v1 SAMN16477139 PRJNA669840 2021-09-01
230 common vampire bat (v2 HL8 alternate hap 2022 genbank)[IGV] Desmodus rotundus GCA_022682395.2_HLdesRot8B.1 SAMN24116476 PRJNA789527 2022-03-24
231 common vampire bat (v2 HL8 primary hap 2022 refseq)[IGV] Desmodus rotundus GCF_022682495.2_HLdesRot8A.1 SAMN24116476 PRJNA789528 2022-03-24
232 common vampire bat (v3 DRU21DN04 2018)[IGV] Desmodus rotundus GCF_002940915.2_ASM294091v3 SAMN07783852 PRJNA414273 2018-02-23
233 common warthog (WHEZ1 2021)[IGV] Phacochoerus africanus GCF_016906955.1_ROS_Pafr_v1 SAMN15809474 PRJNA656957 2021-02-19
234 common wombat[IGV] Vombatus ursinus GCF_900497805.2_bare-nosed_wombat_genome_assembly SAMEA4791334 PRJEB27783 2018-12-10
235 Corsac fox (zsh2022 2023)[IGV] Vulpes corsac GCA_030463245.1_zhanglab2022 SAMN30841973 PRJNA880477 2023-07-18
236 cotton mouse (hap1 2026)[IGV] Peromyscus gossypinus allapaticola GCA_057877385.1_mPerGos1.hap1 SAMN57188880 PRJNA1455831 2026-06-03
237 cotton mouse (hap2 2026)[IGV] Peromyscus gossypinus allapaticola GCA_057877455.1_mPerGos1.hap2 SAMN57188880 PRJNA1455830 2026-06-03
238 coyote (coyote_06102 2023)[IGV] Canis latrans GCA_034620425.1_Cla-1 SAMN34121417 PRJNA953635 2023-12-27
239 creeping vole[IGV] Microtus oregoni GCF_018167655.1_Mior012 SAMN18478481 PRJNA505851 2021-04-26
240 crested porcupine[IGV] Hystrix cristata GCA_004026905.1_HysCri_v1_BIUU SAMN07678090 PRJNA399401 2019-01-16
241 crested rat (2021)[IGV] Lophiomys imhausi GCA_907164525.1_mLopImh1.curated_primary_1811 SAMEA8491833 PRJEB44074 2021-06-03
242 Crete spiny mouse (2024)[IGV] Acomys minous GCA_964271855.1_mAcoMin1 SAMEA112751364 PRJEB77133 2024-10-03
243 Crete spiny mouse (2025 genbank)[IGV] Acomys minous GCA_964271855.5_mAcoMin1.4 SAMEA112751364 PRJEB77133 2025-07-07
244 Crete spiny mouse (2025 refseq)[IGV] Acomys minous GCF_964271855.1_mAcoMin1.4 SAMEA112751364 PRJEB77133 2025-07-07
245 Cucacao Myotis (hap1 2026)[IGV] Myotis nesopolus GCA_054855985.1_mMyoNes1.hap1 SAMN54684658 PRJNA1403628 2026-01-30
246 Cucacao Myotis (hap2 2026)[IGV] Myotis nesopolus GCA_054855975.1_mMyoNes1.hap2 SAMN54684658 PRJNA1403629 2026-01-30
247 Cuvier's beaked whale[IGV] Ziphius cavirostris GCA_004364475.1_ZipCav_v1_BIUU SAMN07678128 PRJNA399469 2019-03-22
248 cyclops roundleaf bat (Cote d'Ivoire 20210929_DDa alternate hap 2024)[IGV] Doryrhina cyclops GCA_043880225.1_ASM4388022v1 SAMN33372470 PRJNA936820 2024-10-25
249 cyclops roundleaf bat (Cote d'Ivoire 20210929_DDa primary hap 2024)[IGV] Doryrhina cyclops GCA_043880285.1_ASM4388028v1 SAMN33372470 PRJNA936821 2024-10-28
250 Damara mole-rat DMR 1.0 (2014 BGI)[IGV] Fukomys damarensis GCF_000743615.1_DMR_v1.0 SAMN02339281 PRJNA190641 2014-09-04
251 Damara mole-rat DMR 1.0 HiC (2020 DNA Zoo)[IGV] Fukomys damarensis GCF_012274545.1_DMR_v1.0_HiC SAMN10973724 PRJNA604608 2020-04-13
252 Darling's horseshoe bat (hap1 2026)[IGV] Rhinolophus darlingi GCA_057427945.1_mRhiDar1.hap1 SAMN55323435 PRJNA1422836 2026-05-11
253 Darling's horseshoe bat (hap2 2026)[IGV] Rhinolophus darlingi GCA_057428265.1_mRhiDar1.hap2 SAMN55323435 PRJNA1422837 2026-05-11
254 dassie-rat[IGV] Petromus typicus GCA_004026965.1_PetTyp_v1_BIUU SAMN07678021 PRJNA399347 2019-01-16
255 Daubenton's bat (alternate hap 2023)[IGV] Myotis daubentonii GCA_963242275.1_mMyoDau2.1_alternate_haplotype SAMEA9921455 PRJEB65247 2023-08-20
256 Daubenton's bat (hap1.2 2025)[IGV] Myotis daubentonii GCA_963259705.2_mMyoDau2.hap1.2 SAMEA9921455 PRJEB65246 2025-04-09
257 Daubenton's bat (hap2.2 2025)[IGV] Myotis daubentonii GCA_963242275.2_mMyoDau2.hap2.2 SAMEA9921455 PRJEB65247 2025-04-09
258 Daubenton's bat (primary hap 2023 refseq)[IGV] Myotis daubentonii GCF_963259705.1_mMyoDau2.1 SAMEA9921455 PRJEB65246 2023-08-20
259 Daurian ground squirrel[IGV] Spermophilus dauricus GCA_002406435.1_ASM240643v1 SAMN07711139 PRJNA215874 2017-09-28
260 David's myotis bat[IGV] Myotis davidii GCF_000327345.1_ASM32734v1 SAMN01103204 PRJNA171994 2012-12-20
261 Davis's round-eared bat (hap1 2025)[IGV] Lophostoma evote GCA_051307075.1_mLopEvo1.hap1 SAMN47591065 PRJNA1242490 2025-07-14
262 Davis's round-eared bat (hap2 2025)[IGV] Lophostoma evote GCA_051307065.1_mLopEvo1.hap2 SAMN47591065 PRJNA1242491 2025-07-14
263 degu (3935 2012 refseq)[IGV] Octodon degus GCF_000260255.1_OctDeg1.0 SAMN00769067 PRJNA74595 2012-05-01
264 desert hamster (2022)[IGV] Phodopus roborovskii GCF_943737965.1_PHOROB SAMEA9952654 PRJEB47530 2022-07-01
265 Desmarest's hutia[IGV] Capromys pilorides GCA_004027915.1_CapPil_v1_BIUU SAMN07678066 PRJNA399377 2019-01-16
266 dingo (2020 Alpine COOINDA U.NSW)[IGV] Canis lupus dingo GCF_012295265.1_UNSW_AlpineDingo_1.0 SAMN14395261 PRJNA613141 2020-04-15
267 dingo (Sandy 2020 James Cook U)[IGV] Canis lupus dingo GCF_003254725.2_ASM325472v2 SAMN09397198 PRJNA475652 2020-09-11
268 dog (Basenji MU ID 185726 2019)[IGV] Canis lupus familiaris GCA_004886185.2_Basenji_breed-1.1 SAMN10749847 PRJNA512874 2019-08-16
269 dog (Basenji UNSW-BAS-2019 2021)[IGV] Canis lupus familiaris GCA_013276365.2_UNSW_CanFamBas_1.2 SAMN14380863 PRJNA612738 2021-02-23
270 dog (Bernese Mountain Dog BD 2023)[IGV] Canis lupus familiaris GCA_031010765.1_BD_1.0 SAMN31138971 PRJNA886700 2023-08-31
271 dog (Bernese Mountain Dog OD 2023)[IGV] Canis lupus familiaris GCA_031010635.1_OD_1.0 SAMN31138972 PRJNA886700 2023-08-31
272 dog (boxer Tasha 2011)[IGV] Canis lupus familiaris GCF_000002285.3_CanFam3.1 SAMN02953603 PRJNA13179 2011-11-02
273 dog (boxer Tasha 2020)[IGV] Canis lupus familiaris GCF_000002285.5_Dog10K_Boxer_Tasha SAMN02953603 PRJNA13179 2020-10-06
274 dog (Cairn Terrier CA611 2023)[IGV] Canis lupus familiaris GCA_031010295.1_CA611_1.0 SAMN31138973 PRJNA886700 2023-08-31
275 dog (German shepard Mischka 2020)[IGV] Canis lupus familiaris GCF_011100685.1_UU_Cfam_GSD_1.0 SAMN13230619 PRJNA587469 2020-03-10
276 dog (German Shepherd Nala 2020)[IGV] Canis lupus familiaris GCA_008641055.3_ASM864105v3 SAMN12574852 PRJNA560310 2020-04-14
277 dog (Labrador retriever 2023)[IGV] Canis lupus familiaris GCA_031165255.1_Yella_v2 SAMN35774271 PRJNA984662 2023-09-07
278 dog (labrador SID07034 2020)[IGV] Canis lupus familiaris GCF_014441545.1_ROS_Cfam_1.0 SAMN14478636 PRJNA615959 2020-09-03
279 dog (poodle 2003)[IGV] Canis lupus familiaris GCA_000181415.1_ASM18141v1 SAMN03004377 PRJNA10628 2003-09-27
280 domestic cat (Abyssinian Cinnamon 2017 WashU)[IGV] Felis catus GCF_000181335.3_Felis_catus_9.0 SAMN02953640 PRJNA16726 2017-11-20
281 domestic cat (Abyssinian Cinnamon 2021 WashU)[IGV] Felis catus GCA_000181335.5_felCat9.1_X SAMN02953640 PRJNA16726 2021-10-01
282 domestic cat (Abyssinian Cinnamon 2021)[IGV] Felis catus GCA_000181335.6_felCat9.2_X SAMN02953640 PRJNA16726 2021-10-01
283 domestic cat (Fca126 2021 Texas A&M U)[IGV] Felis catus GCF_018350175.1_F.catus_Fca126_mat1.0 SAMN19729387 PRJNA684600 2021-05-13
284 domestic cattle (Mongolian 80415 2024)[IGV] Bos taurus GCA_043882115.1_ASM4388211v1 SAMN42835594 PRJNA1140538 2024-10-25
285 domestic cattle (Tuli MAZUNGA 2024)[IGV] Bos taurus GCA_040285425.1_UOA_Tuli_1 SAMN43074753 PRJNA1117662 2024-06-25
286 domestic cattle (Wagyu 3DWFS0412 2024)[IGV] Bos taurus GCA_040286185.1_UOA_Wagyu_1 SAMN43074752 PRJNA1117663 2024-06-25
287 domestic ferret (JIRA1106 JCVI 2020)[IGV] Mustela putorius furo GCF_011764305.1_ASM1176430v1.1 SAMN13896405 PRJNA580247 2020-03-27
288 domestic ferret (Sable 2011 Broad)[IGV] Mustela putorius furo GCA_000239315.1_MusPutFurMale1.0 SAMN00761641 PRJNA78213 2011-12-21
289 domestic guinea pig (051 PalLab524CR 2023)[IGV] Cavia porcellus GCF_034190915.1_mCavPor4.1 SAMN37383695 PRJNA1016386 2023-12-07
290 domestic guinea pig (2N 2008 refseq)[IGV] Cavia porcellus GCF_000151735.1_Cavpor3.0 SAMN02981223 PRJNA12583 2008-03-03
291 domestic yak (maiwa yakHY00 2019)[IGV] Bos grunniens GCA_005887515.3_BosGru3.1 SAMN11569574 PRJNA540974 2019-06-10
292 domestic yak (Pamir PY7600 2026)[IGV] Bos grunniens GCF_055505025.1_Bosgru_T2T1.0 SAMN54740643 PRJNA1404693 2026-02-25
293 dugong (hap1 mDugDug1 2023)[IGV] Dugong dugon GCA_030035585.1_mDugDug1.hap1 SAMN33212336 PRJNA932812 2023-05-18
294 dugong (hap2 mDugDug1 2023)[IGV] Dugong dugon GCA_030020955.1_mDugDug1.hap2 SAMN33212336 PRJNA932821 2023-05-16
295 dwarf bonneted bat (hap1 2026)[IGV] Eumops nanus GCA_058972175.1_mEumNan1.hap1 SAMN61084920 PRJNA1481612 2026-07-06
296 dwarf bonneted bat (hap2 2026)[IGV] Eumops nanus GCA_058971805.1_mEumNan1.hap2 SAMN61084920 PRJNA1481611 2026-07-06
297 dwarf fruit-eating bat (hap1 2025)[IGV] Dermanura phaeotis GCA_051107565.1_mDerPha1.hap1 SAMN48779402 PRJNA1269106 2025-06-26
298 dwarf fruit-eating bat (hap2 2025)[IGV] Dermanura phaeotis GCA_051107595.1_mDerPha1.hap2 SAMN48779402 PRJNA1269107 2025-06-26
299 dwarf mongoose[IGV] Helogale parvula GCA_004023845.1_HelPar_v1_BIUU SAMN07678086 PRJNA399396 2019-01-15
300 eastern cottontail (primary hap 2023)[IGV] Sylvilagus floridanus GCA_949820135.1_mSylFlo1.10 SAMEA13607423 PRJEB61298 2023-04-19
301 eastern European house mouse (PWK_PhJ v2 2022)[IGV] Mus musculus musculus GCA_921998335.2_PWK_PhJ_v3 SAMEA9544189 PRJEB47108 2022-07-01
302 eastern mole[IGV] Scalopus aquaticus GCA_004024925.1_ScaAqu_v1_BIUU SAMN07678045 PRJNA399361 2019-01-15
303 eastern quoll[IGV] Dasyurus viverrinus GCA_020854095.1_UniMelb_DasViv_v1.0 SAMN21032600 PRJNA758704 2021-11-12
304 eastern spiny mouse (2021)[IGV] Acomys dimidiatus GCA_907164435.1_mAcoDim1_REL_1905 SAMEA8478151 PRJEB44012 2021-07-06
305 eastern woodrat (hap1 2025)[IGV] Neotoma floridana GCA_050000055.1_mNeoFlo1.hap1 SAMN47859846 PRJNA1248495 2025-04-29
306 eastern woodrat (hap2 2025)[IGV] Neotoma floridana GCA_050000045.1_mNeoFlo1.hap2 SAMN47859846 PRJNA1248494 2025-04-29
307 Egyptian rousette (1219 2016 Boston U)[IGV] Rousettus aegyptiacus GCF_001466805.2_Raegyp2.0 SAMN04287759 PRJNA303181 2016-03-17
308 Egyptian rousette (primary hap 2025)[IGV] Rousettus aegyptiacus GCA_014176215.2_mRouAeg1.pri SAMN14734550 PRJNA628585 2025-12-17
309 Egyptian rousette (v1 2020 refseq)[IGV] Rousettus aegyptiacus GCF_014176215.1_mRouAeg1.p SAMN14734550 PRJNA628585 2020-08-07
310 Egyptian spiny mouse (US019 2019)[IGV] Acomys cahirinus GCA_004027535.1_AcoCah_v1_BIUU SAMN07678032 PRJNA399339 2019-01-16
311 Eld's deer (hap1 2026)[IGV] Rucervus eldii thamin GCA_054824865.1_mRucEld1.hap1 SAMN54150481 PRJNA1389689 2026-01-29
312 Eld's deer (hap2 2026)[IGV] Rucervus eldii thamin GCA_054824845.1_mRucEld1.hap2 SAMN54150481 PRJNA1389690 2026-01-29
313 elk (wapiti)[IGV] Cervus canadensis GCF_019320065.1_ASM1932006v1 SAMN15814149 PRJNA657053 2021-07-26
314 ermine (2020)[IGV] Mustela erminea GCF_009829155.1_mMusErm1.Pri SAMN12611999 PRJNA561931 2020-01-03
315 ermine (alternate hap 2020)[IGV] Mustela erminea GCA_009829165.1_mMusErm1.alt SAMN12611999 PRJNA561930 2020-01-03
316 ermine (hap1.1 2025)[IGV] Mustela erminea GCA_965636865.1_mMusErm2.hap1.1 SAMEA113398842 PRJEB91368 2025-07-09
317 ermine (hap2.1 2025)[IGV] Mustela erminea GCA_965636855.1_mMusErm2.hap2.1 SAMEA113398842 PRJEB91369 2025-07-09
318 ermine (primary hap 2020)[IGV] Mustela erminea GCA_009829155.1_mMusErm1.Pri SAMN12611999 PRJNA561931 2020-01-03
319 Eurasian badger (2021)[IGV] Meles meles GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated SAMEA7524400 PRJEB49352 2021-12-18
320 Eurasian badger (v3.2 2022)[IGV] Meles meles GCA_922984935.2_mMelMel3.2_paternal_haplotype SAMEA7524400 PRJEB49353 2022-03-23
321 Eurasian beaver (alternate hap 2025)[IGV] Castor fiber GCA_977035955.1_mCasFib1.1_alternate_haplotype SAMEA9654421 PRJEB102694 2025-11-13
322 Eurasian beaver (primary hap 2025)[IGV] Castor fiber GCA_977036005.1_mCasFib1.1 SAMEA9654421 PRJEB102695 2025-11-13
323 Eurasian field mouse (2024)[IGV] Apodemus agrarius GCA_964023405.1_mApoAgr2.1 SAMEA112797479 PRJEB74496 2024-04-12
324 Eurasian red squirrel (alternate hap 2019)[IGV] Sciurus vulgaris GCA_902685485.1_mSciVul1.1_alternate_haplotype SAMEA994733 PRJEB35379 2019-11-26
325 Eurasian red squirrel (primary hap 2019)[IGV] Sciurus vulgaris GCF_902686455.1_mSciVul1.2 SAMEA994733 PRJEB35380 2019-11-20
326 Eurasian red squirrel (v1.2 2020)[IGV] Sciurus vulgaris GCA_902686455.2_mSciVul1.2 SAMEA994733 PRJEB35380 2020-07-31
327 Eurasian river otter (2020)[IGV] Lutra lutra GCF_902655055.1_mLutLut1.2 SAMEA994731 PRJEB35339 2020-07-31
328 Eurasian river otter (alternate hap 2019)[IGV] Lutra lutra GCA_902653095.1_mLutLut1.1_alternate_haplotype SAMEA994731 PRJEB35338 2019-12-09
329 Eurasian river otter (primary hap 2020)[IGV] Lutra lutra GCA_902655055.2_mLutLut1.2 SAMEA994731 PRJEB35339 2020-07-31
330 Eurasian water vole (alternate hap 2020)[IGV] Arvicola amphibius GCA_903992525.1_mArvAmp1.1_alternate_haplotype SAMEA994740 PRJEB39549 2020-08-04
331 Eurasian water vole (primary hap 2021)[IGV] Arvicola amphibius GCA_903992535.2_mArvAmp1.2 SAMEA994740 PRJEB39550 2021-05-15
332 Eurasian water vole (v2 2021)[IGV] Arvicola amphibius GCF_903992535.2_mArvAmp1.2 SAMEA994740 PRJEB39550 2021-05-15
333 European badger[IGV] Meles meles GCF_922984935.2_mMelMel3.2_paternal_haplotype SAMEA7524400 PRJEB49353 2022-03-23
334 European free-tailed bat (hap1.1 2025)[IGV] Tadarida teniotis GCA_976988885.1_mTadTen1.hap1.1 SAMEA115534555 PRJEB98822 2025-11-08
335 European free-tailed bat (hap2.1 2025)[IGV] Tadarida teniotis GCA_976988855.1_mTadTen1.hap2.1 SAMEA115534555 PRJEB98821 2025-10-10
336 European ground squirrel (alternate hap 2024)[IGV] Spermophilus citellus GCA_964194095.1_mSpeCit3.1_alternate_haplotype SAMEA10332752 PRJEB76893 2024-06-27
337 European ground squirrel (primary hap 2024)[IGV] Spermophilus citellus GCF_964194105.1_mSpeCit3.1 SAMEA10332752 PRJEB76892 2024-06-28
338 European hare (LE1 primary hap 2023)[IGV] Lepus europaeus GCF_033115175.1_mLepTim1.pri SAMN33984520 PRJNA1009711 2023-10-31
339 European harvest mouse[IGV] Micromys minutus GCF_963924665.1_mMicMin1.1 SAMEA112468042 PRJEB72093 2024-01-28
340 European harvest mouse (alternate hap 2024)[IGV] Micromys minutus GCA_963924645.1_mMicMin1.1_alternate_haplotype SAMEA112468042 PRJEB72092 2024-01-29
341 European harvest mouse (primary hap 2024)[IGV] Micromys minutus GCA_963924665.1_mMicMin1.1 SAMEA112468042 PRJEB72093 2024-01-29
342 European mink (alternate hap 2023)[IGV] Mustela lutreola GCA_030435785.1_mMusLut2.alt SAMN35784236 PRJNA984927 2023-07-11
343 European mink (primary hap 2023 refseq)[IGV] Mustela lutreola GCF_030435805.1_mMusLut2.pri SAMN35784236 PRJNA984926 2023-07-13
344 European mole (hap1 2024)[IGV] Talpa europaea GCA_964194135.1_mTalEur1.hap1.1 SAMEA112468127 PRJEB76907 2024-06-28
345 European mole (hap2 2024)[IGV] Talpa europaea GCA_964194205.1_mTalEur1.hap2.1 SAMEA112468127 PRJEB76906 2024-06-27
346 European mole (hap1.1 2024)[IGV] Talpa europaea GCF_964194135.1_mTalEur1.hap1.1 SAMEA112468127 PRJEB76907 2024-06-28
347 European pine marten (primary hap 2023)[IGV] Martes martes GCF_963455335.1_mMarMar1.1 SAMEA14268932 PRJEB65998 2023-09-14
348 European pine marten (alternate hap 2023)[IGV] Martes martes GCA_963455355.1_mMarMar1.1_alternate_haplotype SAMEA14268932 PRJEB65999 2023-09-21
349 European pine marten (primary hap 2023)[IGV] Martes martes GCA_963455335.1_mMarMar1.1 SAMEA14268932 PRJEB65998 2023-09-20
350 European shrew (alternate hap 2023)[IGV] Sorex araneus GCA_027595995.1_mSorAra2.alt SAMN32477717 PRJNA916524 2023-01-06
351 European shrew (GB8-d 2012)[IGV] Sorex araneus GCF_000181275.1_SorAra2.0 SAMN00210854 PRJNA13689 2012-08-27
352 European shrew (primary hap 2023 genbank)[IGV] Sorex araneus GCA_027595985.1_mSorAra2.pri SAMN32477717 PRJNA916523 2023-01-09
353 European shrew (primary hap 2023 refseq)[IGV] Sorex araneus GCF_027595985.1_mSorAra2.pri SAMN32477717 PRJNA916523 2023-01-09
354 European snow vole (alternate hap 2023)[IGV] Chionomys nivalis GCA_950005115.1_mChiNiv1.1_alternate_haplotype SAMEA13217622 PRJEB61597 2023-04-29
355 European snow vole (primary hap 2023 refseq)[IGV] Chionomys nivalis GCF_950005125.1_mChiNiv1.1 SAMEA13217622 PRJEB61598 2023-05-01
356 European suslik (primary hap 2024)[IGV] Spermophilus citellus GCA_964194105.1_mSpeCit3.1 SAMEA10332752 PRJEB76892 2024-06-28
357 European woodmouse (2022 refseq)[IGV] Apodemus sylvaticus GCF_947179515.1_mApoSyl1.1 SAMEA7702024 PRJEB56948 2022-10-28
358 European woodmouse (alternate hap 2022)[IGV] Apodemus sylvaticus GCA_947179525.1_mApoSyl1.1_alternate_haplotype SAMEA7702024 PRJEB56947 2022-11-01
359 fallow deer (Ldn47 2023)[IGV] Dama dama GCF_033118175.1_ASM3311817v1 SAMN31886425 PRJNA905851 2023-11-02
360 fallow deer (maternal hap SK-2024 2025)[IGV] Dama dama GCA_048126745.1_DamDam1_v1.mat SAMN36735489 PRJNA1148282 2025-02-27
361 fallow deer (paternal hap SK-2024 2025)[IGV] Dama dama GCA_048127045.1_DamDam1_v1.pat SAMN36735489 PRJNA1148283 2025-02-27
362 false killer whale (hap1 2024 genbank)[IGV] Pseudorca crassidens GCA_039906515.1_mPseCra1.hap1 SAMN41253811 PRJNA1108771 2024-05-31
363 false killer whale (hap1 2024 refseq)[IGV] Pseudorca crassidens GCF_039906515.1_mPseCra1.hap1 SAMN41253811 PRJNA1108771 2024-05-31
364 false killer whale (hap2 2024)[IGV] Pseudorca crassidens GCA_039906525.1_mPseCra1.hap2 SAMN41253811 PRJNA1108772 2024-05-31
365 fat dormouse (hap1.1 2026)[IGV] Glis glis GCA_986694645.1_mGliGli1.hap1.1 SAMEA120960992 PRJEB120828 2026-08-31
366 fat dormouse (US078 2019)[IGV] Glis glis GCA_004027185.1_GliGli_v1_BIUU SAMN07678015 PRJNA399435 2019-01-16
367 fat sand rat (mPsaObe1 2021)[IGV] Psammomys obesus GCF_907164565.1_mPsaObe1.curated_primary_1811 SAMEA8556771 PRJEB44074 2021-06-02
368 fat sand rat (Psa_ob012049795 2017)[IGV] Psammomys obesus GCA_002215935.1_ASM221593v1 SAMN06061930 PRJNA355058 2017-07-07
369 fat-tailed dunnart (SCR6 2025)[IGV] Sminthopsis crassicaudata GCF_048593235.1_ASM4859323v1 SAMN47327922 PRJNA1235423 2025-03-17
370 fat-tailed dunnart (SCR6 hap1 2025)[IGV] Sminthopsis crassicaudata GCA_048593235.1_ASM4859323v1 SAMN47327922 PRJNA1235423 2025-03-17
371 fat-tailed dunnart (SCR6 hap2 2025)[IGV] Sminthopsis crassicaudata GCA_048593295.1_ASM4859329v1 SAMN47327922 PRJNA1235422 2025-03-17
372 fin whale (hap1.1 2025)[IGV] Balaenoptera physalus GCA_965194825.1_mBalPhy2.hap1.1 SAMEA114493136 PRJEB86467 2025-03-10
373 fin whale (hap2.1 2025)[IGV] Balaenoptera physalus GCA_965194765.1_mBalPhy2.hap2.1 SAMEA114493136 PRJEB86466 2025-03-05
374 finback whale[IGV] Balaenoptera physalus GCF_965194825.1_mBalPhy2.hap1.1 SAMEA114493136 PRJEB86467 2025-03-10
375 fishing cat (Anna 2022 U Missouri)[IGV] Prionailurus viverrinus GCF_022837055.1_UM_Priviv_1.0 SAMN26586088 PRJNA815338 2022-04-08
376 Florida manatee (CSIC 2023)[IGV] Trichechus manatus latirostris GCA_030013775.1_ASM3001377v1 SAMN00632092 PRJNA939417 2023-05-15
377 Florida manatee (Lorelei 2012 refseq)[IGV] Trichechus manatus latirostris GCF_000243295.1_TriManLat1.0 SAMN00632092 PRJNA68243 2012-01-23
378 fossa[IGV] Cryptoprocta ferox GCA_004023885.1_CryFer_v1_BIUU SAMN07678074 PRJNA399384 2019-01-15
379 Gambian giant pouched rat[IGV] Cricetomys gambianus GCA_004027575.1_CriGam_v1_BIUU SAMN07678025 PRJNA399436 2019-01-16
380 gaur (Gaur_Henry_Doorly_Zoo_5443 2020)[IGV] Bos gaurus GCA_014182915.2_ARS_UOA_Gaur_1.1 SAMN05558794 PRJNA325061 2020-08-14
381 gayal (CVASU_BF_001 2021)[IGV] Bos frontalis GCA_017311355.1_CVASU_Gayal_001 SAMN16965583 PRJNA655910 2021-03-09
382 gayal (Nagaland 2019)[IGV] Bos frontalis GCA_007844835.1_NRC_Mithun_1 SAMN02689702 PRJNA241403 2019-08-05
383 Geoffroy's bat (hap1.1 2025)[IGV] Myotis emarginatus GCA_965115925.1_mMyoEma1.hap1.1 SAMEA115534660 PRJEB85111 2025-01-24
384 Geoffroy's bat (hap1.2 2025)[IGV] Myotis emarginatus GCA_965115925.2_mMyoEma1.hap1.2 SAMEA115534660 PRJEB85111 2025-04-14
385 Geoffroy's bat (hap2.1 2025)[IGV] Myotis emarginatus GCA_965115945.1_mMyoEma1.hap2.1 SAMEA115534660 PRJEB85110 2025-01-24
386 Geoffroy's bat (hap2.2 2025)[IGV] Myotis emarginatus GCA_965115945.2_mMyoEma1.hap2.2 SAMEA115534660 PRJEB85110 2025-04-14
387 Geoffroy's cat[IGV] Leopardus geoffroyi GCF_018350155.1_O.geoffroyi_Oge1_pat1.0 SAMN19729386 PRJNA684599 2021-05-13
388 Geoffroy's horseshoe bat (hap1 2026)[IGV] Rhinolophus clivosus GCA_054645015.1_mRhiCli1.hap1 SAMN54151084 PRJNA1389795 2026-01-22
389 Geoffroy's horseshoe bat (hap2 2026)[IGV] Rhinolophus clivosus GCA_054645025.1_mRhiCli1.hap2 SAMN54151084 PRJNA1389796 2026-01-22
390 giant anteater[IGV] Myrmecophaga tridactyla GCA_004026745.1_MyrTri_v1_BIUU SAMN07678098 PRJNA399407 2019-01-16
391 giant otter[IGV] Pteronura brasiliensis GCA_004024605.1_PteBra_v1_BIUU SAMN07678049 PRJNA399365 2019-01-15
392 giant panda (Jingjing v3 2020)[IGV] Ailuropoda melanoleuca GCF_002007445.2_ASM200744v3 SAMN04193337 PRJNA588422 2020-04-20
393 goat (v2 San Clemente 2016 USDA)[IGV] Capra hircus GCF_001704415.2_ARS1.2 SAMN03863711 PRJNA290100 2016-08-24
394 Gobi jerboa[IGV] Orientallactaga bullata GCA_004027895.1_AllBul_v1_BIUU SAMN07678035 PRJNA399447 2019-01-16
395 golden hamster (Baylor 2021)[IGV] Mesocricetus auratus GCF_017639785.1_BCM_Maur_2.0 SAMN18096087 PRJNA705675 2021-03-30
396 golden hamster (Broad 2013 refseq)[IGV] Mesocricetus auratus GCF_000349665.1_MesAur1.0 SAMN00769068 PRJNA77669 2013-03-29
397 golden jackal (CA01 2025)[IGV] Canis aureus GCF_053574225.1_VMU_Caureus_v.1.0 SAMN48380470 PRJNA1259920 2025-11-21
398 golden spiny mouse (2020 genbank)[IGV] Acomys russatus GCA_903995435.1_mAcoRus1.1 SAMEA104026431 PRJEB39768 2020-08-21
399 golden spiny mouse (2020 refseq)[IGV] Acomys russatus GCF_903995435.1_mAcoRus1.1 SAMEA104026431 PRJEB39768 2020-08-21
400 golden-mantled ground squirrel (hap1 2025 genbank)[IGV] Callospermophilus lateralis GCA_048772815.1_mCalLat2.hap1 SAMN47326584 PRJNA1235320 2025-03-21
401 golden-mantled ground squirrel (hap1 2025 refseq)[IGV] Callospermophilus lateralis GCF_048772815.1_mCalLat2.hap1 SAMN47326584 PRJNA1235320 2025-03-21
402 golden-mantled ground squirrel (hap2 2025 genbank)[IGV] Callospermophilus lateralis GCA_048772825.1_mCalLat2.hap2 SAMN47326584 PRJNA1235321 2025-03-21
403 golden-mantled ground squirrel (hap2 2025 refseq)[IGV] Callospermophilus lateralis GCF_048772825.1_mCalLat2.hap2 SAMN47326584 PRJNA1235321 2025-03-21
404 gracile shrew mole[IGV] Uropsilus gracilis GCA_004024945.1_UroGra_v1_BIUU SAMN07678046 PRJNA399362 2019-01-15
405 gray fox (Vermont ataVT051 2023)[IGV] Urocyon cinereoargenteus GCA_032313775.1_UCinereo1.0 SAMN37004681 PRJNA1005958 2023-10-04
406 gray seal (241Hg 2020)[IGV] Halichoerus grypus GCF_012393455.1_Tufts_HGry_1.1 SAMN13022322 PRJNA577240 2020-04-15
407 gray seal (hap1.1 2025)[IGV] Halichoerus grypus GCA_964656455.1_mHalGry1.hap1.1 SAMEA115427674 PRJEB83434 2025-01-02
408 gray seal (hap2.1 2025)[IGV] Halichoerus grypus GCA_964656465.1_mHalGry1.hap2.1 SAMEA115427674 PRJEB83433 2025-01-03
409 gray seal (mHalGry1.hap1.1 2025)[IGV] Halichoerus grypus GCF_964656455.1_mHalGry1.hap1.1 SAMEA115427674 PRJEB83434 2025-01-02
410 gray short-tailed opossum[IGV] Monodelphis domestica GCA_027887165.2_mMonDom1.pri SAMN31801966 PRJNA915592 2026-02-24
411 gray short-tailed opossum (mMonDom1 alternate hap 2023)[IGV] Monodelphis domestica GCA_027917375.1_mMonDom1.alt SAMN31801966 PRJNA915591 2023-01-17
412 gray short-tailed opossum (MonDom5 2007)[IGV] Monodelphis domestica GCF_000002295.2_MonDom5 SAMN02953611 PRJNA12561 2007-01-25
413 gray short-tailed opossum (v1 mMonDom1 primary hap 2023 refseq)[IGV] Monodelphis domestica GCF_027887165.1_mMonDom1.pri SAMN31801966 PRJNA915592 2023-01-18
414 gray short-tailed opossum (v2 mMonDom1 primary hap 2026 refseq)[IGV] Monodelphis domestica GCF_027887165.2_mMonDom1.pri SAMN31801966 PRJNA915592 2026-02-25
415 gray squirrel (2020)[IGV] Sciurus carolinensis GCF_902686445.1_mSciCar1.2 SAMEA994726 PRJEB35386 2020-07-31
416 gray squirrel (alternate hap 2019)[IGV] Sciurus carolinensis GCA_902685475.1_mSciCar1.1_alternate_haplotype SAMEA994726 PRJEB35385 2019-11-26
417 gray squirrel (primary hap 2020)[IGV] Sciurus carolinensis GCA_902686445.2_mSciCar1.2 SAMEA994726 PRJEB35386 2020-07-31
418 gray wolf (2021)[IGV] Canis lupus GCA_905319855.2_mCanLor1.2 SAMEA7532739 PRJEB43200 2021-03-26
419 gray wolf (alternate hap 2021)[IGV] Canis lupus GCA_905319845.1_mCanLor1.1_alternate_haplotype SAMEA7532739 PRJEB43199 2021-03-21
420 Great evening bat (hap2 2026)[IGV] Ia io GCA_054824975.1_mIaxIox2.hap2 SAMN54208066 PRJNA1390878 2026-01-29
421 great fruit-eating bat (hap1 2025)[IGV] Artibeus lituratus GCA_038363095.4_mArtLit1.hap1 SAMN40002247 PRJNA1080658 2025-05-01
422 great fruit-eating bat (v2 hap2 2024)[IGV] Artibeus lituratus GCA_038363175.2_mArtLit1.hap2 SAMN40002247 PRJNA1080657 2024-05-17
423 great fruit-eating bat (v2 hap1 2024)[IGV] Artibeus lituratus GCA_038363095.2_mArtLit.hap1 SAMN40002247 PRJNA1080658 2024-05-21
424 great fruit-eating bat (v3 hap2 2025)[IGV] Artibeus lituratus GCA_038363175.3_mArtLit1.hap2 SAMN40002247 PRJNA1080657 2025-04-29
425 great roundleaf bat (v2 ML-2016 2016)[IGV] Hipposideros armiger GCF_001890085.2_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06
426 greater bulldog bat[IGV] Noctilio leporinus GCA_004026585.1_NocLep_v1_BIUU SAMN07678134 PRJNA399473 2019-01-16
427 Greater cane rat[IGV] Thryonomys swinderianus GCA_004025085.1_ThrSwi_v1_BIUU SAMN07678129 PRJNA399470 2019-01-15
428 greater horseshoe bat (MPI-CBG alternate hap 2019)[IGV] Rhinolophus ferrumequinum GCA_004115295.1_mRhiFer1_v1.h SAMN09948510 PRJNA489105 2019-01-28
429 greater horseshoe bat (MPI-CBG mRhiFer1 2019)[IGV] Rhinolophus ferrumequinum GCA_004115265.3_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-17
430 greater horseshoe bat (v2 MPI-CBG 2019)[IGV] Rhinolophus ferrumequinum GCF_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16
431 greater Indian rhinoceros (Sample0755 2023)[IGV] Rhinoceros unicornis GCA_028646465.1_Rhinoceros_unicornis_HiC SAMN14122078 PRJNA512907 2023-02-16
432 greater mouse-eared bat[IGV] Myotis myotis GCA_014108235.2_mMyoMyo1.pri SAMN14734277 PRJNA628559 2026-01-22
433 greater mouse-eared bat (2020 Bat1K)[IGV] Myotis myotis GCF_014108235.1_mMyoMyo1.p SAMN14734277 PRJNA628559 2020-08-07
434 Greater mouse-tailed bat (20210906_DDa alternate hap 2024)[IGV] Rhinopoma microphyllum GCA_043880455.1_ASM4388045v1 SAMN33421188 PRJNA937901 2024-10-25
435 greater mouse-tailed bat (20210906_DDa primary hap 2024)[IGV] Rhinopoma microphyllum GCA_043880545.1_ASM4388054v1 SAMN33421188 PRJNA937902 2024-10-28
436 greater sac-winged bat (alternate hap 2024)[IGV] Saccopteryx bilineata GCA_036850925.1_mSacBil1_alt_phased_curated SAMN37288508 PRJNA1013201 2024-02-23
437 greater sac-winged bat (primary hap 2024 refseq)[IGV] Saccopteryx bilineata GCF_036850765.1_mSacBil1_pri_phased_curated SAMN37288508 PRJNA1013202 2024-02-26
438 greater spear-nosed bat (2021 Texas Tech U)[IGV] Phyllostomus hastatus GCF_019186645.2_TTU_PhHast_1.1 SAMN19371543 PRJNA733208 2021-07-09
439 Grevy's zebra (hap1 2026)[IGV] Equus grevyi GCA_057876975.1_mEquGre1.hap1 SAMN56729153 PRJNA1443397 2026-06-03
440 Grevy's zebra (hap2 2026)[IGV] Equus grevyi GCA_057877195.1_mEquGre1.hap2 SAMN56729153 PRJNA1443398 2026-06-03
441 grey whale[IGV] Eschrichtius robustus GCA_004363415.1_EscRob_v1_BIUU SAMN07678123 PRJNA399463 2019-03-22
442 grey whale (mEscRob2 alternate hap 2023)[IGV] Eschrichtius robustus GCA_028021475.1_mEscRob2.alt SAMN32629250 PRJNA921703 2023-01-26
443 grey whale (primary hap 2023 genbank)[IGV] Eschrichtius robustus GCA_028021215.1_mEscRob2.pri SAMN32629250 PRJNA921702 2023-01-31
444 grey whale (primary hap 2023 refseq)[IGV] Eschrichtius robustus GCF_028021215.1_mEscRob2.pri SAMN32629250 PRJNA921702 2023-01-31
445 hairy big-eared bat (US037 2019 Broad)[IGV] Micronycteris hirsuta GCA_004026765.1_MicHir_v1_BIUU SAMN07678146 PRJNA399354 2019-01-16
446 Hanaki's dwarf bat (v1 2024)[IGV] Pipistrellus hanaki GCA_964339955.1_mPipHan1.1 SAMEA115799862 PRJEB77246 2024-11-14
447 Hanaki's dwarf bat (v5 2025 genbank)[IGV] Pipistrellus hanaki GCA_964339955.5_mPipHan1.5 SAMEA115799862 PRJEB77246 2025-07-07
448 Hanaki's dwarf bat (v5 2025 refseq)[IGV] Pipistrellus hanaki GCF_964339955.1_mPipHan1.5 SAMEA115799862 PRJEB77246 2025-07-07
449 harbor porpoise (alternate hap 2024)[IGV] Phocoena phocoena GCA_963924725.1_mPhoPho1.1_alternate_haplotype SAMEA111380536 PRJEB72091 2024-01-31
450 harbor porpoise (primary hap 2024 genbank)[IGV] Phocoena phocoena GCA_963924675.1_mPhoPho1.1 SAMEA111380536 PRJEB72090 2024-01-29
451 harbor porpoise (primary hap 2024 refseq)[IGV] Phocoena phocoena GCF_963924675.1_mPhoPho1.1 SAMEA111380536 PRJEB72090 2024-01-29
452 harbor seal[IGV] Phoca vitulina GCF_004348235.1_GSC_HSeal_1.0 SAMN10150265 PRJNA494181 2019-02-11
453 Hawaiian monk seal (2021 Johns Hopkins U)[IGV] Neomonachus schauinslandi GCF_002201575.2_ASM220157v2 SAMN06841387 PRJNA384558 2021-10-20
454 hazel dormouse[IGV] Muscardinus avellanarius GCA_004027005.1_MusAve_v1_BIUU SAMN07678014 PRJNA399340 2019-01-16
455 hazel dormouse (alternate hap 2023)[IGV] Muscardinus avellanarius GCA_963383665.1_mMusAve1.1_alternate_haplotype SAMEA110180654 PRJEB65339 2023-08-27
456 hazel dormouse (primary hap 2023)[IGV] Muscardinus avellanarius GCA_963383645.1_mMusAve1.1 SAMEA110180654 PRJEB65338 2023-08-26
457 Heller's broad-nosed bat (hap1 2025)[IGV] Platyrrhinus helleri GCA_051107505.1_mPlaHel1.hap1 SAMN48779422 PRJNA1269108 2025-06-26
458 hippopotamus (BS01 2019 Broad)[IGV] Hippopotamus amphibius GCA_004027065.1_HipAmp_v1_BIUU SAMN07678089 PRJNA399399 2019-01-16
459 hippopotamus (HIP001 2018)[IGV] Hippopotamus amphibius GCA_002995585.1_ASM299558v1 SAMN07206988 PRJNA389773 2018-03-13
460 hippopotamus (mHipAmp2 hap1 2023)[IGV] Hippopotamus amphibius kiboko GCA_030028035.1_mHipAmp2.hap1 SAMN33342074 PRJNA936167 2023-05-17
461 hippopotamus (v2 hap2 2023 refseq)[IGV] Hippopotamus amphibius kiboko GCF_030028045.1_mHipAmp2.hap2 SAMN33342074 PRJNA936168 2023-05-18
462 hirola (BS46 2019 Broad)[IGV] Beatragus hunteri GCA_004027495.1_BeaHun_v1_BIUU SAMN07678065 PRJNA399375 2019-01-16
463 Hispaniolan solenodon[IGV] Solenodon paradoxus GCA_004363575.1_SolPar_v1_BIUU SAMN07678062 PRJNA399371 2019-03-22
464 hispid cotton rat[IGV] Sigmodon hispidus GCA_004025045.1_SigHis_v1_BIUU SAMN07678138 PRJNA399433 2019-01-15
465 hoary bat (Cryan_1219 primary hap 2025)[IGV] Lasiurus cinereus GCA_011751065.5_ASM1175106v5 SAMN13850695 PRJNA601154 2025-02-27
466 Hoffmann's two-fingered sloth[IGV] Choloepus hoffmanni GCA_000164785.2_C_hoffmanni-2.0.1 SAMN02146716 PRJNA30809 2014-09-30
467 Hog deer (hap2 2026)[IGV] Axis porcinus GCA_054883225.1_mAxiPor1.hap2 SAMN54763559 PRJNA1406174 2026-01-30
468 hog-nosed bat[IGV] Craseonycteris thonglongyai GCA_004027555.1_CraTho_v1_BIUU SAMN07678039 PRJNA399445 2019-01-16
469 Honduran yellow-shouldered bat (v2.1 Veracruz 20B 2020)[IGV] Sturnira hondurensis GCF_014824575.3_WHU_Shon_v2.1 SAMN12282880 PRJNA554734 2020-09-30
470 Honduran yellow-shouldered bat (v3 Veracruz 20B 2022)[IGV] Sturnira hondurensis GCF_014824575.4_ASM1482457v3 SAMN12282880 PRJNA554734 2022-12-28
471 horse (maternal 2024)[IGV] Equus caballus GCA_036418255.1_mEquCab1.mat SAMN39296386 PRJNA1064425 2024-02-07
472 horse (paternal hap 2024)[IGV] Equus caballus GCA_036426135.1_mEquCab1.pat SAMN39296386 PRJNA1064424 2024-02-07
473 horse (thoroughbred H_3958 2024)[IGV] Equus caballus GCF_041296265.1_TB-T2T SAMN42823849 PRJNA1135235 2024-08-16
474 horse (Twilight 2018)[IGV] Equus caballus GCF_002863925.1_EquCab3.0 SAMN02953672 PRJNA421018 2018-01-05
475 Hottentot golden mole (hap1 2026)[IGV] Amblysomus hottentotus GCA_054824725.1_mAmbHot1.hap1 SAMN54576575 PRJNA1401908 2026-01-29
476 Hottentot golden mole (hap2 2026)[IGV] Amblysomus hottentotus GCA_054824785.1_mAmbHot1.hap2 SAMN54576575 PRJNA1401909 2026-01-29
477 house mouse (129S1_SvImJv1 2016)[IGV] Mus musculus GCA_001624185.1_129S1_SvImJ_v1 SAMN04489811 PRJNA310854 2016-04-26
478 house mouse (129S1_SvImJ_v3 2022)[IGV] Mus musculus GCA_921998555.2_129S1_SvImJ_v3 SAMEA9544178 PRJEB47108 2022-07-01
479 house mouse (AKR_J v3 2022)[IGV] Mus musculus GCA_922000895.2_AKR_J_v3 SAMEA9544180 PRJEB47108 2022-07-01
480 house mouse (alternate hap 2023)[IGV] Mus musculus GCA_949316305.1_mMusMuc1.1_alternate_haplotype SAMEA112251260 PRJEB60145 2023-04-08
481 house mouse (A_J v3 2022)[IGV] Mus musculus GCA_921998355.2_A_J_v3 SAMEA9544179 PRJEB47108 2022-06-30
482 house mouse (BALB_cJ v3 2022)[IGV] Mus musculus GCA_921997145.2_BALB_cJ_v3 SAMEA9544181 PRJEB47108 2022-07-01
483 house mouse (C3H_HeJ v3 2022)[IGV] Mus musculus GCA_921997125.2_C3H_HeJ_v3 SAMEA9544182 PRJEB47108 2022-07-01
484 house mouse (C57BL/6J 2012)[IGV] Mus musculus GCA_000185105.2_MmusALLPATHS2 SAMN02981292 PRJNA59879 2012-08-29
485 house mouse (C57BL_6J T2T 2024)[IGV] Mus musculus GCA_964188535.1_C57BL_6J_T2T_v1 SAMEA115765483 PRJEB47108 2024-06-23
486 house mouse (CBA_J v3 2022)[IGV] Mus musculus GCA_921998905.2_CBA_J_v3 SAMEA9544184 PRJEB47108 2022-06-30
487 house mouse (DBA_2J v3 2022)[IGV] Mus musculus GCA_921998315.2_DBA_2J_v3 SAMEA9544177 PRJEB47108 2022-07-01
488 house mouse (FVB_NJ v3 2022)[IGV] Mus musculus GCA_921998635.2_FVB_NJ_v3 SAMEA9544185 PRJEB47108 2022-07-01
489 house mouse (LP_J v3 2022)[IGV] Mus musculus GCA_947599735.1_LP_J_v3 SAMEA9544186 PRJEB47108 2022-12-18
490 house mouse (NOD_ShiLtJ v3 2022)[IGV] Mus musculus GCA_921998325.2_NOD_ShiLtJ_v3 SAMEA9544187 PRJEB47108 2022-07-01
491 house mouse (NZO_HlLtJ v3 2022)[IGV] Mus musculus GCA_947593165.1_NZO_HlLtJ_v3 SAMEA9544188 PRJEB47108 2022-12-18
492 house mouse (primary hap 2023)[IGV] Mus musculus GCA_949316315.1_mMusMuc1.1 SAMEA112251260 PRJEB60144 2023-04-08
493 house mouse C57BL/6J 2020 GRC[IGV] Mus musculus GCF_000001635.27_GRCm39 n/a PRJNA20689 2020-06-24
494 house mouse C57BL_6NJ (2016)[IGV] Mus musculus GCA_001632555.1_C57BL_6NJ_v1 SAMN04489821 PRJNA310854 2016-05-09
495 house mouse C57BL_6NJ (2022)[IGV] Mus musculus GCA_921999865.2_C57BL_6NJ_v3 SAMEA9544183 PRJEB47108 2022-07-01
496 humpback whale (KW2013002 2024)[IGV] Megaptera novaeangliae GCA_041834305.1_ASM4183430v1 SAMN41059645 PRJNA1103780 2024-09-09
497 Iberian mole (v2.1 TD23 2020)[IGV] Talpa occidentalis GCF_014898055.3_MPIMG_talOcc4v2.1 SAMN10160270 PRJNA494291 2020-10-19
498 Incan shrew opossum (hap1 2026)[IGV] Lestoros inca GCA_054644205.1_mLesInc1.hap1 SAMN51985648 PRJNA1335355 2026-01-22
499 Incan shrew opossum (hap2 2026)[IGV] Lestoros inca GCA_054644215.1_mLesInc1.hap2 SAMN51985648 PRJNA1335356 2026-01-22
500 Indian false vampire[IGV] Lyroderma lyra GCA_004026885.1_MegLyr_v1_BIUU SAMN07678029 PRJNA399353 2019-01-16
501 Indian flying fox[IGV] Pteropus vampyrus GCF_902729225.1_Ma_sr-lr_union100 SAMEA5634742 PRJEB32728 2020-04-15
502 Indian short-nosed fruit bat (CYSPWHU 2023)[IGV] Cynopterus sphinx GCA_030015415.1_ASM3001541v1 SAMN26443391 PRJNA812996 2023-05-16
503 Indiana bat (hap1 2026)[IGV] Myotis sodalis GCA_057945255.1_mMyoSod1.hap1 SAMN56853512 PRJNA1446956 2026-06-04
504 Indiana bat (hap2 2026)[IGV] Myotis sodalis GCA_057945245.1_mMyoSod1.hap2 SAMN56853512 PRJNA1446955 2026-06-04
505 Indochinese shrew (US011 2019 Broad)[IGV] Crocidura indochinensis GCA_004027635.1_CroInd_v1_BIUU SAMN07678044 PRJNA399360 2019-01-16
506 Indus River dolphin[IGV] Platanista minor GCA_004363435.1_PlaMin_v1_BIUU SAMN07678149 PRJNA399467 2019-03-22
507 Inner Mongolia cashmere goat (2024)[IGV] Capra hircus GCA_041735815.1_T2T-goat2.0 SAMN41386043 PRJNA1136434 2024-09-04
508 intermediate fruit-eating bat (hap1 2024)[IGV] Artibeus intermedius GCA_038363145.1_mArtInt1.hap1 SAMN40002248 PRJNA1080656 2024-04-22
509 intermediate horseshoe bat (China 20211001_DDa alternate hap 2024)[IGV] Rhinolophus affinis GCA_043727925.1_ASM4372792v1 SAMN33388345 PRJNA937076 2024-10-24
510 intermediate horseshoe bat (China 20211001_DDa primary hap 2024)[IGV] Rhinolophus affinis GCA_043728065.1_ASM4372806v1 SAMN33388345 PRJNA937077 2024-10-24
511 intermediate roundleaf bat (primary hap 2023)[IGV] Hipposideros larvatus GCA_031876335.1_mHipLar1.pri SAMN36277597 PRJNA1006758 2023-09-25
512 jaguar[IGV] Panthera onca GCF_046562875.1_mPanOnc1_haplotype_2 SAMN44524170 PRJNA1180586 2025-01-08
513 jaguar (BS21 2019)[IGV] Panthera onca GCA_004023805.1_PanOnc_v1_BIUU SAMN07678103 PRJNA399411 2019-01-15
514 jaguar (hap1 2025 genbank)[IGV] Panthera onca GCA_046562885.1_mPanOnc1_haplotype_1 SAMN44524170 PRJNA1180582 2025-01-08
515 jaguar (hap1 2025 refseq)[IGV] Panthera onca GCF_046562885.1_mPanOnc1_haplotype_1 SAMN44524170 PRJNA1180582 2025-01-08
516 jaguar (hap1 2025)[IGV] Panthera onca GCA_046562885.2_mPanOnc1_haplotype_1 SAMN44524170 PRJNA1180582 2025-01-08
517 jaguar (Sample0147 2023)[IGV] Panthera onca GCF_028533385.1_Panthera_onca_HiC SAMN14122073 PRJNA512907 2023-02-09
518 jaguar (v1 hap2 2025)[IGV] Panthera onca GCA_046562875.1_mPanOnc1_haplotype_2 SAMN44524170 PRJNA1180586 2025-01-08
519 jaguar (v2 hap2 2025)[IGV] Panthera onca GCA_046562875.2_mPanOnc1_haplotype_2 SAMN44524170 PRJNA1180586 2025-01-08
520 jaguarundi[IGV] Herpailurus yagouaroundi GCF_014898765.1_PumYag SAMN14930875 PRJNA633021 2020-10-20
521 Jamaican fruit-eating bat (1a 2020 Wuhan U)[IGV] Artibeus jamaicensis GCF_014825515.1_WHU_Ajam_v2 SAMN12273914 PRJNA554589 2020-09-30
522 Jamaican fruit-eating bat (2021)[IGV] Artibeus jamaicensis GCF_021234435.1_CSHL_Jam_final SAMN21509358 PRJNA751559 2021-12-20
523 Japanese wild mouse (2022)[IGV] Mus musculus molossinus GCA_921999095.2_JF1_MsJ_v3 SAMEA9544190 PRJEB47108 2022-07-01
524 Java mouse-deer (US108 2019 Broad)[IGV] Tragulus javanicus GCA_004024965.1_TraJav_v1_BIUU SAMN07678116 PRJNA399456 2019-01-15
525 kiang (wild_1 2025)[IGV] Equus kiang GCA_052150635.1_ASM5215063v1 SAMN50296468 PRJNA1299250 2025-08-19
526 killer whale (2022)[IGV] Orcinus orca GCF_937001465.1_mOrcOrc1.1 SAMEA8800229 PRJEB52131 2022-05-03
527 killer whale (alternate hap 2022)[IGV] Orcinus orca GCA_937001455.1_mOrcOrc1.1_alternate_haplotype SAMEA8800229 PRJEB52132 2022-05-01
528 killer whale (Morgan 2013)[IGV] Orcinus orca GCF_000331955.2_Oorc_1.1 SAMN01180276 PRJNA167475 2013-01-31
529 killer whale (primary hap 2022)[IGV] Orcinus orca GCA_937001465.1_mOrcOrc1.1 SAMEA8800229 PRJEB52131 2022-05-03
530 klipspringer (KSP-560 2019)[IGV] Oreotragus oreotragus GCA_006410675.1_KSP SAMN08714489 PRJNA438286 2019-06-24
531 koala (Bilbo 61053 2022 genbank)[IGV] Phascolarctos cinereus GCA_003287225.2_phaCin_HiC SAMN06198159 PRJNA359763 2022-12-12
532 koala (Bilbo 61053 2022 refseq)[IGV] Phascolarctos cinereus GCF_003287225.1_phaCin_HiC SAMN06198159 PRJNA359763 2022-12-12
533 koala (Bilbo 61053 2025)[IGV] Phascolarctos cinereus GCA_003287225.3_mPhaCin1.pri SAMN06198159 PRJNA359763 2025-12-17
534 Kuhl's pipistrelle (2020)[IGV] Pipistrellus kuhlii GCF_014108245.1_mPipKuh1.p SAMN14734388 PRJNA628567 2020-08-07
535 Kuhl's pipistrelle (primary hap 2025)[IGV] Pipistrellus kuhlii GCA_014108245.2_mPipKuh1.pri SAMN14734388 PRJNA628567 2025-12-17
536 large flying fox[IGV] Pteropus vampyrus GCF_000151845.1_Pvam_2.0 SAMN02894360 PRJNA20325 2014-12-05
537 large Japanese field mouse (IB14-021 2017)[IGV] Apodemus speciosus GCA_002335545.1_Aspe_assembly01 SAMD00084465 PRJDB5914 2017-09-12
538 large tree shrew (BS70 2022)[IGV] Tupaia tana GCA_026018925.1_mTupTan1 SAMN07678117 PRJNA782001 2022-11-07
539 large tree shrew (BS70 2025)[IGV] Tupaia tana GCA_026018925.2_mTupTan1.pri SAMN07678117 PRJNA782001 2025-12-17
540 least weasel (hap1 2026)[IGV] Mustela nivalis vulgaris GCA_057128415.1_mMusNiv1.hap1 SAMN56641588 PRJNA1443007 2026-04-30
541 least weasel (hap1.1 2025 genbank)[IGV] Mustela nivalis GCA_964662115.1_mMusNiv2.hap1.1 SAMEA113398841 PRJEB83720 2025-01-03
542 least weasel (hap1.1 2025 refseq)[IGV] Mustela nivalis GCF_964662115.1_mMusNiv2.hap1.1 SAMEA113398841 PRJEB83720 2024-12-23
543 least weasel (hap2 2026)[IGV] Mustela nivalis vulgaris GCA_057128425.1_mMusNiv1.hap2 SAMN56641588 PRJNA1443006 2026-04-30
544 least weasel (hap2.1 2025)[IGV] Mustela nivalis GCA_964662095.1_mMusNiv2.hap2.1 SAMEA113398841 PRJEB83719 2025-01-03
545 leopard (Hobbes primary hap 2022)[IGV] Panthera pardus GCF_024362965.1_ASM2436296v1 SAMN23235441 PRJNA847351 2022-07-21
546 leopard (Maewha 2016 refseq)[IGV] Panthera pardus GCF_001857705.1_PanPar1.0 SAMN04347630 PRJNA306701 2016-11-16
547 leopard cat[IGV] Prionailurus bengalensis GCF_016509475.1_Fcat_Pben_1.1_paternal_pri SAMN16486448 PRJNA682572 2021-01-06
548 Leschenault's rousette (2020)[IGV] Rousettus leschenaultii GCA_015472975.1_rouLes_1.0 SAMD00237936 PRJDB10312 2020-10-30
549 lesser Egyptian jerboa (2021)[IGV] Jaculus jaculus GCF_020740685.1_mJacJac1.mat.Y.cur SAMN20391724 PRJNA773797 2021-11-04
550 lesser Egyptian jerboa (alternate hap 2021)[IGV] Jaculus jaculus GCA_020740715.1_mJacJac1.pat.decon SAMN20391724 PRJNA773798 2021-11-03
551 lesser Egyptian jerboa (JJ0015 2012 refseq)[IGV] Jaculus jaculus GCF_000280705.1_JacJac1.0 SAMN00728442 PRJNA72445 2012-07-30
552 lesser Egyptian jerboa (primary hap 2021)[IGV] Jaculus jaculus GCA_020740685.1_mJacJac1.mat.Y.cur SAMN20391724 PRJNA773797 2021-11-04
553 lesser false vampire bat (Vietnam 20211001_DDb alternate hap 2024)[IGV] Megaderma spasma GCA_043880535.1_ASM4388053v1 SAMN33550865 PRJNA940046 2024-10-25
554 lesser false vampire bat (Vietnam 20211001_DDb primary hap 2024)[IGV] Megaderma spasma GCA_043880595.1_ASM4388059v1 SAMN33550865 PRJNA940047 2024-10-28
555 lesser horseshoe bat (hap1 2024)[IGV] Rhinolophus hipposideros GCA_964194185.1_mRhiHip2.hap1.1 SAMEA113980802 PRJEB76910 2024-06-28
556 lesser horseshoe bat (hap2 2024)[IGV] Rhinolophus hipposideros GCA_964194215.1_mRhiHip2.hap2.1 SAMEA113980802 PRJEB76909 2024-06-27
557 lesser horseshoe bat (hap2.2 2025)[IGV] Rhinolophus hipposideros GCA_964194215.2_mRhiHip2.hap2.2 SAMEA113980802 PRJEB76909 2025-04-12
558 lesser horseshoe bat (mRhiHip2.hap1.1 2024)[IGV] Rhinolophus hipposideros GCF_964194185.1_mRhiHip2.hap1.1 SAMEA113980802 PRJEB76910 2024-06-28
559 lesser noctule (v2 hap1 2025)[IGV] Nyctalus leisleri GCA_964264875.2_mNycLei1.hap1.2 SAMEA114250308 PRJEB80299 2025-04-03
560 lesser noctule (v2 hap2 2025)[IGV] Nyctalus leisleri GCA_964264895.2_mNycLei1.hap2.2 SAMEA114250308 PRJEB80300 2025-04-02
561 lesser panda (RP43 2017)[IGV] Ailurus styani GCA_002007465.1_ASM200746v1 SAMN04169031 PRJNA298932 2017-02-28
562 lesser sac-winged bat (alternate hap 2024)[IGV] Saccopteryx leptura GCA_036851165.1_mSacLep1_altContigs_phased SAMN37390139 PRJNA1017169 2024-02-23
563 lesser sac-winged bat (primary hap 2024 refseq)[IGV] Saccopteryx leptura GCF_036850995.1_mSacLep1_pri_phased_curated SAMN37390139 PRJNA1017170 2024-02-26
564 lion[IGV] Panthera leo GCF_018350215.1_P.leo_Ple1_pat1.1 SAMN17054329 PRJNA684340 2021-05-13
565 little brown bat[IGV] Myotis lucifugus GCF_000147115.1_Myoluc2.0 SAMN02953645 PRJNA16951 2010-09-14
566 little pocket mouse (longimembris alternate hap 2022)[IGV] Perognathus longimembris GCA_024363435.1_mPerLon1.0.a SAMN29044251 PRJNA855967 2022-07-21
567 little pocket mouse (longimembris primary hap 2022)[IGV] Perognathus longimembris GCA_024363575.1_mPerLon1.0.p SAMN29044251 PRJNA855968 2022-07-21
568 little tube-nosed bat[IGV] Murina aurata feae GCA_004026665.1_MurFea_v1_BIUU SAMN07678148 PRJNA399367 2019-01-16
569 little yellow-shouldered Mesoamerican bat (hap1 2026)[IGV] Sturnira parvidens GCA_054855685.1_mStuPar1.hap1 SAMN51798726 PRJNA1333575 2026-01-30
570 little yellow-shouldered Mesoamerican bat (hap2 2026)[IGV] Sturnira parvidens GCA_054855695.1_mStuPar1.hap2 SAMN51798726 PRJNA1333574 2026-01-30
571 long-finned pilot whale (alternate hap 2024)[IGV] Globicephala melas GCA_963455345.2_mGloMel1.2_alternate_haplotype SAMEA111380538 PRJEB65997 2024-09-08
572 long-finned pilot whale (v2 primary hap 2024 refseq)[IGV] Globicephala melas GCF_963455315.2_mGloMel1.2 SAMEA111380538 PRJEB65996 2024-09-07
573 long-finned pilot whale (X-22926-18 2019)[IGV] Globicephala melas GCF_006547405.1_ASM654740v1 SAMN11083132 PRJNA525909 2019-07-01
574 long-footed potoroo (2021)[IGV] Potorous longipes GCA_904812075.1_ERS5079564_MarsupialExonCaptKit SAMEA7321028 PRJEB39788 2021-09-24
575 long-tailed chinchilla[IGV] Chinchilla lanigera GCF_000276665.1_ChiLan1.0 SAMN00632093 PRJNA68239 2012-08-28
576 long-tongued fruit bat (US102 2019 Broad)[IGV] Macroglossus sobrinus GCA_004027375.1_MacSob_v1_BIUU SAMN07678028 PRJNA399443 2019-01-16
577 Lowland paca[IGV] Cuniculus paca GCA_004365215.1_CunPac_v1_BIUU SAMN07678075 PRJNA399385 2019-03-22
578 Madagascan rousette (hap1 2026)[IGV] Rousettus madagascariensis GCA_059802055.1_mRouMad1.hap1 SAMN61222921 PRJNA1484196 2026-08-04
579 Madagascan rousette (hap2 2026)[IGV] Rousettus madagascariensis GCA_059802175.1_mRouMad1.hap2 SAMN61222921 PRJNA1484195 2026-08-04
580 Malagasy straw-colored fruit bat (hap1 2026)[IGV] Eidolon dupreanum GCA_059749095.1_mEidDup1.hap1 SAMN61283380 PRJNA1489275 2026-08-03
581 Malagasy straw-colored fruit bat (hap2 2026)[IGV] Eidolon dupreanum GCA_059749105.1_mEidDup1.hap2 SAMN61283380 PRJNA1489277 2026-08-03
582 Malayan pangolin (MJ-LG 2024)[IGV] Manis javanica GCF_040802235.1_MJ_LKY SAMN41491306 PRJNA1114675 2024-07-22
583 Malayan pangolin (MP_PG03-UM 2016 refseq)[IGV] Manis javanica GCF_001685135.1_ManJav1.0 SAMN02935387 PRJNA256023 2016-07-14
584 Malayan pangolin YNU ManJav 2.0[IGV] Manis javanica GCF_014570535.1_YNU_ManJav_2.0 SAMN11464811 PRJNA529512 2020-09-15
585 marsupial mole (Waite Creek area ABTC07570 2025)[IGV] Notoryctes typhlops GCA_048126345.1_UniMelb_NotTyph_v1.0 SAMN45131536 PRJNA1193092 2025-02-26
586 Masai giraffe (alternate hap 2026)[IGV] Giraffa tippelskirchi GCA_054371575.1_T2T-mGirTip1v1.2.alt SAMN51204129 PRJNA1327391 2026-01-06
587 Masai giraffe (MA1 2016 Penn St)[IGV] Giraffa tippelskirchi GCA_001651235.1_ASM165123v1 SAMN04526126 PRJNA313910 2016-05-20
588 Masai giraffe (primary hap 2026 genbank)[IGV] Giraffa tippelskirchi GCA_054371585.1_T2T-mGirTip1v1.2.pri SAMN51204129 PRJNA1327387 2026-01-06
589 Masai giraffe (primary hap 2026 refseq)[IGV] Giraffa tippelskirchi GCF_054371585.1_T2T-mGirTip1v1.2.pri SAMN51204129 PRJNA1327387 2026-01-06
590 meadow jumping mouse[IGV] Zapus hudsonius GCA_004024765.1_ZapHud_v1_BIUU SAMN07678139 PRJNA399434 2019-01-15
591 meadow vole (hap1 2024 genbank)[IGV] Microtus pennsylvanicus GCA_037038515.1_mMicPen1.hap1 SAMN39894136 PRJNA1074849 2024-03-06
592 meadow vole (hap1 2024 refseq)[IGV] Microtus pennsylvanicus GCF_037038515.1_mMicPen1.hap1 SAMN39894136 PRJNA1074849 2024-03-06
593 meadow vole (hap2 2024)[IGV] Microtus pennsylvanicus GCA_037039175.1_mMicPen1.hap2 SAMN39894136 PRJNA1074850 2024-03-06
594 meerkat (VVHF042 2019 DNA Zoo refseq)[IGV] Suricata suricatta GCF_006229205.1_meerkat_22Aug2017_6uvM2_HiC SAMN11840572 PRJNA540846 2019-07-03
595 melon-headed whale (hap1 2025)[IGV] Peponocephala electra GCA_051427945.1_mPepEle1.hap1 SAMN49764666 PRJNA1285447 2025-07-21
596 melon-headed whale (hap2 2025)[IGV] Peponocephala electra GCA_051427955.1_mPepEle1.hap2 SAMN49764666 PRJNA1285448 2025-07-21
597 Merriam's kangaroo rat (MVZ:Mamm:240054 alternate hap 2022)[IGV] Dipodomys merriami GCA_024711525.1_mDipMer1.0.a SAMN29046532 PRJNA851459 2022-08-18
598 Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022 genbank)[IGV] Dipodomys merriami GCA_024711535.1_mDipMer1.0.p SAMN29046532 PRJNA851460 2022-08-18
599 Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022 refseq)[IGV] Dipodomys merriami GCF_024711535.1_mDipMer1.0.p SAMN29046532 PRJNA851460 2022-08-18
600 Merriam's long-tongued bat (hap1 2024)[IGV] Glossophaga mutica GCA_039655065.1_mGloMut1.hap1 SAMN40946060 PRJNA1099662 2024-05-17
601 Merriam's long-tongued bat (hap2 2024)[IGV] Glossophaga mutica GCA_039656995.1_mGloMut1.hap2 SAMN40946060 PRJNA1099663 2024-05-17
602 mesic four-striped grass rat (FMNH 192475 2021)[IGV] Rhabdomys dilectus GCA_019844195.1_ASM1984419v1 SAMN16477140 PRJNA669840 2021-09-01
603 Mesoamerican common mustached bat (primary hap 2026)[IGV] Pteronotus mesoamericanus GCA_056363955.1_mPteMes1.pri SAMN54685477 PRJNA1403640 2026-03-27
604 Mexican gray wolf (hap1 2025 refseq)[IGV] Canis lupus baileyi GCF_048164855.1_mCanLup2.hap1 SAMN46796784 PRJNA1223036 2025-02-27
605 Mexican gray wolf (hap2 2025)[IGV] Canis lupus baileyi GCA_048164845.1_mCanLup2.hap2 SAMN46796784 PRJNA1223037 2025-02-27
606 minke whale (2013 refseq)[IGV] Balaenoptera acutorostrata scammoni GCF_000493695.1_BalAcu1.0 SAMN02192642 PRJNA72723 2013-10-31
607 minke whale (alternate hap 2023)[IGV] Balaenoptera acutorostrata GCA_950005055.1_mBalAcu1.1_alternate_haplotype SAMEA111380540 PRJEB61580 2023-04-29
608 minke whale (primary hap 2023 refseq)[IGV] Balaenoptera acutorostrata GCF_949987535.1_mBalAcu1.1 SAMEA111380540 PRJEB61579 2023-05-01
609 Mongolian gerbil (243 2017 Lucigen Corp.)[IGV] Meriones unguiculatus GCF_002204375.1_MunDraft-v1.0 SAMN06897401 PRJNA385619 2017-06-21
610 Mongolian gerbil (EAM2014 2019 BGI)[IGV] Meriones unguiculatus GCA_008131255.1_ASM813125v1 SAMN11651137 PRJNA543000 2019-08-30
611 Mongolian gerbil (TT.TT164.6M 2023)[IGV] Meriones unguiculatus GCF_030254825.1_Bangor_MerUng_6.1 SAMN26787832 PRJNA397533 2023-06-12
612 monito del monte (mDroGli1 alternate hap 2021)[IGV] Dromiciops gliroides GCA_019395325.1_mDroGli1.alt SAMN18857598 PRJNA728142 2021-07-29
613 monito del monte (primary hap 2021 refseq)[IGV] Dromiciops gliroides GCF_019393635.1_mDroGli1.pri SAMN18857598 PRJNA728141 2021-08-03
614 Montane guinea pig[IGV] Cavia tschudii GCA_004027695.1_CavTsc_v1_BIUU SAMN07678017 PRJNA399343 2019-01-16
615 moose/elk (2024)[IGV] Alces alces GCA_964270355.1_Elg.assembly.v.1.0 SAMEA116099468 PRJEB80548 2024-09-28
616 moose/elk (AALL_1980 2023)[IGV] Alces alces GCA_015832495.2_NRM_Aalces_2_0.fsa SAMN16402102 PRJNA668262 2023-05-22
617 moose/elk (MIG12-28694850 2019)[IGV] Alces alces GCA_007570765.1_GSC_moose_1.0 SAMN11091360 PRJNA526240 2019-07-12
618 Mount Data shrew rat (FMNH 198792 2021)[IGV] Rhynchomys soricoides GCA_019843965.1_ASM1984396v1 SAMN16477141 PRJNA669840 2021-09-01
619 mountain beaver[IGV] Aplodontia rufa GCA_004027875.1_AplRuf_v1_BIUU SAMN07678037 PRJNA399342 2019-01-16
620 mountain bongo (Barney_WCC 2024)[IGV] Tragelaphus eurycerus isaaci GCA_040438115.1_ASM4043811v1 SAMN40191560 PRJNA1081906 2024-07-01
621 muskrat[IGV] Ondatra zibethicus GCA_004026605.1_OndZib_v1_BIUU SAMN07678059 PRJNA399451 2019-01-16
622 naked mole-rat (2022)[IGV] Heterocephalus glaber GCA_944319725.1_Naked_mole-rat_paternal SAMEA14374022 PRJEB52763 2022-07-01
623 naked mole-rat (maternal 2024)[IGV] Heterocephalus glaber GCA_964261345.1_mHetGlaV3 SAMEA14374018 PRJEB71899 2024-09-07
624 naked mole-rat (MEF-2018 2020)[IGV] Heterocephalus glaber GCA_014060925.1_Heter_glaber.v1.7_hic_pac SAMN10409247 PRJNA505051 2020-08-04
625 naked mole-rat (NMR 29 2012 refseq)[IGV] Heterocephalus glaber GCF_000247695.1_HetGla_female_1.0 SAMN00714537 PRJNA72441 2012-02-17
626 naked mole-rat (pHap 2024)[IGV] Heterocephalus glaber GCA_964261355.1_pHetGlaV3 SAMEA14374022 PRJEB71899 2024-09-07
627 narwhal[IGV] Monodon monoceros GCA_005190385.4_mMonMon2.pri SAMN10872456 PRJNA520934 2026-01-23
628 narwhal (Baffin Bay 2019)[IGV] Monodon monoceros GCF_005190385.1_NGI_Narwhal_1 SAMN10872456 PRJNA520934 2019-05-06
629 narwhal (Baffin Bay Population NGI 2022)[IGV] Monodon monoceros GCA_005190385.3_NGI_Narwhal_2 SAMN10872456 PRJNA520934 2022-11-09
630 Natal long-fingered bat (2016)[IGV] Miniopterus natalensis GCF_001595765.1_Mnat.v1 SAMN03652541 PRJNA283550 2016-03-22
631 Natal long-fingered bat (hap1 2026 genbank)[IGV] Miniopterus natalensis GCA_054644295.1_mMinNat1.hap1 SAMN53799156 PRJNA1377719 2026-01-22
632 Natal long-fingered bat (hap1 2026 refseq)[IGV] Miniopterus natalensis GCF_054644295.1_mMinNat1.hap1 SAMN53799156 PRJNA1377719 2026-01-22
633 Natal long-fingered bat (hap2 2026)[IGV] Miniopterus natalensis GCA_054644305.1_mMinNat1.hap2 SAMN53799156 PRJNA1377720 2026-01-22
634 Nathusius's pipistrelle (hap1.1 2025)[IGV] Pipistrellus nathusii GCA_964656225.1_mPipNat1.hap1.1 SAMEA115534661 PRJEB83377 2025-01-02
635 Nathusius's pipistrelle (hap1.2 2025)[IGV] Pipistrellus nathusii GCA_964656225.2_mPipNat1.hap1.2 SAMEA115534661 PRJEB83377 2025-05-07
636 Nathusius's pipistrelle (hap2.1 2025)[IGV] Pipistrellus nathusii GCA_964656075.1_mPipNat1.hap2.1 SAMEA115534661 PRJEB83378 2025-01-03
637 Nathusius's pipistrelle (hap2.2 2025)[IGV] Pipistrellus nathusii GCA_964656075.2_mPipNat1.hap2.2 SAMEA115534661 PRJEB83378 2025-05-08
638 Nathusius's pipistrelle (primary hap 2024)[IGV] Pipistrellus nathusii GCA_963693515.1_mPipNat.pri SAMEA114653171 PRJEB70415 2024-02-07
639 Natterer's bat[IGV] Myotis nattereri GCF_964212035.1_mMyoNat1.hap1.2 SAMEA114614248 PRJEB78592 2025-03-28
640 Natterer's bat (hap1.2 2025)[IGV] Myotis nattereri GCA_964212035.2_mMyoNat1.hap1.2 SAMEA114614248 PRJEB78592 2025-03-28
641 Natterer's bat (hap2.2 2025)[IGV] Myotis nattereri GCA_964212025.2_mMyoNat1.hap2.2 SAMEA114614248 PRJEB78591 2025-03-28
642 neotropical fruit bat[IGV] Sturnira hondurensis GCF_014824575.2_WHU_Shon_v2.1 SAMN12282880 PRJNA554734 2020-09-30
643 New Mexican meadow jumping mouse (hap1 2026)[IGV] Zapus hudsonius luteus GCA_057945945.1_mZapHud2.hap1 SAMN57447961 PRJNA1457139 2026-06-04
644 New Mexican meadow jumping mouse (hap2 2026)[IGV] Zapus hudsonius luteus GCA_057945955.1_mZapHud2.hap2 SAMN57447961 PRJNA1457138 2026-06-04
645 Nilgiri tahr[IGV] Nilgiritragus hylocrius GCA_004026825.1_HemHyl_v1_BIUU SAMN07678087 PRJNA399397 2019-01-16
646 nine-banded armadillo (hap2 2023)[IGV] Dasypus novemcinctus GCA_030445035.2_mDasNov1.1.hap2 SAMN32738980 PRJNA923800 2023-07-13
647 nine-banded armadillo (v2 hap1 2023)[IGV] Dasypus novemcinctus GCA_030445055.2_mDasNov1.1.hap1 SAMN32738980 PRJNA923799 2023-07-13
648 nine-banded armadillo (v2 hap2 2023)[IGV] Dasypus novemcinctus GCF_030445035.2_mDasNov1.1.hap2 SAMN32738980 PRJNA923800 2023-07-13
649 nine-banded armadillo (v3.2 3-136 2012 Baylor)[IGV] Dasypus novemcinctus GCF_000208655.3_Dasnov3.2 SAMN02953623 PRJNA12594 2012-01-06
650 North American deer mouse (MVZ:Mamm:240117 alternate hap 2022)[IGV] Peromyscus maniculatus sonoriensis GCA_026167925.1_mPerMan1.0.a SAMN29044276 PRJNA851173 2022-11-14
651 North American deer mouse (v1 MVZ:Mamm:240117 primary hap 2022)[IGV] Peromyscus maniculatus sonoriensis GCA_026229955.1_mPerMan1.0.p SAMN29044276 PRJNA851174 2022-11-14
652 North American deer mouse (v2 MVZ:Mamm:240117 primary hap 2026)[IGV] Peromyscus maniculatus sonoriensis GCA_026229955.2_mPerMan1.1.pri SAMN29044276 PRJNA851174 2026-01-22
653 North American porcupine (mEreDor1 alternate hap 2023)[IGV] Erethizon dorsatum GCA_028500835.1_mEreDor1.alt SAMN32359106 PRJNA915122 2023-02-03
654 North American porcupine (mEreDor1 primary hap 2023)[IGV] Erethizon dorsatum GCA_028451465.1_mEreDor1.pri SAMN32359106 PRJNA915121 2023-02-06
655 North Atlantic bottlenose whale[IGV] Hyperoodon ampullatus GCF_949752795.1_mHypAmp2.1 SAMEA10839125 PRJEB60895 2023-03-31
656 North Atlantic right whale (hap2 + XY 2023 refseq)[IGV] Eubalaena glacialis GCF_028564815.1_mEubGla1.1.hap2._XY SAMN32746534 PRJNA924128 2023-02-09
657 North Atlantic right whale (hap2._XY 2023)[IGV] Eubalaena glacialis GCA_028564815.2_mEubGla1.1.hap2._XY SAMN32746534 PRJNA924128 2023-02-09
658 North Atlantic right whale (v1 hap1 2023)[IGV] Eubalaena glacialis GCA_028571275.1_mEubGla1.hap1 SAMN32746534 PRJNA924127 2023-02-09
659 North Atlantic right whale (v2 hap1 2023)[IGV] Eubalaena glacialis GCA_028571275.2_mEubGla1.1.hap1 SAMN32746534 PRJNA924127 2023-02-09
660 North Pacific right whale[IGV] Eubalaena japonica GCA_004363455.1_EubJap_v1_BIUU SAMN07678124 PRJNA399464 2019-03-22
661 North Sulawesi babirusa (hap1 2026)[IGV] Babyrousa celebensis GCA_057927545.1_mBabCel1.hap1 SAMN56641586 PRJNA1441110 2026-06-03
662 North Sulawesi babirusa (hap2 2026)[IGV] Babyrousa celebensis GCA_057877285.1_mBabCel1.hap2 SAMN56641586 PRJNA1441109 2026-06-03
663 northern American river otter[IGV] Lontra canadensis GCF_010015895.1_GSC_riverotter_1.0 SAMN13049247 PRJNA578111 2020-01-27
664 northern bat (alternate hap 2023)[IGV] Cnephaeus nilssonii GCA_951640545.1_mEptNil1.1_alternate_haplotype SAMEA14098186 PRJEB62201 2023-05-18
665 northern bat (primary hap 2023 genbank)[IGV] Cnephaeus nilssonii GCA_951640355.1_mEptNil1.1 SAMEA14098186 PRJEB62200 2023-05-18
666 northern bat (primary hap 2023 refseq)[IGV] Cnephaeus nilssonii GCF_951640355.1_mEptNil1.1 SAMEA14098186 PRJEB62200 2023-05-18
667 northern black mastiff bat (mMolNig1 2022)[IGV] Molossus nigricans GCA_026936385.1_BBF_mMolNig1_v1 SAMN31835895 PRJNA904257 2022-12-16
668 northern black mastiff bat (mMolNig1hap1 2024)[IGV] Molossus nigricans GCA_039880945.1_mMolNig1.hap1 SAMN40002246 PRJNA1093103 2024-05-29
669 northern black mastiff bat (mMolNig1hap2 2024)[IGV] Molossus nigricans GCA_039880925.1_mMolNig1.hap2 SAMN40002246 PRJNA1093104 2024-05-29
670 northern bottlenose whale (alternate hap 2023)[IGV] Hyperoodon ampullatus GCA_949752845.1_mHypAmp2.1_alternate_haplotype SAMEA10839125 PRJEB60894 2023-04-09
671 northern bottlenose whale (primary hap 2023)[IGV] Hyperoodon ampullatus GCA_949752795.1_mHypAmp2.1 SAMEA10839125 PRJEB60895 2023-04-08
672 northern elephant seal (BS05 2019 Broad)[IGV] Mirounga angustirostris GCA_004023865.1_MirAng_v1_BIUU SAMN07678016 PRJNA399341 2019-01-15
673 northern elephant seal (CCGP_5_RB_7025 hap1 2023 genbank)[IGV] Mirounga angustirostris GCA_029215605.1_mMirAng1.0.hap1 SAMN33386026 PRJNA937321 2023-03-14
674 northern elephant seal (CCGP_5_RB_7025 hap1 2023 refseq)[IGV] Mirounga angustirostris GCF_029215605.1_mMirAng1.0.hap1 SAMN33386026 PRJNA937321 2023-03-14
675 northern elephant seal (CCGP_5_RB_7025 hap2 2023)[IGV] Mirounga angustirostris GCA_029215635.1_mMirAng1.0.hap2 SAMN33386026 PRJNA937320 2023-03-14
676 northern elephant seal (v3 JK_09032017 2022)[IGV] Mirounga angustirostris GCF_021288785.2_ASM2128878v3 SAMN13072016 PRJNA512907 2022-12-21
677 northern fur seal[IGV] Callorhinus ursinus GCF_003265705.1_ASM326570v1 SAMN09379881 PRJNA475116 2018-06-26
678 northern fur seal (GAN/ISIS: 27379988/994484 2025)[IGV] Callorhinus ursinus GCF_003265705.2_GSC_fseal_2.0 SAMN09379881 PRJNA475116 2025-02-03
679 northern gundi (hap1 2025)[IGV] Ctenodactylus gundi GCA_048771875.1_mCteGun2.hap1 SAMN47326412 PRJNA1235316 2025-03-21
680 northern gundi (hap2 2025)[IGV] Ctenodactylus gundi GCA_048771865.1_mCteGun2.hap2 SAMN47326412 PRJNA1235317 2025-03-21
681 northern gundi (US049 2019)[IGV] Ctenodactylus gundi GCA_004027205.1_CteGun_v1_BIUU SAMN07678018 PRJNA399344 2019-01-16
682 Northern hairy-legged myotis (hap1 2026)[IGV] Myotis pilosatibialis GCA_057888715.1_mMyoPil1.hap1 SAMN55344023 PRJNA1423326 2026-06-03
683 Northern hairy-legged myotis (hap2 2026)[IGV] Myotis pilosatibialis GCA_057888765.1_mMyoPil1.hap2 SAMN55344023 PRJNA1423327 2026-06-03
684 northern mole vole[IGV] Ellobius talpinus GCA_001685095.1_ETalpinus_0.1 SAMN04317029 PRJNA305123 2016-07-14
685 northern three-toed jerboa (halli NM19106 2024)[IGV] Dipus sagitta GCA_036346955.1_IOZCAS_Dsag_1.1 SAMN16987129 PRJNA682294 2024-02-05
686 northern white rhinoceros[IGV] Ceratotherium simum cottoni GCA_004027795.1_CerCot_v1_BIUU SAMN07678069 PRJNA399457 2019-01-16
687 northern woolly horseshoe bat (20210929_DDc alternate hap 2024)[IGV] Rhinolophus perniger lanosus GCA_043748905.1_ASM4374890v1 SAMN33438666 PRJNA937180 2024-10-24
688 northern woolly horseshoe bat (20210929_DDc primary hap 2024)[IGV] Rhinolophus perniger lanosus GCA_043748575.1_ASM4374857v1 SAMN33438666 PRJNA937181 2024-10-24
689 Norway rat (BN/NHsdMcwi 2024 genbank)[IGV] Rattus norvegicus GCA_036323735.1_GRCr8 SAMN38730095 PRJNA1027884 2024-01-31
690 Norway rat (BN/NHsdMcwi 2024 refseq)[IGV] Rattus norvegicus GCF_036323735.1_GRCr8 SAMN38730095 PRJNA1027884 2024-01-31
691 Norway rat (F344/Stm 2024)[IGV] Rattus norvegicus GCA_041222355.1_F344_StmMcwi SAMN40217939 PRJNA1082763 2024-08-12
692 Norway rat (LE/Stm RGD_629485 2026)[IGV] Rattus norvegicus GCA_058775275.1_LE_Stm SAMN59334990 PRJNA1463283 2026-07-02
693 Norway rat (v1 SHRSP/BppUtx 2022)[IGV] Rattus norvegicus GCA_021556685.1_UTH_Rnor_SHRSP_BbbUtx_1.0 SAMN24538170 PRJNA793432 2022-01-24
694 Norway rat (v2 T2T SHRSP/BbbUtx 2026)[IGV] Rattus norvegicus GCA_021556685.2_SHRSP_T2T SAMN24538170 PRJNA793432 2026-05-20
695 Norway rat BN7 haplotype[IGV] Rattus norvegicus GCA_015244455.1_mRatBN7.1_alternate_haplotype SAMN16261960 PRJNA663241 2020-11-04
696 Norway rat BN7.2[IGV] Rattus norvegicus GCF_015227675.2_mRatBN7.2 SAMN16261960 PRJNA662791 2020-11-10
697 Norway rat celera[IGV] Rattus norvegicus GCF_000002265.2_Rn_Celera SAMN03000701 PRJNA13999 2006-12-06
698 Norway rat Dahl SR JrHsd (RGD_1582184 2024)[IGV] Rattus norvegicus GCA_045688005.1_Dahl_SR_JrHsd SAMN44524385 PRJNA1180592 2024-12-04
699 Norway rat Lyon Hypertensive(RGD_10755352 2024)[IGV] Rattus norvegicus GCA_045687965.1_Lyon_Hypertensive SAMN44771830 PRJNA1186738 2024-12-04
700 Norway rat Lyon Normot (RGD_10755354 2024)[IGV] Rattus norvegicus GCA_045687995.1_Lyon_Normot_Rat_Genome SAMN44819359 PRJNA1188056 2024-12-04
701 Norway rat Rnor6.0[IGV] Rattus norvegicus GCF_000001895.5_Rnor_6.0 SAMN02808228 PRJNA10629 2014-07-01
702 Norway rat SHR/Utx RGD_8142385 2022[IGV] Rattus norvegicus GCA_023515785.1_UTH_Rnor_SHR_Utx SAMN27519281 PRJNA825507 2022-05-25
703 Norway rat WKY/Bbb 2022[IGV] Rattus norvegicus GCA_023515805.1_UTH_Rnor_WKY_Bbb_1.0 SAMN27518707 PRJNA825508 2022-05-25
704 Nubian ibex (hap1 2026)[IGV] Capra nubiana GCA_054855995.1_mCapNub1.hap1 SAMN54684662 PRJNA1403631 2026-01-30
705 Nubian ibex (hap2 2026)[IGV] Capra nubiana GCA_054856215.1_mCapNub1.hap2 SAMN54684662 PRJNA1403632 2026-01-30
706 nutria[IGV] Myocastor coypus GCA_004027025.1_MyoCoy_v1_BIUU SAMN07678020 PRJNA399346 2019-01-16
707 okapi[IGV] Okapia johnstoni GCA_001660835.1_ASM166083v1 SAMN04526128 PRJNA313910 2016-06-08
708 Okinawa island spiny rat (P-3 2024)[IGV] Tokudaia muenninki GCA_047150545.1_Tmue_2.0 SAMD00634148 PRJDB16323 2024-11-30
709 Okinawa island spiny rat (P-3 primary hap 2023)[IGV] Tokudaia muenninki GCA_036184385.1_Tmue1 SAMD00634148 PRJDB16371 2023-09-08
710 Ord's kangaroo rat[IGV] Dipodomys ordii GCF_000151885.1_Dord_2.0 SAMN02900551 PRJNA20385 2014-12-12
711 pacarana[IGV] Dinomys branickii GCA_004027595.1_DinBra_v1_BIUU SAMN07678079 PRJNA399389 2019-01-16
712 Pacific pocket mouse (BS65 2019 Broad)[IGV] Perognathus longimembris pacificus GCA_004363475.1_PerLonPac_v1_BIUU SAMN07678105 PRJNA399459 2019-03-22
713 Pacific pocket mouse (PPM17 2022 San Diego Zoo)[IGV] Perognathus longimembris pacificus GCF_023159225.1_ASM2315922v1 SAMN26876106 PRJNA818714 2022-04-27
714 Pacific walrus[IGV] Odobenus rosmarus divergens GCF_000321225.1_Oros_1.0 SAMN01180787 PRJNA167474 2013-01-16
715 Pacific white-sided dolphin[IGV] Sagmatias obliquidens GCF_003676395.1_ASM367639v1 SAMN09386610 PRJNA475306 2018-10-23
716 pale spear-nosed bat (alternate hap MPI-MPIP 2019)[IGV] Phyllostomus discolor GCA_004115245.1_mPhyDis1_v1.h SAMN09948786 PRJNA489142 2019-01-28
717 pale spear-nosed bat (MPI-MPIP mPhyDis1 primary hap 2020)[IGV] Phyllostomus discolor GCA_004126475.3_mPhyDis1.pri.v3 SAMN09948786 PRJNA489141 2020-05-12
718 pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020)[IGV] Phyllostomus discolor GCA_004115245.2_mPhyDis1.alti.v3 SAMN09948786 PRJNA489142 2020-05-11
719 pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020)[IGV] Phyllostomus discolor GCF_004126475.2_mPhyDis1.pri.v3 SAMN09948786 PRJNA489141 2020-05-12
720 Pallas's mastiff bat (2020 refseq)[IGV] Molossus molossus GCF_014108415.1_mMolMol1.p SAMN14734448 PRJNA628574 2020-08-07
721 Pallas's mastiff bat (2026 genbank)[IGV] Molossus molossus GCA_014108415.2_mMolMol1.pri SAMN14734448 PRJNA628574 2026-01-22
722 pallid bat[IGV] Antrozous pallidus GCA_027563665.2_DD_ASM_mAP_20210503 SAMN30225125 PRJNA868156 2026-05-11
723 pallid bat (TK200870 alternate hap 2023)[IGV] Antrozous pallidus GCA_027595915.1_DD_ASM_mAP_20210503_alt SAMN30225125 PRJNA868181 2023-01-03
724 pallid bat (TK200870 primary hap 2023)[IGV] Antrozous pallidus GCA_027563665.1_DD_ASM_mAP_20210503 SAMN30225125 PRJNA868156 2023-01-09
725 Parnell's mustached bat (2013)[IGV] Pteronotus parnellii GCA_000465405.1_ASM46540v1 SAMN02212709 PRJNA209408 2013-09-13
726 Parnell's mustached bat (Mesoamerican 2021)[IGV] Pteronotus mesoamericanus GCF_021234165.1_CSHL_Meso_final SAMN21509357 PRJNA751559 2021-12-20
727 particolored bat (hap1.2 2025)[IGV] Vespertilio murinus GCA_963924515.2_mVesMur1.hap1.2 SAMEA112247422 PRJEB72086 2025-04-09
728 particolored bat (hap2.2 2025)[IGV] Vespertilio murinus GCA_963924695.2_mVesMur1.hap2.2 SAMEA112247422 PRJEB72087 2025-04-09
729 particolored bat (primary hap 2024)[IGV] Vespertilio murinus GCA_963924515.1_mVesMur1.1 SAMEA112247422 PRJEB72086 2024-01-29
730 Patagonian cavy[IGV] Dolichotis patagonum GCA_004027295.1_DolPat_v1_BIUU SAMN07678081 PRJNA399391 2019-01-16
731 Pere David's deer[IGV] Elaphurus davidianus GCA_002443075.1_Milu1.0 SAMN03020601 PRJNA256236 2017-10-04
732 Philippine flying lemur (mCynVol1 alternate hap 2022)[IGV] Cynocephalus volans GCA_027409165.1_mCynVol1.alt SAMN32206947 PRJNA911845 2022-12-27
733 Philippine flying lemur (primary hap 2022 genbank)[IGV] Cynocephalus volans GCA_027409185.1_mCynVol1.pri SAMN32206947 PRJNA911844 2022-12-28
734 Philippine flying lemur (primary hap 2022 refseq)[IGV] Cynocephalus volans GCF_027409185.1_mCynVol1.pri SAMN32206947 PRJNA911844 2022-12-28
735 pig (Bamei 2023)[IGV] Sus scrofa GCA_030704935.1_ASM3070493v1 SAMN29182547 PRJNA850464 2023-08-10
736 pig (Bamei 2025)[IGV] Sus scrofa GCA_030704935.2_ASM3070493v2 SAMN29182547 PRJNA850464 2025-11-21
737 pig (Duroc 2017)[IGV] Sus scrofa GCF_000003025.6_Sscrofa11.1 SAMN02953785 PRJNA13421 2017-02-07
738 pig (Norwegian landrace 2024)[IGV] Sus scrofa GCA_963921485.1_norwegian_landrace SAMEA115082662 PRJEB71670 2024-01-11
739 pig (SSC_HxYL_T2T_F1_AM1 2026)[IGV] Sus scrofa GCF_054392235.1_Sscrofa_HxYL_maternal_Yorkshire_Landrace_v2.0 SAMN51643035 PRJNA1331744 2026-01-28
740 pig (USMARCv1 2017)[IGV] Sus scrofa GCA_002844635.1_USMARCv1.0 SAMN07325927 PRJNA392765 2017-12-20
741 pig (Wuzhishan WZS1 2025)[IGV] Sus scrofa GCA_048338725.1_T2T_pig1.0 SAMN42780387 PRJNA1139427 2025-03-05
742 plains viscacha rat (AO245 2017)[IGV] Tympanoctomys barrerae GCA_002564285.1_Tym_barrerae_AO245_v1 SAMN06642005 PRJNA380259 2017-10-17
743 plains zebra (Etosha38 2022 UCLA)[IGV] Equus quagga GCF_021613505.1_UCLA_HA_Equagga_1.0 SAMN16526506 PRJNA785630 2022-01-31
744 platypus (alternate hap Pmale09 2020)[IGV] Ornithorhynchus anatinus GCA_004115175.2_mOrnAna1.alt.v3 SAMN08537700 PRJNA489115 2020-04-06
745 platypus (Pmale09 primary hap 2020)[IGV] Ornithorhynchus anatinus GCA_004115215.4_mOrnAna1.pri.v4 SAMN08537700 PRJNA489114 2020-11-06
746 platypus (Pmale09 v4 2020)[IGV] Ornithorhynchus anatinus GCF_004115215.2_mOrnAna1.pri.v4 SAMN08537700 PRJNA489114 2020-11-06
747 polar bear (Baiyulong BGI 2014 refseq)[IGV] Ursus maritimus GCF_000687225.1_UrsMar_1.0 SAMN02729226 PRJNA210951 2014-05-09
748 polar bear (UCSC 2021)[IGV] Ursus maritimus GCF_017311325.1_ASM1731132v1 SAMN10734297 PRJNA669153 2021-03-09
749 prairie deer mouse (Baylor 2013)[IGV] Peromyscus maniculatus bairdii GCF_000500345.1_Pman_1.0 SAMN00848614 PRJNA53563 2013-12-03
750 prairie deer mouse (BWxNUB_F1_BW_parent 2025)[IGV] Peromyscus maniculatus bairdii GCF_049852395.1_HU_Pman_BW_mat_3.1 SAMN49628720 PRJNA1155677 2025-04-22
751 prairie deer mouse (Harvard 2020)[IGV] Peromyscus maniculatus bairdii GCF_003704035.1_HU_Pman_2.1.3 SAMN10150431 PRJNA494228 2020-09-17
752 prairie vole (2012)[IGV] Microtus ochrogaster GCF_000317375.1_MicOch1.0 SAMN00727831 PRJNA72443 2012-12-07
753 prairie vole (hap1 2026)[IGV] Microtus ochrogaster GCA_984569965.1_mMicOch_UCD_v1_hap1 SAMEA122714324 PRJEB108798 2026-07-04
754 Preble's meadow jumping mouse (hap1 2026)[IGV] Zapus hudsonius preblei GCA_057945845.1_mZapHud1.hap1 SAMN57447948 PRJNA1457135 2026-06-04
755 Preble's meadow jumping mouse (hap2 2026)[IGV] Zapus hudsonius preblei GCA_057945655.1_mZapHud1.hap2 SAMN57447948 PRJNA1457134 2026-06-04
756 proboscis bat (hap1 2024)[IGV] Rhynchonycteris naso GCA_037038545.1_mRhyNas2.hap1 SAMN39947078 PRJNA1076651 2024-03-06
757 proboscis bat (hap2 2024)[IGV] Rhynchonycteris naso GCA_037038555.1_mRhyNas2.hap2 SAMN39947078 PRJNA1076652 2024-03-06
758 pronghorn (PH2016 2021)[IGV] Antilocapra americana GCA_021018645.1_ASM2101864v1 SAMN08712244 PRJNA438286 2021-12-01
759 Przewalski's gazelle (PLG-pushi 2019)[IGV] Procapra przewalskii GCA_006410515.1_PLG SAMN08714485 PRJNA438286 2019-06-24
760 Przewalski's horse (Burgud 2014 refseq)[IGV] Equus przewalskii GCF_000696695.1_Burgud SAMN02808398 PRJNA200657 2014-06-05
761 Przewalski's horse (Varuska primary hap 2024)[IGV] Equus przewalskii GCF_037783145.1_EquPr2 SAMN39404770 PRJNA1063310 2024-04-01
762 puma (L17-30 alternate hap 2023 genbank)[IGV] Puma concolor GCA_028749965.1_mPumCon1.0.hap2 SAMN30567381 PRJNA887114 2023-02-06
763 puma (L17-30 alternate hap 2023 refseq)[IGV] Puma concolor GCF_028749965.1_mPumCon1.1.hap2 SAMN30567381 PRJNA887114 2023-08-04
764 puma (L17-30 primary hap 2023)[IGV] Puma concolor GCA_028749985.1_mPumCon1.0.hap1 SAMN30567381 PRJNA887115 2023-02-21
765 puma (SC36_Marlon 2018 refseq)[IGV] Puma concolor GCF_003327715.1_PumCon1.0 SAMN08662999 PRJNA437459 2018-07-19
766 punctate agouti[IGV] Dasyprocta punctata GCA_004363535.1_DasPun_v1_BIUU SAMN07678076 PRJNA399386 2019-03-22
767 Punta de Vaca leaf-eared mouse (GD2095 2023)[IGV] Phyllotis vaccarum GCA_033318265.1_ASM3331826v1 SAMN34041602 PRJNA950396 2023-11-03
768 pygmy sperm whale[IGV] Kogia breviceps GCA_004363705.1_KogBre_v1_BIUU SAMN07678126 PRJNA399466 2019-03-22
769 pygmy sperm whale (haplotype 1 2022 refseq)[IGV] Kogia breviceps GCF_026419965.1_mKogBre1_haplotype_1 SAMN31719513 PRJNA901930 2022-11-27
770 pygmy sperm whale (mKogBre1 haplotype 2 2022)[IGV] Kogia breviceps GCA_026419985.1_mKogBre1_haplotype_2 SAMN31719513 PRJNA901931 2022-11-27
771 Pyrenean desman (IBE-C5619 2021)[IGV] Galemys pyrenaicus GCA_019455555.1_Gpyr_1.0 SAMN18106611 PRJNA705855 2021-08-05
772 rabbit (A946 2020)[IGV] Oryctolagus cuniculus cuniculus GCA_013371645.1_OryCun3.0 SAMN15208106 PRJNA635554 2020-06-24
773 rabbit (alternate hap 2024)[IGV] Oryctolagus cuniculus GCA_964237575.1_mOryCun1.1_alternate_haplotype SAMEA112468037 PRJEB79210 2024-08-29
774 rabbit (New Zealand White DNA-2018 2021 refseq)[IGV] Oryctolagus cuniculus GCF_009806435.1_UM_NZW_1.0 SAMN12179861 PRJNA274594 2021-02-04
775 rabbit (primary hap 2024 refseq)[IGV] Oryctolagus cuniculus GCF_964237555.1_mOryCun1.1 SAMEA112468037 PRJEB79209 2024-08-31
776 rabbit (Thorbecke 2009 Broad refseq)[IGV] Oryctolagus cuniculus GCF_000003625.3_OryCun2.0 SAMN02953624 PRJNA12819 2009-10-20
777 raccoon dog (2021)[IGV] Nyctereutes procyonoides GCF_905146905.1_NYPRO_anot_genome SAMEA7690874 PRJEB41734 2021-02-14
778 Rambouillet sheep (Baylor 2017)[IGV] Ovis aries GCF_002742125.1_Oar_rambouillet_v1.0 SAMEA104496890 PRJNA414087 2017-11-02
779 Rambouillet sheep (U.Idaho 2021)[IGV] Ovis aries GCF_016772045.1_ARS-UI_Ramb_v2.0 SAMN17575729 PRJNA675594 2021-02-03
780 ratel[IGV] Mellivora capensis GCA_004024625.1_MelCap_v1_BIUU SAMN07678094 PRJNA399403 2019-01-15
781 red bat[IGV] Lasiurus borealis GCA_004026805.1_LasBor_v1_BIUU SAMN07678027 PRJNA399352 2019-01-16
782 red deer (alternate hap 2021)[IGV] Cervus elaphus GCA_910593805.1_mCerEla1.1_alternate_haplotype SAMEA7523520 PRJEB45837 2021-07-07
783 red deer (hap1.2 2026)[IGV] Cervus elaphus GCA_910594005.2_mCerEla1.hap1.2 SAMEA7523520 PRJEB45838 2026-02-26
784 red deer (hap2.2 2026)[IGV] Cervus elaphus GCA_910593805.2_mCerEla1.hap2.2 SAMEA7523520 PRJEB45837 2026-02-10
785 red deer (primary hap 2021)[IGV] Cervus elaphus GCF_910594005.1_mCerEla1.1 SAMEA7523520 PRJEB45838 2021-07-07
786 red fox (BD-2025 2025)[IGV] Vulpes vulpes GCF_048418805.1_VulVul3 SAMN46073820 PRJNA1206188 2025-03-05
787 red fox (hap1 2024)[IGV] Vulpes vulpes GCA_964106825.2_mVulVul1.hap1.2 SAMEA113398840 PRJEB75990 2024-06-27
788 red fox (hap2 2024)[IGV] Vulpes vulpes GCA_964106925.2_mVulVul1.hap2.2 SAMEA113398840 PRJEB75989 2024-06-27
789 red fox (tameXaggressive cross 2018)[IGV] Vulpes vulpes GCF_003160815.1_VulVul2.2 SAMN06553695 PRJNA378561 2018-05-25
790 reed vole (MF-2015 2020)[IGV] Alexandromys fortis GCF_014885135.2_M_Fortis_MF-2015_v1.1 SAMN07276871 PRJNA391843 2020-10-13
791 Reeves' muntjac[IGV] Muntiacus reevesi GCA_963930625.2_mMunRee1.2 SAMEA110690972 PRJEB72164 2026-02-01
792 Reeves' muntjac (alternate hap 2024)[IGV] Muntiacus reevesi GCA_963930665.1_mMunRee1.1_alternate_haplotype SAMEA110690972 PRJEB72163 2024-01-31
793 Reeves' muntjac (alternate hap 2026)[IGV] Muntiacus reevesi GCA_963930665.2_mMunRee1.2_alternate_haplotype SAMEA110690972 PRJEB72163 2026-02-26
794 Reeves' muntjac (primary hap 2024)[IGV] Muntiacus reevesi GCF_963930625.1_mMunRee1.1 SAMEA110690972 PRJEB72164 2024-01-31
795 reindeer (2023)[IGV] Rangifer tarandus GCA_963422255.1_RTA_final SAMEA114317201 PRJEB65312 2023-09-04
796 reindeer (US061 2019)[IGV] Rangifer tarandus GCA_004026565.1_RanTarSib_v1_BIUU SAMN07678109 PRJNA399416 2019-01-16
797 Rice's whale (hap1 2023)[IGV] Balaenoptera ricei GCA_028017805.1_mBalRic1.hap1 SAMN32629060 PRJNA921697 2023-01-26
798 Rice's whale (hap2 2023 refseq)[IGV] Balaenoptera ricei GCF_028023285.1_mBalRic1.hap2 SAMN32629060 PRJNA921698 2023-01-30
799 Rickett's big-footed myotis (AB-2021 2024)[IGV] Myotis pilosus GCA_036010255.1_ASM3601025v1 SAMN35325326 PRJNA975353 2024-01-23
800 Risso's dolphin[IGV] Grampus griseus GCF_964374135.1_mGraGri1.hap1.1 SAMEA111380541 PRJEB82944 2024-11-29
801 Risso's dolphin (hap1.1 2024)[IGV] Grampus griseus GCA_964374135.1_mGraGri1.hap1.1 SAMEA111380541 PRJEB82944 2024-11-29
802 Risso's dolphin (hap2.1 2024)[IGV] Grampus griseus GCA_964374185.1_mGraGri1.hap2.1 SAMEA111380541 PRJEB82945 2024-11-29
803 rodents (hap1 2026)[IGV] Anomalurus derbianus GCA_058744715.1_mAnoDer1.hap1 SAMN61084816 PRJNA1481591 2026-07-02
804 rodents (hap2 2026)[IGV] Anomalurus derbianus GCA_058744725.1_mAnoDer1.hap2 SAMN61084816 PRJNA1481590 2026-07-02
805 root vole (2023)[IGV] Alexandromys oeconomus GCA_963919705.1_Aoec_v1 SAMEA112852991 PRJEB61066 2023-12-20
806 Ryukyu mouse (2026)[IGV] Mus caroli GCF_978045245.1_Mus_caroli_1 SAMEA120968245 PRJEB47108 2026-03-01
807 Ryukyu mouse (v2 2017)[IGV] Mus caroli GCF_900094665.2_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28
808 Saanen dairy goat[IGV] Capra hircus GCA_015443085.1_Saanen_v1 SAMN14408556 PRJNA613503 2020-11-16
809 saddleback dolphin (alternate hap 2023)[IGV] Delphinus delphis GCA_949987525.1_mDelDel1.1_alternate_haplotype SAMEA111380534 PRJEB61572 2023-04-29
810 saddleback dolphin (alternate hap 2024)[IGV] Delphinus delphis GCA_949987525.2_mDelDel1.2_alternate_haplotype SAMEA111380534 PRJEB61572 2024-09-07
811 saddleback dolphin (primary hap 2024)[IGV] Delphinus delphis GCA_949987515.2_mDelDel1.2 SAMEA111380534 PRJEB61571 2024-09-07
812 saddleback dolphin (v1 primary hap 2023 refseq)[IGV] Delphinus delphis GCF_949987515.1_mDelDel1.1 SAMEA111380534 PRJEB61571 2023-05-01
813 saddleback dolphin (v2 primary hap 2024 refseq)[IGV] Delphinus delphis GCF_949987515.2_mDelDel1.2 SAMEA111380534 PRJEB61571 2024-09-07
814 saiga antelope[IGV] Saiga tatarica GCA_004024985.1_SaiTat_v1_BIUU SAMN07678151 PRJNA399418 2019-01-15
815 Schreibers' long-fingered ba[IGV] Miniopterus schreibersii GCF_964146895.1_mMinSch1.hap1.2 SAMEA113980738 PRJEB76208 2025-04-05
816 Schreibers' long-fingered bat (US075 2019)[IGV] Miniopterus schreibersii GCA_004026525.1_MinSch_v1_BIUU SAMN07678147 PRJNA399366 2019-01-16
817 Schreibers' long-fingered bat (v2 hap1 2025)[IGV] Miniopterus schreibersii GCA_964146895.2_mMinSch1.hap1.2 SAMEA113980738 PRJEB76208 2025-04-05
818 Schreibers' long-fingered bat (v2 hap2 2025)[IGV] Miniopterus schreibersii GCA_964145185.2_mMinSch1.hap2.2 SAMEA113980738 PRJEB76207 2025-04-05
819 scimitar-horned oryx[IGV] Oryx dammah GCF_014754425.2_SCBI_Odam_1.1 SAMN14518290 PRJNA622505 2020-09-25
820 Screaming hairy armadillo[IGV] Chaetophractus vellerosus GCA_004027955.1_ChaVel_v1_BIUU SAMN07678071 PRJNA399381 2019-01-16
821 sea otter (GAN:26980312 2017 refseq)[IGV] Enhydra lutris kenyoni GCF_002288905.1_ASM228890v2 SAMN07211055 PRJNA388419 2017-09-11
822 Seba's short-tailed bat[IGV] Carollia perspicillata GCA_004027735.1_CarPer_v1_BIUU SAMN07678055 PRJNA399439 2019-01-16
823 sei whale[IGV] Balaenoptera borealis GCF_965194805.1_mBalBor1.hap1.1 SAMEA114493134 PRJEB86465 2025-03-10
824 sei whale (hap1.1 2025)[IGV] Balaenoptera borealis GCA_965194805.1_mBalBor1.hap1.1 SAMEA114493134 PRJEB86465 2025-03-10
825 sei whale (hap2.1 2025)[IGV] Balaenoptera borealis GCA_965194725.1_mBalBor1.hap2.1 SAMEA114493134 PRJEB86464 2025-03-05
826 sheep (hu hu3095 2024)[IGV] Ovis aries GCA_040805955.1_T2T-sheep1.0 SAMN38029123 PRJNA1033229 2024-07-22
827 sheep (OAR_USU_Benz2616 2023)[IGV] Ovis aries GCF_016772045.2_ARS-UI_Ramb_v3.0 SAMN17575729 PRJNA675594 2023-07-20
828 sheep (Texel 2015)[IGV] Ovis aries GCA_000298735.2_Oar_v4.0 SAMN00116405 PRJNA169880 2015-11-20
829 short-tailed field vole (hap1.1 2026)[IGV] Microtus agrestis GCA_987114375.1_mMicAgr2.hap1.1 SAMEA120960998 PRJEB121458 2026-09-01
830 short-tailed shrew (CBP01580 primary hap 2026)[IGV] Blarina brevicauda GCA_051295465.2_mBlaBre1_p1.2 SAMN45019444 PRJNA1199524 2026-01-27
831 shrew mouse[IGV] Mus pahari GCF_900095145.1_PAHARI_EIJ_v1.1 SAMEA3367645 PRJEB14896 2017-04-28
832 Siberian hamster (SSSS 2022)[IGV] Phodopus sungorus GCA_023856395.1_Psun_UM_1.1 SAMN23733487 PRJNA786909 2022-06-29
833 Siberian musk deer (BS20 2019 Broad)[IGV] Moschus moschiferus GCA_004024705.1_MosMos_v1_BIUU SAMN07678096 PRJNA399405 2019-01-15
834 sika deer (Changchun, China MLH-2022 2023)[IGV] Cervus nippon GCA_034195675.1_ASM3419567v1 SAMN27748536 PRJNA831044 2023-12-07
835 small Madagascar hedgehog[IGV] Echinops telfairi GCF_000313985.2_ASM31398v2 SAMN00216137 PRJNA12590 2019-07-15
836 smoky shrew (2023)[IGV] Sorex fumeus GCF_029834395.1_SorFum_2.1 SAMN33271612 PRJNA826195 2023-04-17
837 snow leopard (11264 2022)[IGV] Panthera uncia GCF_023721935.1_Puncia_PCG_1.0 SAMN13911153 PRJNA602938 2022-06-16
838 snowshoe hare[IGV] Lepus americanus GCA_004026855.1_LepAme_v1_BIUU SAMN07678042 PRJNA399359 2019-01-16
839 social tuco-tuco[IGV] Ctenomys sociabilis GCA_004027165.1_CteSoc_v1_BIUU SAMN07678051 PRJNA399368 2019-01-16
840 Soft-furred tree mouse (WYS1704033 2022)[IGV] Typhlomys cinereus GCA_023101885.1_KIZ_TCIN_v1.0 SAMN11793607 PRJNA543996 2022-04-25
841 soprano pipistrelle (alternate hap 2023)[IGV] Pipistrellus pygmaeus GCA_949987765.1_mPipPyg2.1_alternate_haplotype SAMEA9921456 PRJEB61582 2023-04-29
842 soprano pipistrelle (hap1.2 2025)[IGV] Pipistrellus pygmaeus GCA_949987585.2_mPipPyg2.hap1.2 SAMEA9921456 PRJEB61581 2025-04-09
843 soprano pipistrelle (hap2.2 2025)[IGV] Pipistrellus pygmaeus GCA_949987765.2_mPipPyg2.hap2.2 SAMEA9921456 PRJEB61582 2025-04-09
844 soprano pipistrelle (primary hap 2023)[IGV] Pipistrellus pygmaeus GCA_949987585.1_mPipPyg2.1 SAMEA9921456 PRJEB61581 2023-05-01
845 South African ground squirrel[IGV] Xerus inauris GCA_004024805.1_XerIna_v1_BIUU SAMN07678119 PRJNA399425 2019-01-15
846 Southeastern Asian house mouse (2016)[IGV] Mus musculus castaneus GCA_001624445.1_CAST_EiJ_v1 SAMN04489822 PRJNA310854 2016-04-26
847 Southeastern Asian house mouse (2022)[IGV] Mus musculus castaneus GCA_921999005.2_CAST_EiJ_v3 SAMEA9544174 PRJEB47108 2022-07-01
848 Southeastern Asian house mouse (T2T 2024)[IGV] Mus musculus castaneus GCA_964188545.1_CAST_EiJ_T2T_v1 SAMEA115765482 PRJEB47108 2024-06-23
849 Southern African pygmy mouse (2020)[IGV] Mus minutoides GCA_902729485.2_Mus_minutoides_I2396_v1 SAMEA6377509 PRJEB35625 2020-09-25
850 southern elephant seal[IGV] Mirounga leonina GCF_011800145.1_KU_Mleo_1.0 SAMN13282320 PRJNA587380 2020-03-31
851 southern flying squirrel (Volans SFS_CC1 2021)[IGV] Glaucomys volans GCA_020662805.1_ASM2066280v1 SAMN18810840 PRJNA723289 2021-10-28
852 southern grasshopper mouse (2020 genbank)[IGV] Onychomys torridus GCA_903995425.1_mOncTor1.1 SAMEA104026389 PRJEB39770 2020-08-21
853 southern grasshopper mouse (2020 refseq)[IGV] Onychomys torridus GCF_903995425.1_mOncTor1.1 SAMEA104026389 PRJEB39770 2020-08-21
854 Southern marsupial mole (Waite Creek area ABTC07570 2026)[IGV] Notoryctes typhlops GCA_048126345.2_mNotTyp1.pri SAMN45131536 PRJNA1193092 2026-01-23
855 southern multimammate mouse[IGV] Mastomys coucha GCF_008632895.1_UCSF_Mcou_1 SAMN07635206 PRJNA406979 2019-09-24
856 southern tamandua (mTamTet1 alternate hap 2022)[IGV] Tamandua tetradactyla GCA_023853755.1_mTamTet1.alt SAMN12612337 PRJNA561940 2022-06-22
857 southern tamandua (mTamTet1 primary hap 2022 genbank)[IGV] Tamandua tetradactyla GCA_023851605.1_mTamTet1.pri SAMN12612337 PRJNA561939 2022-06-22
858 southern tamandua (mTamTet1 primary hap 2022 refseq)[IGV] Tamandua tetradactyla GCF_023851605.1_mTamTet1.pri SAMN12612337 PRJNA561939 2022-06-22
859 southern three-banded armadillo[IGV] Tolypeutes matacus GCA_004025125.1_TolMat_v1_BIUU SAMN07678115 PRJNA399423 2019-01-15
860 southern two-toed sloth (mChoDid1 alternate hap 2020)[IGV] Choloepus didactylus GCA_015220265.1_mChoDid1.alt SAMN12612024 PRJNA561938 2020-11-02
861 southern two-toed sloth (mChoDid1 primary hap 2020)[IGV] Choloepus didactylus GCF_015220235.1_mChoDid1.pri SAMN12612024 PRJNA561937 2020-11-03
862 southern two-toed sloth (primary hap 2020)[IGV] Choloepus didactylus GCA_015220235.1_mChoDid1.pri SAMN12612024 PRJNA561937 2020-11-03
863 southern white rhinoceros (SDZICR_KB13650 2012 refseq)[IGV] Ceratotherium simum simum GCF_000283155.1_CerSimSim1.0 SAMN00778988 PRJNA74583 2012-07-31
864 Southern yellow bat (hap1 2026)[IGV] Lasiurus ega GCA_058971415.1_mLasEga1.hap1 SAMN61084938 PRJNA1481626 2026-07-06
865 Southern yellow bat (hap2 2026)[IGV] Lasiurus ega GCA_058972195.1_mLasEga1.hap2 SAMN61084938 PRJNA1481625 2026-07-06
866 Sowerby's beaked whale[IGV] Mesoplodon bidens GCF_964165515.1_mMesBid2.hap1.1 SAMEA112165298 PRJEB76218 2024-06-06
867 Sowerby's beaked whale (hap1 2024)[IGV] Mesoplodon bidens GCA_964165515.1_mMesBid2.hap1.1 SAMEA112165298 PRJEB76218 2024-06-06
868 Sowerby's beaked whale (hap2 2024)[IGV] Mesoplodon bidens GCA_964148845.1_mMesBid2.hap2.1 SAMEA112165298 PRJEB76217 2024-06-06
869 Sowerby's beaked whale (US080 2019)[IGV] Mesoplodon bidens GCA_004027085.1_MesBid_v1_BIUU SAMN07678145 PRJNA399476 2019-01-16
870 sperm whale (hap1.1 2026)[IGV] Physeter macrocephalus GCA_978012005.1_mPhyCat2.hap1.1 SAMEA116350249 PRJEB106086 2026-02-01
871 sperm whale (SW-GA 2023)[IGV] Physeter macrocephalus GCF_002837175.3_ASM283717v5 SAMN07836523 PRJNA411766 2023-02-28
872 spotted hyena (KB4526 2019)[IGV] Crocuta crocuta GCF_008692635.1_BGI_CrCroc_1.0 SAMN12283067 PRJNA554753 2019-09-24
873 spotted-tailed quoll (Chaos hap1 2025)[IGV] Dasyurus maculatus GCA_048593285.1_ASM4859328v1 SAMN47326980 PRJNA1235415 2025-03-17
874 spotted-tailed quoll (Chaos hap2 2025)[IGV] Dasyurus maculatus GCA_048593245.1_ASM4859324v1 SAMN47326980 PRJNA1235414 2025-03-17
875 star-nosed mole[IGV] Condylura cristata GCF_000260355.1_ConCri1.0 SAMN00727830 PRJNA72447 2012-05-01
876 Steller sea lion[IGV] Eumetopias jubatus GCF_004028035.1_ASM402803v1 SAMN09402722 PRJNA475770 2019-01-15
877 Stephens's kangaroo rat[IGV] Dipodomys stephensi GCA_004024685.1_DipSte_v1_BIUU SAMN07678080 PRJNA399390 2019-01-15
878 steppe mouse (ZRU 2018)[IGV] Mus spicilegus GCA_003336285.1_MUSP714 SAMN08141584 PRJNA421365 2018-07-23
879 Stoliczka's trident bat (China 2021113_DDA alternate hap 2024)[IGV] Aselliscus stoliczkanus GCA_043727795.1_ASM4372779v1 SAMN33370315 PRJNA936805 2024-10-24
880 Stoliczka's trident bat (China 2021113_DDA primary hap 2024)[IGV] Aselliscus stoliczkanus GCA_043727835.1_ASM4372783v1 SAMN33370315 PRJNA936806 2024-10-24
881 straw-colored fruit bat[IGV] Eidolon helvum GCA_000465285.1_ASM46528v1 SAMN02212690 PRJNA209406 2013-09-13
882 stripe-headed round-eared bat[IGV] Tonatia bakeri GCA_004024845.1_TonSau_v1_BIUU SAMN07678031 PRJNA399356 2019-01-15
883 striped dolphin (alternate hap 2023)[IGV] Stenella coeruleoalba GCA_951394445.1_mSteCoe1.1_alternate_haplotype SAMEA111380539 PRJEB62075 2023-05-13
884 striped dolphin (primary hap 2023 genbank)[IGV] Stenella coeruleoalba GCA_951394435.1_mSteCoe1.1 SAMEA111380539 PRJEB62076 2023-06-16
885 striped dolphin (primary hap 2023 refseq)[IGV] Stenella coeruleoalba GCF_951394435.1_mSteCoe1.1 SAMEA111380539 PRJEB62076 2023-06-16
886 striped hyena (BS54 2019 Broad)[IGV] Hyaena hyaena GCA_004023945.1_HyaHya_v1_BIUU SAMN07678047 PRJNA399363 2019-01-15
887 striped hyena (Hyena2069 2018 Potsdam U)[IGV] Hyaena hyaena GCF_003009895.1_ASM300989v1 SAMN07212965 PRJNA390068 2018-03-19
888 sugar glider (PSGF00001 2023 genbank)[IGV] Petaurus breviceps papuanus GCA_028583685.1_PetGlider_PUasm1.0 SAMN29152153 PRJNA849992 2023-02-10
889 sugar glider (PSGF00001 2023 refseq)[IGV] Petaurus breviceps papuanus GCF_028583685.1_PetGlider_PUasm1.0 SAMN29152153 PRJNA849992 2023-02-10
890 Sumatran rhinoceros (hap1 2026)[IGV] Dicerorhinus sumatrensis sumatrensis GCA_060039915.1_mDicSum1.hap1 SAMN61130614 PRJNA1482661 2026-08-12
891 Sumatran rhinoceros (hap2 2026)[IGV] Dicerorhinus sumatrensis sumatrensis GCA_060039925.1_mDicSum1.hap2 SAMN61130614 PRJNA1482660 2026-08-12
892 Sumatran rhinoceros (Ipuh 2017)[IGV] Dicerorhinus sumatrensis sumatrensis GCA_002844835.1_ASM284483v1 SAMN07833945 PRJNA415733 2017-12-19
893 Sumatran serow (serow.1 2024)[IGV] Capricornis sumatraensis GCF_032405125.1_serow.2 SAMN36864952 PRJNA1002856 2024-03-13
894 Sunda flying lemur (2014 WashU)[IGV] Galeopterus variegatus GCF_000696425.1_G_variegatus-3.0.2 SAMN01758971 PRJNA20511 2014-06-05
895 Sunda flying lemur (US047 2019 Broad)[IGV] Galeopterus variegatus GCA_004027255.1_GalVar_v1_BIUU SAMN07678019 PRJNA399345 2019-01-16
896 tailed tailless bat[IGV] Anoura caudifer GCA_004027475.1_AnoCau_v1_BIUU SAMN07678033 PRJNA399350 2019-01-16
897 tailess tenrec (hap1 2025 genbank)[IGV] Tenrec ecaudatus GCA_050624435.1_mTenEca1.hap1 SAMN48288336 PRJNA1258044 2025-05-30
898 tailess tenrec (hap1 2025 refseq)[IGV] Tenrec ecaudatus GCF_050624435.1_mTenEca1.hap1 SAMN48288336 PRJNA1258044 2025-05-30
899 tailess tenrec (hap2 2025)[IGV] Tenrec ecaudatus GCA_050624465.1_mTenEca1.hap2 SAMN48288336 PRJNA1258045 2025-05-30
900 takin (Tak-1 2022)[IGV] Budorcas taxicolor GCF_023091745.1_Takin1.1 SAMN22814979 PRJNA776710 2022-04-22
901 Talazac's shrew tenrec[IGV] Nesogale talazaci GCA_004026705.1_MicTal_v1_BIUU SAMN07678058 PRJNA399450 2019-01-16
902 tammar wallaby (alternate hap 2023)[IGV] Notamacropus eugenii GCA_028389975.1_mMacEug1.alt SAMN28408687 PRJNA838351 2023-02-01
903 tammar wallaby (Barry hap1 2025)[IGV] Notamacropus eugenii GCA_048593335.1_ASM4859333v1 SAMN47327929 PRJNA1235426 2025-03-17
904 tammar wallaby (Barry hap2 2025)[IGV] Notamacropus eugenii GCA_048593345.1_ASM4859334v1 SAMN47327929 PRJNA1235425 2025-03-17
905 tammar wallaby (v2 primary hap 2023 refseq)[IGV] Notamacropus eugenii GCF_028372415.1_mMacEug1.pri_v2 SAMN28408687 PRJNA838350 2023-02-06
906 Tasmanian devil (McLovin hap1 2025)[IGV] Sarcophilus harrisii GCA_048593225.1_ASM4859322v1 SAMN47327921 PRJNA1235421 2025-03-17
907 Tasmanian devil (McLovin hap2 2025)[IGV] Sarcophilus harrisii GCA_048593325.1_ASM4859332v1 SAMN47327921 PRJNA1235420 2025-03-17
908 Tasmanian devil (primary hap 2019)[IGV] Sarcophilus harrisii GCF_902635505.1_mSarHar1.11 SAMEA6099886 PRJEB35073 2019-11-07
909 Tasmanian wolf (PY-MV-C5757 2022)[IGV] Thylacinus cynocephalus GCA_007646695.3_UniMelb_ThyCyn2.0_hybrid_assembly SAMN06049672 PRJNA354646 2022-04-04
910 thirteen-lined ground squirrel (2021 HiC)[IGV] Ictidomys tridecemlineatus GCF_016881025.1_HiC_Itri_2 SAMN08111062 PRJNA647389 2021-02-17
911 thirteen-lined ground squirrel (hap1 2025)[IGV] Ictidomys tridecemlineatus GCA_052094955.1_mIctTri1.hap1 SAMN49664984 PRJNA1282790 2025-08-18
912 thirteen-lined ground squirrel (hap2 2025)[IGV] Ictidomys tridecemlineatus GCA_052094965.1_mIctTri1.hap2 SAMN49664984 PRJNA1282791 2025-08-18
913 thirteen-lined ground squirrel (mIctTri1hap1 2025)[IGV] Ictidomys tridecemlineatus GCF_052094955.1_mIctTri1.hap1 SAMN49664984 PRJNA1282790 2025-08-18
914 Tibetan sand fox (lyu1992 2022)[IGV] Vulpes ferrilata GCA_024500485.1_ASM2450048v1 SAMN22073298 PRJNA768988 2022-08-01
915 tiger[IGV] Panthera tigris GCF_018350195.1_P.tigris_Pti1_mat1.1 SAMN17054330 PRJNA684344 2021-05-13
916 Townsend's big-eared bat (COTO_CA2020_CCGPhap1 2025)[IGV] Corynorhinus townsendii GCA_026230055.2_mCorTow1.1.hap1 SAMN31536067 PRJNA896196 2025-12-17
917 Townsend's big-eared bat (COTO_CA2020_CCGPhap2 2025)[IGV] Corynorhinus townsendii GCA_026230045.2_mCorTow1.1.hap2 SAMN31536067 PRJNA896195 2025-12-17
918 Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022)[IGV] Corynorhinus townsendii GCA_026230055.1_mCorTow1.0.hap1 SAMN31536067 PRJNA896196 2022-11-18
919 Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022)[IGV] Corynorhinus townsendii GCA_026230045.1_mCorTow1.0.hap2 SAMN31536067 PRJNA896195 2022-11-18
920 Transcaucasian mole vole[IGV] Bramus lutescens GCA_001685075.1_ASM168507v1 SAMN04317027 PRJNA305123 2016-07-14
921 Trefoil horseshoe bat (Malaysia alternate hap 2024)[IGV] Rhinolophus trifoliatus GCA_043728055.1_ASM4372805v1 SAMN33421007 PRJNA937896 2024-10-24
922 trefoil horseshoe bat (Malaysia primary hap 2024)[IGV] Rhinolophus trifoliatus GCA_043728145.1_ASM4372814v1 SAMN33421007 PRJNA937897 2024-10-24
923 True's beaked whale[IGV] Mesoplodon mirus GCF_964341445.1_mMesMir1.hap1.1 SAMEA115358965 PRJEB82817 2024-11-28
924 True's beaked whale (hap1.1 2024)[IGV] Mesoplodon mirus GCA_964341445.1_mMesMir1.hap1.1 SAMEA115358965 PRJEB82817 2024-11-28
925 True's beaked whale (hap1.2 2026)[IGV] Mesoplodon mirus GCA_964341445.2_mMesMir1.hap1.2 SAMEA115358965 PRJEB82817 2026-07-06
926 True's beaked whale (hap2.1 2024)[IGV] Mesoplodon mirus GCA_964341485.1_mMesMir1.hap2.1 SAMEA115358965 PRJEB82818 2024-11-28
927 True's beaked whale (hap2.2 2026)[IGV] Mesoplodon mirus GCA_964341485.2_mMesMir1.hap2.2 SAMEA115358965 PRJEB82818 2026-07-06
928 Upper Galilee mountains blind mole rat (2095 2014 refseq)[IGV] Nannospalax galili GCF_000622305.1_S.galili_v1.0 SAMN02299330 PRJNA213569 2014-06-05
929 Vancouver Island marmot (RANI-1049 2019)[IGV] Marmota vancouverensis GCA_005458795.1_GSC_VIM_1.0 SAMN09425912 PRJNA476112 2019-05-16
930 vaquita (alternate hap mPhoSin1 2019)[IGV] Phocoena sinus GCA_008692045.1_mPhoSin1.alt SAMN12325353 PRJNA557832 2019-09-24
931 vaquita (mPhoSin1 2019)[IGV] Phocoena sinus GCF_008692025.1_mPhoSin1.pri SAMN12325353 PRJNA557831 2019-09-26
932 vaquita (primary hap 2019)[IGV] Phocoena sinus GCA_008692025.1_mPhoSin1.pri SAMN12325353 PRJNA557831 2019-09-26
933 water buffalo (Mediterranean 2018)[IGV] Bubalus bubalis GCF_003121395.1_ASM312139v1 SAMN08640746 PRJNA437177 2018-05-14
934 water buffalo (Murrah 2021)[IGV] Bubalus bubalis GCF_019923935.1_NDDB_SH_1 SAMN11104991 PRJNA525182 2021-09-10
935 water vole (JQ59JK4JDI 2023)[IGV] Microtus richardsoni GCA_019206885.2_ASM1920688v2 SAMN10536510 PRJNA509068 2023-02-09
936 Weddell seal (Sample4059 2025)[IGV] Leptonychotes weddellii GCF_054177405.1_ASM5417740v2 SAMN31952330 PRJNA512907 2025-12-24
937 Weddell seal (WS11-02 2013 refseq)[IGV] Leptonychotes weddellii GCF_000349705.1_LepWed1.0 SAMN00672463 PRJNA68235 2013-03-29
938 western European hedgehog (2012 refseq)[IGV] Erinaceus europaeus GCF_000296755.1_EriEur2.0 SAMN00760989 PRJNA74585 2012-09-19
939 western European hedgehog (alternate hap 2023)[IGV] Erinaceus europaeus GCA_950295305.1_mEriEur2.1_alternate_haplotype SAMEA13207416 PRJEB61757 2023-05-01
940 western European hedgehog (primary hap 2023 refseq)[IGV] Erinaceus europaeus GCF_950295315.1_mEriEur2.1 SAMEA13207416 PRJEB61758 2023-05-01
941 western European house mouse (C57BL/6 2026)[IGV] Mus musculus domesticus GCA_056825265.1_T2T_mhaESC_v1.5 SAMN45902038 PRJNA1200255 2026-04-21
942 western European house mouse (WSB_EiJ v3 2022)[IGV] Mus musculus domesticus GCA_921998345.2_WSB_EiJ_v3 SAMEA9544176 PRJEB47108 2022-07-01
943 western roe deer (2023)[IGV] Capreolus capreolus GCA_951849835.1_ETH_CapCap1 SAMEA112852577 PRJEB61062 2023-07-15
944 western spotted skunk[IGV] Spilogale gracilis GCA_004023965.1_SpiGra_v1_BIUU SAMN07678050 PRJNA399437 2019-01-15
945 western wild mouse (SPRET_EiJ v3 2022)[IGV] Mus spretus GCA_921997135.2_SPRET_EiJ_v3 SAMEA9544175 PRJEB47108 2022-06-30
946 whiskered bat (hap1 2024)[IGV] Myotis mystacinus GCA_964094495.2_mMyoMys1.hap1.1 SAMEA114250307 PRJEB76004 2024-06-12
947 whiskered bat (hap1.2 2025)[IGV] Myotis mystacinus GCA_964094495.3_mMyoMys1.hap1.2 SAMEA114250307 PRJEB76004 2025-10-26
948 whiskered bat (hap2 2024)[IGV] Myotis mystacinus GCA_964195625.1_mMyoMys1.hap2.1 SAMEA114250307 PRJEB76003 2024-06-30
949 white-beaked dolphin (alternate hap 2023)[IGV] Lagenorhynchus albirostris GCA_949774935.1_mLagAlb1.1_alternate_haplotype SAMEA111380537 PRJEB60993 2023-04-09
950 white-beaked dolphin (primary hap 2023 refseq)[IGV] Lagenorhynchus albirostris GCF_949774975.1_mLagAlb1.1 SAMEA111380537 PRJEB60994 2023-04-08
951 white-footed mouse (LL stock 2020)[IGV] Peromyscus leucopus GCF_004664715.2_UCI_PerLeu_2.1 SAMN03488028 PRJNA281425 2020-10-02
952 white-tailed deer (Illinois 20LAN1187 2024)[IGV] Odocoileus virginianus GCF_023699985.2_Ovbor_1.2 SAMN23390018 PRJNA782613 2024-10-17
953 white-tailed deer (Pink-7 2017 refseq)[IGV] Odocoileus virginianus texanus GCF_002102435.1_Ovir.te_1.0 SAMN05363940 PRJNA317745 2017-04-20
954 white-toothed pygmy shrew (mSunEtr1 alternate hap 2022)[IGV] Suncus etruscus GCA_024140225.1_mSunEtr1.alt.cur SAMN28420931 PRJNA839355 2022-07-05
955 white-toothed pygmy shrew (mSunEtr1 primary hap 2022)[IGV] Suncus etruscus GCF_024139225.1_mSunEtr1.pri.cur SAMN28420931 PRJNA838699 2022-07-06
956 white-toothed pygmy shrew (primary hap 2022)[IGV] Suncus etruscus GCA_024139225.1_mSunEtr1.pri.cur SAMN28420931 PRJNA838699 2022-07-06
957 wild Bactrian camel (BCGSAC Cfer 1.0 YT-003-E 2020)[IGV] Camelus ferus GCF_009834535.1_BCGSAC_Cfer_1.0 SAMN12102236 PRJNA550024 2020-01-08
958 wild Bactrian camel (CB1 Naran 2013 refseq)[IGV] Camelus ferus GCF_000311805.1_CB1 SAMN01910617 PRJNA76177 2013-07-30
959 wild goat[IGV] Capra aegagrus GCA_000978405.1_CapAeg_1.0 SAMN03282421 PRJNA261263 2015-04-24
960 wild yak (GX-2022 2023)[IGV] Bos mutus GCF_027580195.1_NWIPB_WYAK_1.1 SAMN18643077 PRJNA720245 2023-01-09
961 wild yak (yakQH1 2013)[IGV] Bos mutus GCF_000298355.1_BosGru_v2.0 SAMN00744358 PRJNA74739 2013-01-09
962 winter white dwarf (Siberian hamster Psun_Stras_1 2023)[IGV] Phodopus sungorus GCA_030556225.1_Psun-UiT-1 SAMN28537735 PRJNA839344 2023-07-31
963 woodchuck (v1.1 L192 2022)[IGV] Marmota monax GCF_021218885.2_Marmota_monax_Labrador192_F-V1.1 SAMN21332666 PRJNA761405 2022-08-11
964 woodland dormouse[IGV] Graphiurus murinus GCA_004027655.1_GraMur_v1_BIUU SAMN07678085 PRJNA399395 2019-01-16
965 woodland thicket rat[IGV] Grammomys surdaster GCF_004785775.1_NIH_TR_1.0 SAMN11172698 PRJNA526040 2019-04-12
966 woolly hare (The Qinghai-Tibet Plateau SH-2023 2024)[IGV] Lepus oiostolus GCA_036325905.1_CXZ SAMN37736917 PRJNA1026309 2024-02-05
967 wrinkle-faced bat (hap1 2026)[IGV] Centurio senex GCA_058972505.1_mCenSen1.hap1 SAMN61084919 PRJNA1481608 2026-07-06
968 wrinkle-faced bat (hap2 2026)[IGV] Centurio senex GCA_058972435.1_mCenSen1.hap2 SAMN61084919 PRJNA1481607 2026-07-06
969 Yangtze finless porpoise (v2 wild 2018 refseq)[IGV] Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.2_Neophocaena_asiaeorientalis_V1.1 SAMN05831577 PRJNA343136 2018-04-03
970 Yangtze River dolphin (v1.1 BGI 2013 refseq)[IGV] Lipotes vexillifer GCF_000442215.2_Lipotes_vexillifer_v1.1 SAMN02953859 PRJNA174066 2013-07-24
971 yellow-bellied marmot (hap1 2025 refseq)[IGV] Marmota flaviventris GCF_047511675.1_mMarFla1.hap1 SAMN45932315 PRJNA1201324 2025-02-10
972 yellow-bellied marmot (hap2 2025)[IGV] Marmota flaviventris GCA_047512175.1_mMarFla1.hap2 SAMN45932315 PRJNA1201325 2025-02-10
973 yellow-bellied marmot (SJ_83 v2.1 2019)[IGV] Marmota flaviventris GCF_003676075.3_GSC_YBM_2.1 SAMN10078668 PRJNA491472 2019-05-24
974 yellow-footed antechinus (v2 Samford, QLD, Australia AdamAnt 2021)[IGV] Antechinus flavipes GCF_016432865.1_AdamAnt_v2 SAMN16807749 PRJNA565840 2021-01-06
975 yellow-spotted hyrax[IGV] Heterohyrax brucei GCA_004026845.1_HetBruBak_v1_BIUU SAMN07678088 PRJNA399398 2019-01-16
976 yellow-spotted hyrax (mHetBru1 2023)[IGV] Heterohyrax brucei GCA_028571685.1_mHetBru1.pri SAMN33092455 PRJNA931597 2023-02-10
977 yellow-spotted hyrax (mHetBru1 alternate hap 2023)[IGV] Heterohyrax brucei GCA_028571665.1_mHetBru1.alt SAMN33092455 PRJNA931598 2023-02-08
978 Yong Hoi Sen's woolly horseshoe bat (Malaysia 20210929_DDd alternate hap 2024)[IGV] Rhinolophus yonghoiseni GCA_043880365.1_ASM4388036v1 SAMN33413875 PRJNA937640 2024-10-25
979 Yong Hoi Sen's woolly horseshoe bat (Malaysia 20210929_DDd primary hap 2024)[IGV] Rhinolophus yonghoiseni GCA_043880425.1_ASM4388042v1 SAMN33413875 PRJNA937641 2024-10-28
980 Yuma myotis (MYYU_CA2020_CCGP alternate hap 2023)[IGV] Myotis yumanensis GCA_028536395.1_mMyoYum1.0.hap2 SAMN30526064 PRJNA887415 2023-02-07
981 Yuma myotis (MYYU_CA2020_CCGP primary hap 2023 refseq)[IGV] Myotis yumanensis GCF_028538775.1_mMyoYum1.0.hap1 SAMN30526064 PRJNA887416 2023-02-07
982 zebra duiker (hap1 2025)[IGV] Cephalophula zebra GCA_054099735.1_mCepZeb1.hap1 SAMN53317028 PRJNA1366726 2025-12-18
983 zebra duiker (hap2 2025)[IGV] Cephalophula zebra GCA_054099755.1_mCepZeb1.hap2 SAMN53317028 PRJNA1366727 2025-12-18
984 zebu cattle (Hainan HN024 2024)[IGV] Bos indicus GCA_039881165.1_ASM3988116v1 SAMN26237614 PRJNA810280 2024-05-29
985 zebu cattle (Nelore 2014 refseq)[IGV] Bos indicus GCF_000247795.1_Bos_indicus_1.0 SAMN02953802 PRJNA72827 2014-11-25
986 zebu cattle (Sahiwal x Tharparkar maternal NIAB-ARS_2022 2023)[IGV] Bos indicus GCF_029378745.1_NIAB-ARS_B.indTharparkar_mat_pri_1.0 SAMN31208777 PRJNA897888 2023-03-24

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 627 assemblies assembly stats track stats
Mammals 986 assemblies assembly stats track stats
Birds 631 assemblies assembly stats track stats
Fishes 874 assemblies assembly stats track stats
other vertebrates 519 assemblies assembly stats track stats
Invertebrates 1999 assemblies assembly stats track stats
Plants 466 assemblies assembly stats track stats
Fungi 4136 assemblies assembly stats track stats
Viruses 15117 assemblies assembly stats track stats
Archaea 2977 assemblies assembly stats track stats
Bacteria 23960 assemblies assembly stats track stats
legacy/superseded 691 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 1303 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 464 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 5522 assemblies assembly stats track stats