VGP - Vertebrate Genomes Project assembly hubs, track statistics

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of trio assemblies, maternal/paternal)

See also: hub access, assembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser		 ncbiRefSeq ncbiGene xenoRefGene augustus
genes		 Ensembl
genes		 gc5 base AGP
gap		 all
gaps		 assembly
sequences		 Repeat
Masker		 TRF
simpleRepeat		 window
Masker		 gap
Overlap		 tandem
Dups		 cpg
unmasked		 cpg
island
1 African grass rat (maternal 2020)
GCA_011750645.1		 n/a n/a 20,916
(2.01 %)		 19,513
(1.43 %)		 n/a 41.37
(98.89 %)		 0
(0 %)		 1,526
(1.11 %)		 1,610
(100.00 %)		 4,928,847
(37.45 %)		 1,652,295
(5.20 %)		 13,507,965
(32.27 %)		 0
(0 %)		 1,023,525
(1.96 %)		 17,712
(0.51 %)		 16,897
(0.46 %)
2 African grass rat (paternal 2020)
GCA_011762545.1		 n/a n/a 20,796
(2.00 %)		 19,611
(1.43 %)		 n/a 41.42
(97.70 %)		 0
(0 %)		 1,563
(2.30 %)		 1,740
(100.00 %)		 4,904,243
(37.25 %)		 1,672,608
(5.37 %)		 13,465,246
(32.19 %)		 1
(0.00 %)		 1,034,950
(2.07 %)		 17,677
(0.50 %)		 16,772
(0.46 %)
3 African grass rat (paternal X 2020 refseq)
GCF_011762505.1		 45,963
(2.46 %)		 n/a 20,878
(1.99 %)		 19,613
(1.43 %)		 37,929
(2.32 %)		 41.39
(99.19 %)		 0
(0 %)		 1,624
(0.81 %)		 1,595
(100.00 %)		 4,939,557
(37.33 %)		 1,674,970
(5.40 %)		 13,613,429
(32.71 %)		 2
(0.00 %)		 1,065,249
(2.09 %)		 17,767
(0.51 %)		 16,852
(0.46 %)
4 budgerigar (maternal 2020)
GCA_012275265.1		 n/a n/a 12,659
(1.89 %)		 22,063
(2.28 %)		 n/a 41.89
(94.20 %)		 0
(0 %)		 388
(5.80 %)		 930
(100.00 %)		 504,677
(9.95 %)		 268,616
(3.12 %)		 5,481,198
(20.78 %)		 1
(0.00 %)		 317,306
(2.01 %)		 20,278
(1.55 %)		 16,758
(1.05 %)
5 budgerigar (maternal Z 2020 refseq)
GCF_012275295.1		 32,026
(4.32 %)		 n/a 13,239
(1.87 %)		 23,063
(2.25 %)		 26,324
(3.11 %)		 41.80
(99.72 %)		 0
(0 %)		 284
(0.28 %)		 864
(100.00 %)		 538,374
(10.19 %)		 279,504
(3.12 %)		 5,874,531
(22.08 %)		 1
(0.00 %)		 324,793
(2.05 %)		 21,155
(1.61 %)		 17,590
(1.10 %)
6 budgerigar (paternal hap 2020)
GCA_012275275.1		 n/a n/a 13,127
(1.94 %)		 22,492
(2.30 %)		 n/a 41.84
(98.98 %)		 0
(0 %)		 737
(1.02 %)		 330
(100.00 %)		 505,478
(9.66 %)		 231,633
(2.15 %)		 5,778,405
(20.30 %)		 0
(0 %)		 277,857
(1.78 %)		 20,205
(1.61 %)		 17,519
(1.14 %)
7 common bottlenose dolphin (maternal 2020)
GCA_011762535.1		 n/a n/a 18,837
(1.77 %)		 20,857
(1.43 %)		 n/a 41.43
(99.73 %)		 0
(0 %)		 649
(0.27 %)		 985
(100.00 %)		 4,073,893
(46.15 %)		 630,039
(2.15 %)		 12,628,219
(35.41 %)		 1
(0.00 %)		 705,496
(1.85 %)		 65,379
(1.89 %)		 42,994
(1.34 %)
8 common bottlenose dolphin (maternal Y refseq 2020)
GCF_011762595.1		 67,207
(3.31 %)		 n/a 18,766
(1.77 %)		 20,528
(1.42 %)		 35,852
(1.58 %)		 41.44
(99.74 %)		 0
(0 %)		 674
(0.26 %)		 362
(100.00 %)		 4,069,115
(46.17 %)		 628,982
(2.12 %)		 12,490,891
(35.29 %)		 1
(0.00 %)		 629,903
(1.85 %)		 65,551
(1.90 %)		 43,136
(1.35 %)
9 common bottlenose dolphin (paternal 2020)
GCA_011762515.1		 n/a n/a 18,537
(1.77 %)		 20,619
(1.44 %)		 n/a 41.42
(98.08 %)		 0
(0 %)		 868
(1.92 %)		 1,166
(100.00 %)		 3,997,801
(45.93 %)		 609,838
(1.85 %)		 12,400,272
(34.53 %)		 1
(0.00 %)		 649,569
(1.73 %)		 64,630
(1.84 %)		 42,623
(1.32 %)
10 sterlet (maternal hap 2022 genbank)
GCA_902713425.1		 n/a n/a 22,306
(1.80 %)		 33,366
(4.09 %)		 n/a 39.56
(99.99 %)		 0
(0 %)		 402
(0.01 %)		 245
(100.00 %)		 1,126,738
(3.36 %)		 889,853
(6.73 %)		 8,766,715
(39.22 %)		 4
(0.00 %)		 1,059,859
(5.24 %)		 51,356
(1.84 %)		 13,633
(0.35 %)
11 sterlet (v2 paternal hap 2022)
GCA_902713435.2		 n/a n/a 24,717
(1.73 %)		 40,151
(4.13 %)		 74,807
(5.54 %)		 40.09
(99.99 %)		 0
(0 %)		 475
(0.01 %)		 1,517
(100.00 %)		 1,844,596
(9.77 %)		 1,119,340
(9.88 %)		 9,372,934
(41.58 %)		 8
(0.00 %)		 1,582,556
(6.83 %)		 65,007
(2.74 %)		 17,761
(0.38 %)
12 white-tufted-ear marmoset (maternal 2020)
GCA_011078405.1		 n/a n/a 21,684
(1.92 %)		 21,053
(1.29 %)		 n/a 40.97
(99.58 %)		 0
(0 %)		 1,068
(0.42 %)		 216
(100.00 %)		 5,099,933
(50.01 %)		 797,450
(2.45 %)		 15,059,591
(37.67 %)		 1
(0.00 %)		 1,026,612
(2.27 %)		 36,133
(0.92 %)		 26,329
(0.73 %)
13 white-tufted-ear marmoset (paternal X 2020)
GCA_011100555.1		 n/a n/a 21,709
(1.91 %)		 21,245
(1.29 %)		 70,349
(2.24 %)		 40.95
(99.53 %)		 0
(0 %)		 959
(0.47 %)		 353
(100.00 %)		 5,123,971
(49.94 %)		 785,181
(2.64 %)		 15,163,086
(37.93 %)		 1
(0.00 %)		 1,081,175
(2.37 %)		 36,768
(0.93 %)		 26,641
(0.74 %)
14 white-tufted-ear marmoset (v1.2 paternal 2021)
GCA_011100535.2		 n/a n/a 21,014
(1.91 %)		 20,671
(1.30 %)		 n/a 41.00
(99.58 %)		 0
(0 %)		 994
(0.42 %)		 1,217
(100.00 %)		 4,785,940
(47.16 %)		 804,242
(3.32 %)		 14,427,732
(38.00 %)		 1
(0.00 %)		 1,201,179
(2.61 %)		 36,057
(0.95 %)		 33,049
(0.84 %)
15 zebra finch (Blue55 paternal 2019)
GCA_008822125.1		 n/a n/a 12,384
(1.97 %)		 23,021
(2.44 %)		 n/a 41.74
(98.02 %)		 0
(0 %)		 828
(1.98 %)		 202
(100.00 %)		 511,324
(8.38 %)		 351,624
(2.53 %)		 6,328,918
(19.99 %)		 1
(0.00 %)		 233,403
(1.42 %)		 25,871
(2.29 %)		 20,873
(1.18 %)
16 zebra finch (Blue55 paternal W 2020)
GCF_008822105.2		 50,407
(7.20 %)		 n/a 12,470
(1.95 %)		 23,352
(2.42 %)		 n/a 41.81
(97.98 %)		 0
(0 %)		 857
(2.02 %)		 205
(100.00 %)		 529,829
(9.55 %)		 357,586
(2.56 %)		 6,359,599
(20.12 %)		 3
(0.00 %)		 246,785
(1.53 %)		 27,755
(2.36 %)		 21,477
(1.19 %)
17 zebra finch (v3 Blue55 maternal 2020)
GCA_008822115.3		 n/a n/a 11,950
(2.00 %)		 22,828
(2.51 %)		 n/a 42.06
(98.45 %)		 0
(0 %)		 583
(1.55 %)		 206
(100.00 %)		 494,110
(9.54 %)		 347,933
(2.80 %)		 5,875,448
(20.29 %)		 0
(0 %)		 249,341
(1.71 %)		 27,387
(2.57 %)		 20,823
(1.23 %)
TOTALS:total assembly count 17

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies