VGP - Vertebrate Genomes Project assembly hubs, assembly statistics

VGP logo

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of legacy/superseded assemblies)

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 African grass rat Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X 1,596 2,496,777,707 1,624 20,289,527 37.17
2 Atlantic halibut (genbank) Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri 57 596,792,676 290 3,413,390 24.17
3 Anna's hummingbird Calypte anna GCF_003957555.1_bCalAnn1_v1.p 159 1,059,687,259 429 16,096,788 20.87
4 blue whale Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 130 2,380,012,384 936 25,929,252 43.78
5 blunt-snouted clingfish Gouania willdenowi GCA_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
6 budgerigar Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z 865 1,171,635,651 284 3,236,129 22.13
7 California sea lion Zalophus californianus GCA_009762305.1_mZalCal1.pri 43 2,408,658,503 122 17,343,033 43.41
8 Canada lynx Lynx canadensis GCF_007474595.1_mLynCan4_v1.p 66 2,408,883,772 848 2,778,737 43.35
9 channel bull blenny Cottoperca gobio GCA_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
10 climbing perch Anabas testudineus GCA_900324465.2_fAnaTes1.2 50 555,641,398 266 3,606,496 21.33
11 common brushtail Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri 212 3,359,347,793 1,796 18,696,463 40.57
12 common bottlenose dolphin Tursiops truncatus GCA_011762595.1_mTurTru1.mat.Y 362 2,378,522,214 674 6,222,516 46.05
13 Eurasian water vole (2020) Arvicola amphibius GCF_903992535.1_mArvAmp1.1 216 2,297,765,997 872 6,026,660 32.43
14 European turtle dove (v1.1 2019 VGP) Streptopelia turtur GCA_901699155.1_bStrTur1.1 357 1,178,928,410 894 3,876,374 21.07
15 flier cichlid Archocentrus centrarchus GCA_007364275.2_fArcCen1 189 932,947,025 744 16,903,477 30.69
16 Gabon caecilian Geotrypetes seraphini GCA_902459505.1_aGeoSer1.1 163 3,779,413,726 433 5,502,713 52.86
17 golden eagle (2019) Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 142 1,203,454,851 191 4,639,807 19.26
18 greater horseshoe bat Rhinolophus ferrumequinum GCF_004115265.1_mRhiFer1_v1.p 134 2,075,768,562 158 7,546,098 34.48
19 greater pipefish Syngnathus acus GCA_901709675.1_fSynAcu1.1 87 324,331,233 43 13,700 25.95
20 green sea turtle (v1 2020) Chelonia mydas GCF_015237465.1_rCheMyd1.pri 99 2,134,593,249 294 11,959,915 31.97
21 kakapo Strigops habroptila GCA_004027225.2_bStrHab1.2.pri 90 1,148,615,375 373 10,544,081 20.53
22 Korean giant-fin mudskipper (genbank) Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri 124 752,621,857 700 7,178,561 39.10
23 leatherback sea turtle (v1 2019 genbank G10K VGP) Dermochelys coriacea GCA_009764565.1_rDerCor1.pri 55 2,165,403,198 558 5,729,700 34.13
24 leatherback sea turtle (v3 2020 refseq G10K VGP) Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 40 2,164,762,090 667 5,594,612 34.21
25 lumpfish (genbank) Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri 49 572,902,877 347 10,182,204 28.09
26 mute swan (2019) Cygnus olor GCA_009769625.1_bCygOlo1.pri 181 1,135,009,278 446 10,642,469 21.24
27 New Zealand spotty (genbank) Notolabrus celidotus GCA_009762535.1_fNotCel1.pri 468 846,760,650 1,135 14,268,481 33.39
28 northern pike Esox lucius GCA_011004845.1_fEsoLuc1.pri 53 918,749,000 112 1,022,735 32.97
29 pale spear-nosed bat Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p 141 2,117,764,065 831 22,966,458 30.49
30 platypus (v3 2020) Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 322 1,859,281,749 515 15,158,118 51.26
31 prehistoric monster fish Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 464 2,446,592,878 2,554 12,594,266 59.92
32 Siamese fighting fish (2019) Betta splendens GCF_900634795.2_fBetSpl5.2 70 441,388,503 328 29,269 23.93
33 Swainson's thrush (v1 2019 VGP) Catharus ustulatus GCF_009819885.1_bCatUst1.pri 161 1,131,616,430 428 12,903,595 22.52
34 thorny skate (genbank 2020) Amblyraja radiata GCA_010909765.1_sAmbRad1.pri 958 2,558,801,738 3,753 190,972,533 52.28
35 thorny skate (v1 2020) Amblyraja radiata GCF_010909765.1_sAmbRad1.pri 957 2,558,784,953 3,753 190,972,533 52.28
36 zebra finch (genbank 2020 Blue55 female) Taeniopygia guttata GCA_009859065.2_bTaeGut2.pri.v2 541 1,106,297,559 789 21,820,589 20.08
37 zebra finch (refseq 2019 Black17 male) Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
38 zebra finch (genbank 2019 Black17 male) Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
TOTALS:total assembly count 38 10,634 60,331,081,453 30,416 728,237,269  
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies