VGP - Vertebrate Genomes Project assembly hubs, assembly statistics

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of alternate/haplotype assemblies)

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Abyssinian ground-hornbill Bucorvus abyssinicus GCA_009769595.1_bBucAby1.alt 3,527 1,024,138,499 0 0 18.52
2 Aeolian wall lizard (La Canna islet rPodRaf1 alternate hap 2022) Podarcis raffonei GCA_027172095.1_rPodRaf1.alt 4,811 182,031,793 3 260 27.46
3 African hunting dog (LycPic1hap1 2024) Lycaon pictus GCA_040955645.1_LycPic1.final.hap1 85 2,260,356,192 82 8,200 32.97
4 African ostrich (bStrCam1hap2 2024) Struthio camelus GCA_040807015.1_bStrCam1.hap2 250 1,383,056,266 82 16,400 28.29
5 African savanna elephant (hap1 mLoxAfr1 2023) Loxodonta africana GCA_030020305.1_mLoxAfr1.hap1 1,084 3,575,747,632 169 5,227,145 50.50
6 Alvarez's mastiff bat (hap2 2024) Molossus alvarezi GCA_037176705.1_mMolAlv2.hap2 287 2,504,806,577 75 11,900 41.09
7 American alligator (2023 genbank) Alligator mississippiensis GCA_030867065.1_rAllMis1 670 2,373,280,586 136 4,475,704 43.05
8 American flamingo Phoenicopterus ruber ruber GCA_009819805.1_bPhoRub2.alt 3,529 1,167,509,893 0 0 20.15
9 American mink (hap2 2024) Neogale vison GCA_964106205.1_mNeoVis2.hap2.1 351 2,662,777,898 2,849 569,815 37.60
10 American pika (hap2 mOchPri1 2023) Ochotona princeps GCA_030435715.1_mOchPri1.hap2 6,117 2,534,779,560 375 74,504 45.99
11 American shad (fAloSap1 alternate hap 2021) Alosa sapidissima GCA_018492705.1_fAloSap1.alt 5,410 852,425,339 1 20 38.65
12 amphioxus (hap1 2024) Branchiostoma lanceolatum GCA_035149815.1_klBraLanc5.hap1 65 455,264,310 81 12,545 27.22
13 Anna's hummingbird Calypte anna GCA_003957575.1_bCalAnn1_v1.h 3,803 952,083,371 6 2,998 20.33
14 Antarctic lanternfish (alternate hap 2023) Electrona antarctica GCA_951214905.1_fEleAnt2.1_alternate_haplotype 11,436 1,301,265,211 0 0 47.62
15 Arabian camel (hap2 2024) Camelus dromedarius GCA_036321565.1_mCamDro1.hap2 173 2,086,495,379 210 42,000 31.48
16 Aristotle's catfish (alternate hap 2022) Silurus aristotelis GCA_946807865.1_fSilAri3.1_alternate_haplotype 7,617 713,076,206 0 0 40.74
17 Asian bonytongue Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype 2,006 751,313,211 1 25 26.29
18 Asiatic elephant (mEleMax1 alternate hap 2022) Elephas maximus indicus GCA_024166345.1_mEleMax1_alternate_haplotype 6,361 2,952,809,375 0 0 47.31
19 Asiatic tapir (hap1 2023) Tapirus indicus GCA_031878655.1_mTapInd1.hap1 259 2,498,393,425 79 15,800 38.08
20 Atlantic cod Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype 3,592 584,119,146 3 75 33.87
21 Atlantic hagfish (MG_SS 2024) Myxine glutinosa GCF_040869285.1_UKY_Mglu_1.0 4,270 3,829,277,745 4,876 2,253,344 75.19
22 Atlantic halibut Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt 4,053 676,690,381 62 3,468 24.50
23 Atlantic horse mackerel (alternate hap 2021) Trachurus trachurus GCA_905171655.2_fTraTra1.2_alternate_haplotype 1,049 797,027,743 74 4,927 32.73
24 Atlantic stingray (hap2 2023) Hypanus sabinus GCA_030144785.1_sHypSab1.hap2 1,412 3,635,158,545 1,633 326,600 50.34
25 Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024) Lagenorhynchus acutus GCA_964270935.1_mLagAcu1.hap2.1 879 2,422,718,875 917 183,400 39.19
26 Australian echidna (mTacAcu1 alternate hap 2020) Tachyglossus aculeatus GCA_015852515.1_mTacAcu1.alt 3,482 1,885,160,879 26 440,103 56.70
27 axolotl (DD151 2021) Ambystoma mexicanum GCA_002915635.3_AmbMex60DD 27,157 28,206,905,576 184,422 3,685,753 68.20
28 banded archerfish (fToxJac2 alternate hap 2021) Toxotes jaculatrix GCA_017976295.1_fToxJac2.alt 2,393 594,660,453 2 26 26.52
29 banded killifish (hap2 2024) Fundulus diaphanus GCA_037038625.1_fFunDia1.hap2 196 1,329,922,595 373 6,322,172 50.37
30 barbel (alternate hap 2022) Barbus barbus GCA_936446605.1_fBarBab1.1_alternate_haplotype 8,034 1,319,370,800 1 200 52.21
31 Barn swallow (bHirRus1 v3 alternate hap 2021) Hirundo rustica GCA_015227815.3_bHirRus1.alt.v3 2,476 936,032,861 6 1,226 20.47
32 basking shark (sCetMax3.hap2.1 2024) Cetorhinus maximus GCA_964194165.1_sCetMax3.hap2.1 3,829 3,817,333,378 2,740 548,000 67.08
33 bats A.intermedius (hap2 2024) Artibeus intermedius GCA_038363225.1_mArtInt1.hap2 187 2,080,478,059 56 8,700 33.53
34 bird A.albertisi (hap2 2024) Aegotheles albertisi GCA_039906465.1_bAegAlb1.hap2 525 1,051,698,180 344 68,800 21.38
35 bird E.chinensis (hap1 2024) Excalfactoria chinensis GCA_039878515.1_bCotChi1.hap1 425 974,517,173 331 63,200 20.66
36 black and rufous elephant shrew (mRhyPet1hap2 2024) Rhynchocyon petersi GCA_043290065.1_mRhyPet1.hap2 314 5,331,151,070 723 144,425 64.54
37 black rhinoceros (alternate hap 2021) Diceros bicornis minor GCA_020826835.1_mDicBic1.pat.decon 1,199 3,044,793,931 178 903,692 40.41
38 black-capped chickadee (hap2 2023) Poecile atricapillus GCA_030490855.1_bPoeAtr1.hap2 157 987,998,379 240 590,213 23.49
39 black-headed gull (Kunming 2023) Chroicocephalus ridibundus GCA_030820635.1_KIZ_Lrid_1.0 297 1,243,762,172 149 14,900 23.13
40 black-legged kittiwake (bRisTri1.mat 2023) Rissa tridactyla GCA_028501385.1_bRisTri1.mat.cur.20221130 733 1,268,441,171 223 639,872 27.28
41 blackbelly eelpout (fLycPai1 haplotype 1 2023) Lycodopsis pacificus GCA_028021495.1_fLycPai1.hap1 461 661,271,547 373 74,600 30.40
42 blackcap Sylvia atricapilla GCA_009819715.1_bSylAtr1.alt 3,566 991,486,332 2 600 19.69
43 blacktail shiner (hap1 2024) Cyprinella venusta GCA_038021265.1_fCypVen1.hap1 673 918,162,819 709 131,200 46.85
44 Blainville's beaked whale (mMesDen1 alternate hap 2022) Mesoplodon densirostris GCA_025094165.1_mMesDen1_alternate_haplotype 5,197 2,376,281,363 1 33 41.16
45 Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020) Balaenoptera musculus GCA_008658375.2_mBalMus1.alt.v2 10,996 1,835,388,607 3 90 43.53
46 blue-and-yellow macaw (hap2 2023) Ara ararauna GCA_028858555.1_bAraAra1.hap2 274 1,302,242,811 130 1,106,509 28.73
47 blunt-snouted clingfish Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype 7,674 759,272,921 1 31 42.46
48 Boeseman's rainbowfish (fMelBoe1 alternate hap 2021) Melanotaenia boesemani GCA_017639755.1_fMelBoe1.alt 3,194 764,404,102 45 60,336 28.42
49 bonti-bonti (fTelBon1 alternate hap 2022) Telmatherina bonti GCA_933228925.1_fTelBon1.1_alternate_haplotype 4,619 781,234,592 0 0 38.85
50 bony fish P.klunzingeri (RE-2024bhap2 2024) Pempheris klunzingeri GCA_042242125.1_fPemKlu1.hap2 84 632,781,980 93 18,300 30.94
51 Bornean orangutan (v2 AG05252 alternate hap 2024) Pongo pygmaeus GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt 33 3,007,136,161 10 9,005,000 53.74
52 Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022) Thomomys bottae GCA_024803745.1_mThoBot1.0.p 2,792 2,845,630,888 106 10,600 57.15
53 Botta's pocket gopher (hap2 2023) Thomomys bottae GCA_031878665.1_mThoBot2.hap2 340 1,879,249,320 541 108,200 39.22
54 boutu (hap2 2024) Inia geoffrensis GCA_036417475.1_mIniGeo1.hap2 800 2,540,437,634 240 47,643 41.43
55 bowfin (hap2 2024) Amia calva GCA_036365475.1_fAmiCal2.hap2 297 958,875,937 80 16,000 36.24
56 Brauer's lanternfish (alternate hap 2023) Gymnoscopelus braueri GCA_963281105.1_fGymBra2.1_alternate_haplotype 10,794 1,279,160,753 5 1,000 46.07
57 Brazilian merganser (hap2 2024) Mergus octosetaceus GCA_036850655.1_bMerOct1.hap2 720 1,213,885,900 244 42,259 31.82
58 Brown anole (rAnoSag1 2024) Anolis sagrei GCA_037176775.1_rAnoSag1.pat 41 1,727,284,250 172 34,400 44.79
59 budgerigar (paternal) Melopsittacus undulatus GCA_012275275.1_bMelUnd1.pat 330 1,124,753,724 737 11,458,836 20.35
60 butterfish (fScaArg1 alternate hap 2021) Scatophagus argus GCA_020382915.1_fScaArg1.alt 1,592 563,244,951 4 52 21.38
61 California sea lion (mZalCal1 alternate hap 2020) Zalophus californianus GCA_009762295.2_mZalCal1.alt.v2 3,096 1,970,935,876 0 0 42.95
62 Canada lynx (LIC74 v2 alternate hap 2020) Lynx canadensis GCA_007474575.2_mLynCan4.alt.v2 15,041 1,416,309,019 5 743 43.55
63 Caribbean electric ray (hap1 2024) Narcine bancroftii GCA_036971445.1_sNarBan1.hap1 596 3,328,453,053 1,443 277,765 54.80
64 carmine bee-eater Merops nubicus GCA_009819585.1_bMerNub1.alt 3,296 1,122,486,764 0 0 21.54
65 channel bull blenny Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype 11,555 671,265,480 10 925 26.88
66 chevron butterflyfish (hap2 2024) Chaetodon trifascialis GCA_039877575.1_fChaTrf1.hap2 71 664,933,391 43 8,500 24.11
67 chicken (Cobb bGalGal5 alternate hap 2022) Gallus gallus GCA_027408205.1_bGalGal5.alt 2,259 911,865,540 4 92 21.83
68 chicken (Cobb bGalGal5 primary hap 2022) Gallus gallus GCA_027408225.1_bGalGal5.pri 252 1,109,044,877 460 2,157,079 24.72
69 chicken (Huxu 2023) Gallus gallus GCA_024206055.2_ASM2420605v2 41 1,100,928,095 14 5,572 23.58
70 chicken (matHap) Gallus gallus GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b 214 1,053,332,251 463 3,383,918 21.35
71 chicken (Ross bGalGal4 alternate hap 2022) Gallus gallus GCA_027408255.1_bGalGal4.alt 2,683 885,772,923 1 13 21.48
72 chicken (Ross bGalGal4 primary hap 2023) Gallus gallus GCA_027557775.1_bGalGal4.pri 246 1,094,281,734 566 2,821,884 24.04
73 chimpanzee (v2 AG18354 alternate hap 2024) Pan troglodytes GCA_028858805.2_NHGRI_mPanTro3-v2.0_alt 23 2,998,472,174 5 5,000,000 48.84
74 Chinese pangolin (hap2 mManPen7 2023) Manis pentadactyla GCA_030020945.1_mManPen7.hap2 700 2,869,287,698 190 14,873,332 39.52
75 chub mackerel (fScoJap1 alternate hap 2022) Scomber japonicus GCA_027409835.1_fScoJap1.alt 2,162 783,090,595 1 39 30.75
76 climbing perch Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype 2,641 539,091,056 36 2,107,526 21.00
77 clouded leopard (mNeoNeb1 alternate hap 2023) Neofelis nebulosa GCA_028018655.1_mNeoNeb1.alt 10,377 1,980,212,524 0 0 33.41
78 common blue-tongued skink (hap1 2024) Tiliqua scincoides GCA_035046495.1_rTilSci1.hap1 827 1,694,434,935 286 57,200 37.75
79 common bottlenose dolphin (paternal 2020) Tursiops truncatus GCA_011762515.1_mTurTru1.pat 1,166 2,378,995,196 868 45,794,633 45.09
80 common brushtail (alternate hap 2020) Trichosurus vulpecula GCA_011100645.1_mTriVul1.alt 12,133 2,591,928,569 313 24,688 40.15
81 common buzzard (bButBut1.hap2.1 2024) Buteo buteo GCA_964188375.1_bButBut1.hap2.1 458 1,330,554,072 471 94,200 25.08
82 common cuckoo (bCucCan1 alternate hap 2021) Cuculus canorus GCA_017976305.1_bCucCan1.alt 1,004 1,063,845,602 8 1,739 21.42
83 common frog (alternate hap 2021) Rana temporaria GCA_905171725.1_aRanTem1.1_alternate_haplotype 12,019 3,686,210,129 14 85,788 55.47
84 common moorhen (bGalChl1.hap2.1 2024) Gallinula chloropus GCA_964237395.1_bGalChl1.hap2.1 395 1,208,559,276 536 107,200 22.35
85 common myna (bArcTri1 alternate hap 2023) Acridotheres tristis GCA_027559525.1_bAcrTri1.alt 2,221 969,356,965 1 500 25.11
86 common pipistrelle (alternate hap 2020) Pipistrellus pipistrellus GCA_903992515.1_mPipPip1.1_alternate_haplotype 10,447 1,579,816,813 12 2,732 33.96
87 common pochard (bAytFer1.hap2.1 2024) Aythya ferina GCA_964211795.1_bAytFer1.hap2.1 362 1,103,588,439 405 81,000 25.38
88 common sole (alternate hap 2023) Solea solea GCA_958295035.1_fSolSol10.1_alternate_haplotype 1,318 627,818,797 0 0 31.70
89 common swift (bApuApu2 alternate hap 2021) Apus apus GCA_020740585.1_bApuApu2.alt.cur 1,697 1,019,504,970 5 105 20.89
90 common tern Sterna hirundo GCA_009819645.1_bSteHir1.alt 2,235 1,175,438,911 0 0 20.72
91 common toad (alternate hap 2021) Bufo bufo GCA_905171715.1_aBufBuf1.1_alternate_haplotype 24,195 3,744,894,388 156 491,279 61.49
92 common vampire bat (HL8 alternate hap 2022) Desmodus rotundus GCA_022682395.1_HLdesRot8B 430 1,976,149,209 580 232,283 31.24
93 common vampire bat (HL8 alternate hap 2022) Desmodus rotundus GCA_022682395.2_HLdesRot8B.1 429 1,969,917,660 576 230,283 31.12
94 common wall lizard (hap2 2024) Podarcis muralis GCA_964188365.1_rPodMur119.hap2.1 91 1,433,931,530 734 146,800 37.85
95 common whitefish (fCorLav1.hap2.1 2024) Coregonus lavaretus GCA_964263835.1_fCorLav1.hap2.1 3,980 2,352,365,286 4,689 937,818 61.14
96 common yellowthroat Geothlypis trichas GCA_009764545.1_bGeoTri1.alt 4,976 976,433,058 1 32 19.80
97 convict blenny (fPhoLeu1 alternate hap 2021) Pholidichthys leucotaenia GCA_020510965.1_fPhoLeu1.alt 21,417 1,865,716,438 144 143,564 67.06
98 copperband butterflyfish (fCheRos1 alternate hap 2021) Chelmon rostratus GCA_017976315.1_fCheRos1.alt 2,125 601,666,562 1 500 32.92
99 corroboree frog (hap1 2023) Pseudophryne corroboree GCA_028390055.1_aPseCor3.hap1 3,527 8,945,609,516 2,431 17,791,795 76.17
100 Cory's shearwater (bCalBor7.hap2.1 2024) Calonectris borealis GCA_964196065.1_bCalBor7.hap2.1 249 1,169,960,687 477 95,400 22.10
101 Cretan wall lizard (alternate hap 2023) Podarcis cretensis GCA_951804955.1_rPodCre2.1_alternate_haplotype 1,936 1,372,769,884 0 0 38.04
102 crucian carp (alternate hap 2023) Carassius carassius GCA_963082795.1_fCarCar2.1_alternate_haplotype 3,713 209,623,727 0 0 46.45
103 cuckoo roller (hap1 2023) Leptosomus discolor GCA_034619455.1_bLepDis1.hap1 335 1,327,905,210 290 58,000 24.00
104 cunner (fTauAds1 alternate hap 2021) Tautogolabrus adspersus GCA_020745675.1_fTauAds1.alt.cur 1,476 695,716,069 31 74,261 30.23
105 Dalmatian pelican (alternate hap 2023) Pelecanus crispus GCA_030449815.1_bPelCri1.alt 7,284 1,207,417,857 0 0 23.23
106 Daubenton's bat (alternate hap 2023) Myotis daubentonii GCA_963242275.1_mMyoDau2.1_alternate_haplotype 4,930 1,938,252,784 0 0 37.25
107 denticle herring Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype 1,972 457,704,509 4 226 27.74
108 diamondback terrapin (hap2 rMalTer1 2023) Malaclemys terrapin pileata GCA_027887205.1_rMalTer1.hap2 59 2,212,837,039 127 498,579 46.36
109 Domestic goose (bAnsAns1.hap2.1 2024) Anser anser GCA_964211785.1_bAnsAns1.hap2.1 381 1,168,290,161 754 150,800 26.78
110 dorado (hap1 2023) Salminus brasiliensis GCA_030448965.1_fSalBra1.hap1 182 1,078,246,036 641 20,261,167 36.11
111 Downy woodpecker (bDryPub1 alternate hap 2020) Dryobates pubescens GCA_014839825.1_bDryPub1.alt 1,342 1,082,594,729 4 226 31.30
112 dugong (hap2 mDugDug1 2023) Dugong dugon GCA_030020955.1_mDugDug1.hap2 167 3,154,453,075 89 17,631 47.38
113 East African grey crowned-crane Balearica regulorum gibbericeps GCA_011004865.1_bBalReg1.alt 971 1,042,364,165 4 539 20.18
114 eastern narrow-mouthed toad (hap2 2023) Gastrophryne carolinensis GCA_027917415.1_aGasCar1.hap2 590 4,305,890,454 1,773 354,600 60.57
115 electric eel (fEleEle1 alternate hap 2020) Electrophorus electricus GCA_013347915.1_fEleEle1.alt 2,629 428,136,346 0 0 24.43
116 emu (hap2 2024) Dromaius novaehollandiae GCA_036417515.1_bDroNov1.hap2 238 1,359,162,908 101 20,200 26.97
117 epaulette shark (alternate hap sHemOce1 2021) Hemiscyllium ocellatum GCA_020745765.1_sHemOce1.mat.decon 4,000 4,149,461,884 3,552 83,364,248 44.34
118 ermine (alternate hap 2020) Mustela erminea GCA_009829165.1_mMusErm1.alt 3,327 1,640,216,494 0 0 40.61
119 Eurasian badger (2021) Meles meles GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated 726 2,692,729,365 27 13,500 37.74
120 Eurasian badger (v3.2 2022) Meles meles GCA_922984935.2_mMelMel3.2_paternal_haplotype 538 2,738,694,574 101 23,800 38.09
121 Eurasian collared-dove (bStrDea1.hap2.1 2024) Streptopelia decaocto GCA_964273585.1_bStrDea1.hap2.1 584 1,200,501,445 683 136,600 25.49
122 Eurasian curlew (hap2 2024) Numenius arquata GCA_964059295.1_bNumArq3.hap2.1 811 1,198,356,613 693 138,600 24.54
123 Eurasian minnow (alternate hap 2023) Phoxinus phoxinus GCA_949152275.1_fPhoPho1.1_alternate_haplotype 4,941 925,610,136 8 1,600 44.35
124 Eurasian nightjar (alternate hap 2021) Caprimulgus europaeus GCA_907165095.1_bCapEur3.1_alternate_haplotype 2,502 1,051,868,380 25 3,300 21.18
125 Eurasian red squirrel (alternate hap 2019) Sciurus vulgaris GCA_902685485.1_mSciVul1.1_alternate_haplotype 10,655 1,366,022,868 2 71 35.43
126 Eurasian river otter (alternate hap 2019) Lutra lutra GCA_902653095.1_mLutLut1.1_alternate_haplotype 8,506 1,081,484,062 0 0 42.29
127 Eurasian water vole (alternate hap 2020) Arvicola amphibius GCA_903992525.1_mArvAmp1.1_alternate_haplotype 16,368 1,764,008,884 105 7,311 31.38
128 European chub (alternate hap 2023) Squalius cephalus GCA_949319155.1_fSquCep2.1_alternate_haplotype 7,425 979,250,430 12 2,400 48.14
129 European flounder (alternate hap 2023) Platichthys flesus GCA_949316195.1_fPlaFle2.1_alternate_haplotype 1,915 587,918,088 0 0 26.42
130 European leaf-toed gecko (hap2 2023) Euleptes europaea GCA_029931755.1_rEulEur1.hap2 381 1,775,520,415 177 5,646,691 39.56
131 European mink (alternate hap 2023) Mustela lutreola GCA_030435785.1_mMusLut2.alt 12,043 1,786,977,177 0 0 34.22
132 European mole (hap2 2024) Talpa europaea GCA_964194205.1_mTalEur1.hap2.1 356 2,056,471,431 1,040 208,000 33.58
133 European plaice (alternate hap 2022) Pleuronectes platessa GCA_947347695.1_fPlePla1.1_alternate_haplotype 3,219 613,421,917 3 600 28.01
134 European pond turtle (hap2 rEmyOrb1 2023) Emys orbicularis GCA_028017845.1_rEmyOrb1.hap2 156 2,327,425,914 130 5,287,839 35.51
135 European robin (alternate hap 2021) Erithacus rubecula GCA_903797565.2_bEriRub2.2_alternate_haplotype 3,668 912,720,829 18 4,600 19.76
136 European shag (alternate hap 2023) Phalacrocorax aristotelis GCA_949628205.1_bGulAri2.1_alternate_haplotype 9,751 1,080,507,657 1 17 21.58
137 European shrew (alternate hap 2023) Sorex araneus GCA_027595995.1_mSorAra2.alt 5,699 2,319,662,114 0 0 41.95
138 European snow vole (alternate hap 2023) Chionomys nivalis GCA_950005115.1_mChiNiv1.1_alternate_haplotype 4,255 2,022,897,225 1 33 33.35
139 European starfish Asterias rubens GCA_902459445.1_eAstRub1.2_alternate_haplotype 3,969 390,768,305 1 33 37.21
140 European turtle dove (v1.2 alternate hap 2021) Streptopelia turtur GCA_901699165.2_bStrTur1.2_alternate_haplotype 3,334 1,035,330,184 0 0 20.26
141 European woodmouse (alternate hap 2022) Apodemus sylvaticus GCA_947179525.1_mApoSyl1.1_alternate_haplotype 10,861 2,392,986,241 2 34 39.68
142 Eurpoean golden plover (bPluApr1 alternate hap 2021) Pluvialis apricaria GCA_017639475.1_bPluApr1.alt 1,147 1,085,787,090 5 552 20.74
143 false killer whale (hap2 2024) Pseudorca crassidens GCA_039906525.1_mPseCra1.hap2 416 2,678,530,964 133 24,510,583 44.18
144 Filfola wall lizard (rPodFil1.hap2.1 2024) Podarcis filfolensis GCA_964270875.1_rPodFil1.hap2.1 142 1,404,018,672 795 159,030 36.85
145 fire-bellied toad (aBomBom1 alternate hap 2023) Bombina bombina GCA_027579415.1_aBomBom1.alt 13,751 1,936,746,371 0 0 57.30
146 Fleay's barred frog (hap2 2024) Mixophyes fleayi GCA_038048865.1_aMixFle1.hap2 914 2,876,209,288 1,383 3,308,527 44.69
147 flier cichlid Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h 9,292 1,034,011,644 13 209,959 30.50
148 Florida worm lizard (hap1 rRhiFlo1 2023) Rhineura floridana GCA_030035715.1_rRhiFlo1.hap1 623 2,321,796,813 213 3,744,152 45.22
149 freshwater garfish (fXenCan1 alternate hap 2020) Xenentodon cancila GCA_014839645.1_fXenCan1.alt 5,169 658,557,970 2 1,000 26.36
150 Gaboon caecilian Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype 9,650 3,271,590,920 1 30 52.45
151 garden warbler (bSylBor1 alternate hap 2020) Sylvia borin GCA_014839765.1_bSylBor1.alt 775 1,032,649,170 0 0 19.91
152 Gharial (hap1 2023) Gavialis gangeticus GCA_030020385.1_rGavGan2.hap1 298 2,339,480,201 61 1,123,919 33.04
153 giant manta (sMobBir1 2023) Mobula birostris GCA_030035685.1_sMobBir1.hap2 1,558 3,634,101,053 1,742 54,983,815 51.68
154 gilthead seabream Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype 7,239 668,417,842 2 532 24.38
155 golden eagle (v1.4 alternate hap 2021) Aquila chrysaetos chrysaetos GCA_902153765.2_bAquChr1.4_alternate_haplotype 3,855 792,810,001 2 57 18.35
156 Goodes thornscrub tortoise Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt 8,736 1,961,129,424 0 0 33.34
157 Grand Cayman blue iguana (hap2 2023) Cyclura pinguis GCA_030412085.1_rCycPin1.hap2 33 1,955,392,031 19 19,385,908 32.31
158 gray short-tailed opossum (mMonDom1 alternate hap 2023) Monodelphis domestica GCA_027917375.1_mMonDom1.alt 8,062 2,616,995,731 24 91,053 43.40
159 gray squirrel (alternate hap 2019) Sciurus carolinensis GCA_902685475.1_mSciCar1.1_alternate_haplotype 9,508 2,057,949,030 2 530 35.01
160 gray wolf (alternate hap 2021) Canis lupus GCA_905319845.1_mCanLor1.1_alternate_haplotype 5,536 1,446,594,657 1 500 32.70
161 great fruit-eating bat (mArtLit1hap2 2024) Artibeus lituratus GCA_038363175.2_mArtLit1.hap2 312 2,096,453,601 54 9,100 33.94
162 great potoo (bNycGra1 alternate hap 2020) Nyctibius grandis GCA_013368595.1_bNycGra1.alt 1,395 1,041,284,291 14 2,599 22.77
163 great white shark (alternate hap 2021) Carcharodon carcharias GCA_017639455.1_sCarCar2.alt 39 6,205,005 28 1,535 60.53
164 greater argentine (alternate hap 2023) Argentina silus GCA_951799415.1_fArgSil1.1_alternate_haplotype 4,805 550,403,860 0 0 35.98
165 greater horseshoe bat (MPI-CBG alternate hap 2019) Rhinolophus ferrumequinum GCA_004115295.1_mRhiFer1_v1.h 13,424 1,514,615,512 2 1,000 34.47
166 greater pipefish Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype 1,848 234,858,432 2 600 23.32
167 greater pipefish (v2 2023 genbank) Syngnathus acus GCA_948146105.1_fSynAcu2.1 251 359,216,277 95 19,000 34.10
168 greater pipefish (v2 alternate haplotype 2023) Syngnathus acus GCA_948146095.1_fSynAcu2.1_alternate_haplotype 4,533 334,243,819 0 0 29.10
169 greater sand-eel (alternate hap 2023) Hyperoplus immaculatus GCA_949358355.1_fHypImm3.1_alternate_haplotype 4,952 763,769,615 0 0 38.84
170 green sea turtle (v2 alternate hap 2021) Chelonia mydas GCA_015220195.2_rCheMyd1.alt.v2 6,737 1,896,142,417 60 854,042 44.96
171 grey whale (mEscRob2 alternate hap 2023) Eschrichtius robustus GCA_028021475.1_mEscRob2.alt 14,442 2,787,390,652 0 0 45.70
172 gudgeon (alternate hap 2023) Gobio gobio GCA_949357705.1_fGobGob1.1_alternate_haplotype 7,245 1,349,092,698 8 1,600 67.88
173 gyrfalcon (bFalRus1 alternate hap 2020) Falco rusticolus GCA_015220155.1_bFalRus1.alt 8,370 516,243,243 0 0 16.87
174 Harpy eagle (bHarHar1 alternate hap 2022) Harpia harpyja GCA_026419925.1_bHarHar1 5,968 1,185,324,778 1 500 25.31
175 Hawaiian crow (bCorHaw1 alternate hap 2021) Corvus hawaiiensis GCA_020740675.1_bCorHaw1.alt.cur 2,762 628,844,469 0 0 20.95
176 hazel dormouse (alternate hap 2023) Muscardinus avellanarius GCA_963383665.1_mMusAve1.1_alternate_haplotype 31,856 1,187,222,402 0 0 41.89
177 hemichordates Saccoglossus (HW-2024a hap2 2024) Saccoglossus sp. HW-2024a GCA_040954595.1_ASM4095459v1 56 322,493,648 254 127,000 28.78
178 hippopotamus (mHipAmp2 hap1 2023) Hippopotamus amphibius kiboko GCA_030028035.1_mHipAmp2.hap1 545 2,533,318,371 83 16,600 35.57
179 hoatzin (hap2 2023) Opisthocomus hoazin GCA_030867165.1_bOpiHoa1.hap2 323 1,355,639,139 212 42,400 31.88
180 honeycomb rockfish (fSebUmb1 alternate hap 2020) Sebastes umbrosus GCA_015220095.1_fSebUmb1.alt 2,131 765,970,641 21 855 37.65
181 horn shark (hap1 2024) Heterodontus francisci GCA_036365525.1_sHetFra1.hap1 2,307 6,013,065,386 2,781 28,369,521 6.74
182 horse (maternal 2024) Equus caballus GCA_036418255.1_mEquCab1.mat 821 2,331,848,197 210 42,000 34.70
183 hourglass treefrog (maternal 2023) Dendropsophus ebraccatus GCA_027789725.1_aDenEbr1.mat 2,570 2,352,821,159 788 113,357,492 48.50
184 house finch (bHaeMex1 alternate hap 2022) Haemorhous mexicanus GCA_027406555.1_bHaeMex1.alt 1,003 1,039,351,984 1 13 22.74
185 house mouse (alternate hap 2023) Mus musculus GCA_949316305.1_mMusMuc1.1_alternate_haplotype 1,806 114,758,919 0 0 72.25
186 house sparrow (hap2 2024) Passer domesticus GCA_036417895.1_bPasDom1.hap2 482 1,260,479,385 182 36,400 31.98
187 human (mHomSap3 WGS:JACSEX01 2021) Homo sapiens GCA_016695395.2_mHomSap3.mat 950 2,902,214,236 1,217 10,376,848 52.22
188 human (WGS:JACSEW01 2021 alternate hap) Homo sapiens GCA_016700455.2_mHomSap3.pat 994 2,744,463,177 1,172 10,968,304 51.25
189 Humboldt's penguin (bSphHub1 alternate hap 2022) Spheniscus humboldti GCA_027474345.1_bSphHub1.alt 4,342 1,159,977,626 1 77 24.68
190 hybrid cattle (Angus x Brahman F1 Angus haplotype 2018) Bos indicus x Bos taurus GCA_003369685.2_UOA_Angus_1 1,435 2,580,764,822 277 6,480,811 47.42
191 Indian glassy fish Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype 2,242 486,545,135 230 2,056,711 24.11
192 Indo-Pacific tarpon (alternate hap 2020) Megalops cyprinoides GCA_013368575.1_fMegCyp1.alt 4,333 920,469,332 3 300 21.53
193 Italian wall lizard (rPodSic1.hap2.1 2024) Podarcis siculus GCA_964188395.1_rPodSic1.hap2.1 152 1,455,930,776 690 138,015 38.73
194 jewelled blenny Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype 4,516 894,675,777 9 3,272,521 28.60
195 John dory (alternate hap 2023) Zeus faber GCA_960530785.1_fZeuFab8.1_alternate_haplotype 5,370 809,816,570 0 0 40.06
196 kagu (bRhyJub1 alternate hap 2023) Rhynochetos jubatus GCA_027595965.1_bRhyJub1.alt 2,818 791,426,973 1 32 25.70
197 kakapo (Jane alternate hap 2019) Strigops habroptila GCA_004011185.1_bStrHab1_v1.h 3,728 285,706,558 11 5,465 18.11
198 killer whale (alternate hap 2022) Orcinus orca GCA_937001455.1_mOrcOrc1.1_alternate_haplotype 12,410 1,882,900,201 0 0 41.12
199 king vulture (hap2 2024) Sarcoramphus papa GCA_037950955.1_bSarPap1.hap2 140 1,469,241,744 128 25,600 35.57
200 Korean giant-fin mudskipper Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt 2,799 698,977,026 1 500 39.04
201 lammergeier (bGypBar2 alternate hap 2023) Gypaetus barbatus GCA_028017155.1_bGypBar2.alt 2,892 979,058,826 0 0 23.84
202 lance-tailed manakin Chiroxiphia lanceolata GCA_009829205.1_bChiLan1.alt 4,269 1,054,616,617 0 0 19.51
203 lanner falcon (bFalBia1 alternate hap 2022) Falco biarmicus GCA_023634305.1_bFalBia1.alt 3,090 1,202,443,328 0 0 22.09
204 large-eye snaggletooth (alternate hap 2023) Borostomias antarcticus GCA_949987545.1_fBorAnt1.1_alternate_haplotype 5,761 788,134,964 0 0 42.72
205 largescale foureyes (fAnaAna1 alternate hap 2020) Anableps anableps GCA_014839705.1_fAnaAna1.alt 5,088 445,542,990 0 0 27.42
206 Lataste's viper (alternate hap 2022) Vipera latastei GCA_024294605.1_rVipLat1.alt 6,799 1,549,880,332 1 500 44.01
207 leatherback sea turtle (v2 alternate hap 2020) Dermochelys coriacea GCA_009762595.2_rDerCor1.alt.v2 8,999 1,444,786,651 7 352 47.10
208 lesser Egyptian jerboa (alternate hap 2021) Jaculus jaculus GCA_020740715.1_mJacJac1.pat.decon 508 2,595,216,862 2,875 188,089,954 40.53
209 lesser horseshoe bat (hap2 2024) Rhinolophus hipposideros GCA_964194215.1_mRhiHip2.hap2.1 1,079 2,240,459,116 1,648 329,600 34.27
210 lesser kestrel (alternate hap 2021) Falco naumanni GCA_017639645.1_bFalNau1.mat 551 1,156,765,323 258 11,969,465 19.17
211 lesser noctule (mNycLei1.hap2.1 2024) Nyctalus leisleri GCA_964264895.1_mNycLei1.hap2.1 1,335 2,011,002,017 1,563 312,615 40.03
212 lesser rhea (bPtePen1 alternate hap 2023) Rhea pennata GCA_028389885.1_bPtePen1.alt 910 983,620,806 0 0 21.55
213 lesser salmon catfish (fNeoGra1 alternate hap 2023) Neoarius graeffei GCA_027579805.1_fNeoGra1.alt 6,590 2,195,086,485 3 67 62.71
214 lesser sand-eel (alternate hap 2023) Ammodytes marinus GCA_950004245.1_fAmmMar1.1_alternate_haplotype 3,619 756,335,084 1 200 38.09
215 limp eelpout (alternate hap 2023) Melanostigma gelatinosum GCA_949748265.1_fMelGel1.1_alternate_haplotype 2,698 629,798,166 2 400 30.28
216 live sharksucker Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype 1,405 528,272,450 19 224,651 22.09
217 lizards P.bocagei (rPodBoc1.hap2.1 2024) Podarcis bocagei GCA_964188325.1_rPodBoc1.hap2.1 627 1,473,581,329 817 163,400 39.42
218 lizards P.erhardii (rPodErh1.hap2.1 2024) Podarcis erhardii GCA_964251985.1_rPodErh1.hap2.1 647 1,477,748,000 811 162,200 37.96
219 lizards P.melisellensis (rPodMel1.hap2.1 2024) Podarcis melisellensis GCA_964234825.1_rPodMel1.hap2.1 200 1,437,044,901 754 150,800 37.90
220 lizards P.pityusensis (rPodPit1.hap2.2 2024) Podarcis pityusensis GCA_964106635.2_rPodPit1.hap2.2 183 1,417,079,496 1,365 273,000 37.15
221 long-tailed hermit (PSU5 alternate hap 2022) Phaethornis superciliosus GCA_023637925.1_DD_ASM_B1a 230 1,014,956,223 0 0 20.48
222 longspined bullhead (fTauBub2.1 alternate hap 2021) Taurulus bubalis GCA_910589325.1_fTauBub2.1_alternate_haplotype 1,778 614,755,631 0 0 28.10
223 lumpfish Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt 1,866 480,967,379 0 0 28.18
224 lumpfish (primary hap v2.1 2023 genbank) Cyclopterus lumpus GCA_963457625.1_fCycLum2.1 232 586,296,809 954 190,814 30.29
225 Macqueen's bustard (paternal 2024) Chlamydotis macqueenii GCA_036418225.1_bChlMac1.pat 343 1,106,587,813 84 16,800 25.27
226 maguari stork (bCicMag1 alternate hap 2021) Ciconia maguari GCA_017639665.1_bCicMag1.alt 4,278 967,599,765 5 726 19.61
227 mallard (hap2 2024) Anas platyrhynchos GCA_964188335.1_bAnaPla2.hap2.1 487 1,136,573,142 485 97,000 26.25
228 marbled rockcod (alternate hap 2023) Notothenia rossii GCA_949606865.1_fNotRos5.1_alternate_haplotype 8,737 1,005,523,998 0 0 45.04
229 Mauritius kestrel (alternate hap 2023) Falco punctatus GCA_963210275.1_bFalPun1.1_alternate_haplotype 2,259 390,584,314 0 0 22.52
230 Mauritius parakeet (alternate hap 2023) Psittacula echo GCA_963243765.1_bPsiEch3.1_alternate_haplotype 2,130 791,895,490 0 0 24.89
231 meadow viper (alternate hap 2022) Vipera ursinii GCA_947247025.1_rVipUrs1.1_alternate_haplotype 9,575 1,180,062,022 12 2,400 41.76
232 meadow vole (hap2 2024) Microtus pennsylvanicus GCA_037039175.1_mMicPen1.hap2 143 2,156,400,253 53 9,700 32.15
233 Merriam's long-tongued bat (hap2 2024) Glossophaga mutica GCA_039656995.1_mGloMut1.hap2 71 2,156,622,230 45 8,200 32.89
234 Mexican burrowing toad (hap2 2024) Rhinophrynus dorsalis GCA_037306015.1_aRhiDor1.hap2 656 4,535,323,468 2,009 401,800 53.02
235 Mexican gopher tortoise (WGS:JAMKFD01 2022) Gopherus flavomarginatus GCA_025201965.1_rGopFla2.pat.asm 2,992 2,584,697,711 1,790 116,054,540 34.08
236 milkfish Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype 1,937 637,484,823 3 700 26.50
237 minke whale (alternate hap 2023) Balaenoptera acutorostrata GCA_950005055.1_mBalAcu1.1_alternate_haplotype 21,271 2,590,401,380 1 27 41.31
238 monito del monte (mDroGli1 alternate hap 2021) Dromiciops gliroides GCA_019395325.1_mDroGli1.alt 9,926 2,818,512,018 33 1,259 42.26
239 mute swan (bCygOlo1 v2 alternate hap 2021) Cygnus olor GCA_009769485.2_bCygOlo1.alt.v2 5,626 814,594,871 14 918 20.18
240 Natterer's bat (mMyoNat1.hap2.1 2024) Myotis nattereri GCA_964212025.1_mMyoNat1.hap2.1 319 1,930,603,033 1,387 277,415 36.68
241 Nelson's sparrow (bAmmNel1 alternate hap 2023) Ammospiza nelsoni GCA_027579665.1_bAmmNel1.alt 2,834 1,033,298,713 0 0 26.31
242 New Caledonian crow Corvus moneduloides GCA_009651025.1_bCorMon1.alt 894 905,198,257 0 0 19.52
243 New Zealand spotty Notolabrus celidotus GCA_009762545.1_fNotCel1.alt 3,286 770,553,912 0 0 33.61
244 Nicobar pigeon (hap2 2024) Caloenas nicobarica GCA_036010745.1_bCalNic1.hap2 226 1,197,404,482 118 20,600 23.25
245 nine-banded armadillo (mDasNov1 hap1 2023) Dasypus novemcinctus GCA_030445055.1_mDasNov1.hap1 594 3,335,791,168 845 24,283,244 42.43
246 nine-banded armadillo (mDasNov1 hap1 2023) Dasypus novemcinctus GCA_030445055.2_mDasNov1.1.hap1 588 3,296,222,425 823 24,008,378 42.23
247 ninespine stickleback (alternate hap 2023) Pungitius pungitius GCA_949316245.1_fPunPun2.1_alternate_haplotype 1,934 413,337,341 0 0 27.13
248 North American porcupine (mEreDor1 alternate hap 2023) Erethizon dorsatum GCA_028500835.1_mEreDor1.alt 5,050 1,937,137,571 1 37 40.58
249 North Atlantic right whale (hap1 2023) Eubalaena glacialis GCA_028571275.1_mEubGla1.hap1 947 2,615,329,254 385 4,162,427 43.42
250 North Atlantic right whale (mEubGla1 hap2 2023) Eubalaena glacialis GCA_028564815.1_mEubGla1.hap2 779 2,832,194,838 363 4,859,315 44.01
251 North Island brown kiwi (hap2 2024) Apteryx mantelli GCA_036417975.1_bAptMan1.hap2 349 1,593,539,360 155 31,000 30.47
252 northern bat (alternate hap 2023) Eptesicus nilssonii GCA_951640545.1_mEptNil1.1_alternate_haplotype 4,896 1,900,360,802 3 600 36.13
253 northern black mastiff bat (mMolNig1hap2 2024) Molossus nigricans GCA_039880925.1_mMolNig1.hap2 282 2,394,902,263 80 11,800 40.28
254 northern bottlenose whale (alternate hap 2023) Hyperoodon ampullatus GCA_949752845.1_mHypAmp2.1_alternate_haplotype 23,401 2,477,781,444 0 0 41.73
255 northern gannet (hap1 2023) Morus bassanus GCA_031468805.1_bMorBas2.hap1 829 1,381,630,140 263 52,600 27.30
256 northern goshawk (bAccGen1 v1 alternate hap 2022) Accipiter gentilis GCA_929447715.1_bAccGen1.1_alternate_haplotype 4,484 1,112,029,929 2 50 24.06
257 northern pike Esox lucius GCA_011004835.1_fEsoLuc1.alt 3,813 622,571,242 11 417,274 31.83
258 Norway rat BN7 haplotype Rattus norvegicus GCA_015244455.1_mRatBN7.1_alternate_haplotype 3,156 286,931,382 6 327 50.93
259 olive python (hap2 2023) Liasis olivaceus GCA_030867085.1_rLiaOli1.hap2 65 1,478,263,624 93 5,065,312 29.98
260 orange-tipped seq squirt (alternate hap 2023) Corella eumyota GCA_963082865.1_kaCorEumy4.1_alternate_haplotype 70 2,977,316 0 0 43.03
261 orbiculate cardinalfish Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype 6,896 1,135,435,641 142 630,303 45.58
262 painted frog (alternate hap 2022) Discoglossus pictus GCA_027410455.1_aDisPic1.alt 4,005 1,937,156,624 76 1,862 53.01
263 pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020) Phyllostomus discolor GCA_004115245.2_mPhyDis1.alti.v3 10,857 2,051,656,167 38 18,868 29.67
264 Papuan ground boa (hap1 2024) Candoia aspera GCA_035125265.1_rCanAsp1.hap1 180 1,529,331,567 99 19,800 33.58
265 parallel lanternfish (alternate hap 2024) Protomyctophum parallelum GCA_964188415.1_fProPar1.1_alternate_haplotype 23 1,013,731,500 4,955 991,000 46.52
266 peladilla (fAplTae1 alternate hap 2021) Aplochiton taeniatus GCA_017639685.1_fAplTae1.alt 5,690 560,414,924 11 839 28.85
267 peregrine falcon (bFalPer1 alternate hap 2022) Falco peregrinus GCA_023634185.1_bFalPer1.alt 2,745 1,175,509,191 0 0 21.18
268 Peter's clawed frog (aXenPet1 2024) Xenopus petersii GCA_038501915.1_aXenPet1.maternal.cur 1,183 2,613,116,200 1,072 214,400 44.51
269 Philippine flying lemur (mCynVol1 alternate hap 2022) Cynocephalus volans GCA_027409165.1_mCynVol1.alt 1,750 2,453,279,509 0 0 39.54
270 pig-tailed macaque (mMacNem1hap2 2024) Macaca nemestrina GCA_043161795.1_mMacNem.hap2 233 2,963,967,802 232 40,400 53.07
271 pinecone soldierfish Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype 2,193 819,084,930 6 688 27.94
272 pink pigeon (alternate hap 2023) Nesoenas mayeri GCA_963082445.1_bNesMay2.1_alternate_haplotype 1,277 867,500,292 0 0 21.65
273 plains spadefoot toad (alternate hap 2022) Spea bombifrons GCA_027382365.2_aSpeBom1.2.alt 1,516 785,569,511 0 0 34.39
274 platypus (alternate hap Pmale09 2020) Ornithorhynchus anatinus GCA_004115175.2_mOrnAna1.alt.v3 5,843 1,575,252,831 25 5,525 51.65
275 plumbeous ibis (bTheCae1 alternate hap 2021) Theristicus caerulescens GCA_020745805.1_bTheCae1.alt.cur 749 1,041,135,290 4 95 19.61
276 pollack (alternate hap 2023) Pollachius pollachius GCA_949987605.1_fPolPol2.1_alternate_haplotype 4,970 591,893,695 0 0 33.27
277 prehistoric monster fish Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype 19,579 1,767,810,094 8 248 58.58
278 proboscis bat (hap2 2024) Rhynchonycteris naso GCA_037038555.1_mRhyNas2.hap2 38 2,296,372,838 39 7,000 40.66
279 Puerto Rican coqui (hap2 2024) Eleutherodactylus coqui GCA_035609135.1_aEleCoq1.hap2 827 3,362,534,901 685 137,000 53.92
280 pygmy chimpanzee (paternal 2024) Pan paniscus GCA_028858825.2_NHGRI_mPanPan1-v2.0_pat 38 3,076,853,215 7 5,070,000 50.16
281 pygmy sperm whale (mKogBre1 haplotype 2 2022) Kogia breviceps GCA_026419985.1_mKogBre1_haplotype_2 391 2,613,416,393 138 319,582 41.60
282 razorbill Alca torda GCA_008658355.1_bAlcTor1_alternate 3,309 1,220,378,950 0 0 20.28
283 red deer (alternate hap 2021) Cervus elaphus GCA_910593805.1_mCerEla1.1_alternate_haplotype 4,021 2,903,978,491 22 11,000 50.27
284 red fox (hap2 2024) Vulpes vulpes GCA_964106925.2_mVulVul1.hap2.2 350 2,398,532,178 1,819 363,800 33.10
285 red-bellied piranha (fPygNat1 alternate hap 2020) Pygocentrus nattereri GCA_015220065.1_fPygNat1.alt 1,751 289,313,524 0 0 49.72
286 red-crested turaco Tauraco erythrolophus GCA_009764505.1_bTauEry1.alt 3,476 1,084,112,861 0 0 21.89
287 Red-fronted tinkerbird (bPogPus1 alternate hap 2020) Pogoniulus pusillus GCA_015220175.1_bPogPus1.alt 2,748 1,101,771,457 12 2,226 34.66
288 red-legged seriema Cariama cristata GCA_009819485.1_bCarCri1.alt 2,840 930,239,327 1 98 18.92
289 red-throated loon (hap1 2023) Gavia stellata GCA_030936125.1_bGavSte3.hap1 2,965 1,403,461,371 260 52,000 27.37
290 red-throated loon (hap2 2023 genbank) Gavia stellata GCA_030936135.1_bGavSte3.hap2 1,186 1,321,287,916 249 49,800 23.65
291 reedfish (v3 alternate hap 2021) Erpetoichthys calabaricus GCA_900700845.3_fErpCal1.3_alternate_haplotype 17,082 3,014,944,822 17 314,459 46.95
292 Rice's whale (hap1 2023) Balaenoptera ricei GCA_028017805.1_mBalRic1.hap1 1,039 2,844,045,133 131 62,437,235 42.12
293 Rice's whale (hap2 2023 genbank) Balaenoptera ricei GCA_028023285.1_mBalRic1.hap2 774 2,678,442,663 334 2,621,494 41.09
294 rifleman (bAcaChl1 alternate hap 2021) Acanthisitta chloris GCA_016880875.1_bAcaChl1.alt 2,879 827,793,803 20 1,043 19.12
295 Riggenbach's reed frog (aHypRig1 alternate hap 2024) Hyperolius riggenbachi GCA_040937895.1_aHypRig1.alt 14,077 9,708,340,052 19 3,635 3.56
296 ring-tailed lemur (mLemCat1 alternate hap 2021) Lemur catta GCA_020740595.1_mLemCat1.alt 312 2,266,570,666 1 500 37.07
297 roach minnow (alternate hap 2023) Rutilus rutilus GCA_951802655.1_fRutRut2.1_alternate_haplotype 4,606 1,042,711,183 6 1,200 48.42
298 rock gunnel (alternate hap 2021) Pholis gunnellus GCA_910591705.2_fPhoGun1.2_alternate_haplotype 2,165 590,303,236 1 500 25.85
299 rock pigeon (racing homer bColLiv1 2024) Columba livia GCA_036010775.2_bColLiv1.mat.v2 650 1,181,506,259 192 37,200 28.60
300 rock pigeon (racing homer maternal 2024) Columba livia GCA_036010775.1_bColLiv1.mat 650 1,181,506,259 192 37,200 28.60
301 rock ptarmigan (bLagMut1 alternate hap 2022) Lagopus muta GCA_023344045.1_bLagMut1_alternate 3,212 923,340,374 13 1,320 20.42
302 Rosablanca catfish (hap2 2023) Trichomycterus rosablanca GCA_030015355.1_fTriRos1.hap2 302 996,754,446 192 38,400 48.41
303 royal ground snake (hap2 2023) Erythrolamprus reginae GCA_031021085.1_rEryReg1.hap2 1,128 2,038,227,610 0 0 53.01
304 royal ground snake (hap3 2023) Erythrolamprus reginae GCA_031001685.1_rEryReg1.hap3 3,543 2,090,234,102 0 0 57.37
305 rudd (Europe DD20220513a primary hap 2022) Scardinius erythrophthalmus GCA_024453875.1_ASM2445387v1 110 1,135,838,337 418 88,160 49.98
306 rufous frog (hap1 2023) Leptodactylus fuscus GCA_031893025.1_aLepFus1.hap1 2,266 2,307,711,212 973 11,371,605 55.98
307 saddleback dolphin (alternate hap 2023) Delphinus delphis GCA_949987525.1_mDelDel1.1_alternate_haplotype 7,426 2,440,532,866 1 31 40.32
308 Saker falcon (bFalChe1 alternate hap 2022) Falco cherrug GCA_023634115.1_bFalChe1.alt 4,160 1,210,282,093 2 51 23.62
309 saltmarsh sparrow (bAmmCau1 alternate hap 2023) Ammospiza caudacuta GCA_027887135.1_bAmmCau1.alt 3,054 1,166,743,317 0 0 26.27
310 San Diegan legless lizard (HBS135921 alternate hap 2023) Anniella stebbinsi GCA_029215795.1_rAnnSte1.0.hap2 91 1,891,076,299 31 3,100 39.31
311 sand lizard Lacerta agilis GCA_009819545.1_rLacAgi1.alt 12,660 1,429,379,209 2 120 34.27
312 Sardinian treefrog (hap2 2023) Hyla sarda GCA_029493135.1_aHylSar1.hap2 2,802 4,080,080,015 2,097 419,128 63.87
313 Schreibers' long-fingered bat (hap2 2024) Miniopterus schreibersii GCA_964145185.1_mMinSch1.hap2.1 168 1,693,881,420 1,137 227,400 29.33
314 sea lamprey Petromyzon marinus GCA_010993595.1_kPetMar1.alt 4,064 841,632,067 11 24,549 49.81
315 shanny (alternate hap 2023) Lipophrys pholis GCA_963383635.1_fLipPho2.1_alternate_haplotype 3,846 738,669,690 1 34 28.51
316 sharpnose sevengill shark (hap2 2024) Heptranchias perlo GCA_035084135.1_sHepPer1.hap2 1,194 3,059,754,027 1,695 339,000 55.71
317 siamang (Jambi alternate hap 2024) Symphalangus syndactylus GCA_028878085.3_NHGRI_mSymSyn1-v2.0_alt 40 3,097,367,794 3 2,150,000 55.60
318 siamang (v2 Jambi alternate hap 2024) Symphalangus syndactylus GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt 40 3,097,367,794 3 2,150,000 55.60
319 Siamese fighting fish (v5.4 alternate hap 2023) Betta splendens GCA_900651605.2_fBetSpl5.4_alternate_haplotype 3,764 441,035,931 108 2,919 23.26
320 Skyros wall lizard (rPodGai1.hap2.1 2024) Podarcis gaigeae GCA_964106785.1_rPodGai1.hap2.1 127 1,422,314,362 783 156,600 37.52
321 slow loris (mNycCou1 alternate hap 2022) Nycticebus coucang GCA_027406535.1_mNycCou1.alt 6,485 2,692,941,978 0 0 39.87
322 smaller spotted catshark (alternate hap 2021) Scyliorhinus canicula GCA_902713625.2_sScyCan1.2_alternate_haplotype 26,649 3,867,000,599 6 319 51.57
323 smalleye Pacific opah (hap1 2023) Lampris incognitus GCA_029633845.1_fLamInc1.hap1 1,059 1,477,069,270 3,120 623,912 53.60
324 smalltooth sawfish Pristis pectinata GCA_009764485.1_sPriPec2.alt 10,892 1,694,166,684 0 0 38.34
325 snake N.helvetica (rNatHel1.hap2.1 2024) Natrix helvetica GCA_964273795.1_rNatHel1.hap2.1 502 1,513,526,581 1,674 334,800 43.90
326 soprano pipistrelle (alternate hap 2023) Pipistrellus pygmaeus GCA_949987765.1_mPipPyg2.1_alternate_haplotype 2,716 1,764,844,953 1 17 36.36
327 South Island takahe (alternate hap 2021) Porphyrio hochstetteri GCA_020801775.1_bPorHoc1.pat.decon 178 1,245,128,614 238 10,404,950 24.85
328 southern bluefin tuna (alternate hap 2021) Thunnus maccoyii GCA_910596085.1_fThuMac1.1_alternate_haplotype 895 782,574,410 0 0 33.63
329 southern tamandua (mTamTet1 alternate hap 2022) Tamandua tetradactyla GCA_023853755.1_mTamTet1.alt 7,862 2,898,984,517 4 713 39.97
330 southern two-toed sloth (mChoDid1 alternate hap 2020) Choloepus didactylus GCA_015220265.1_mChoDid1.alt 11,980 3,180,649,806 70 76,707 40.66
331 Sowerby's beaked whale (hap2 2024) Mesoplodon bidens GCA_964148845.1_mMesBid2.hap2.1 1,152 2,732,770,104 974 194,800 43.69
332 speckled mousebird (bColStr4 hap2 2023) Colius striatus GCA_028858625.2_bColStr4.1.hap2 242 1,153,503,718 136 5,470,024 25.49
333 speckled mousebird (hap2 2023) Colius striatus GCA_028858625.1_bColStr4.hap2 243 1,242,527,572 151 5,489,805 25.54
334 spotted gar (fLepOcu1hap1 2024) Lepisosteus oculatus GCA_040954845.1_fLepOcu1.hap1 831 1,110,649,520 76 15,200 34.48
335 spotted ratfish (hap1 2024) Hydrolagus colliei GCA_035084065.1_sHydCol1.hap1 1,042 1,097,847,766 2,088 417,600 44.94
336 starry smooth-hound (sMusAst1.hap2.1 2024) Mustelus asterias GCA_964214025.1_sMusAst1.hap2.1 4,403 3,476,679,425 3,505 701,000 53.51
337 sterlet (paternal 2022) Acipenser ruthenus GCA_902713435.2_fAciRut3.2_paternal_haplotype 1,517 1,882,648,115 475 95,000 41.60
338 stone loach (alternate hap 2022) Barbatula barbatula GCA_947034905.1_fBarBar1.1_alternate_haplotype 2,237 571,749,702 0 0 38.06
339 striped catfish (fPanHyp1 alternate hap 2022) Pangasianodon hypophthalmus GCA_027382375.1_fPanHyp1.alt 3,274 738,869,872 1 45 37.85
340 striped dolphin (alternate hap 2023) Stenella coeruleoalba GCA_951394445.1_mSteCoe1.1_alternate_haplotype 3,464 2,485,529,352 0 0 40.98
341 Sumatran orangutan (v2 AG06213 alternate hap 2024) Pongo abelii GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt 48 3,000,996,708 10 7,515,000 53.59
342 Suruca trogon (bTroSur1 alternate hap 2021) Trogon surrucura GCA_020746095.1_bTroSur1.alt.cur 1,535 997,329,498 17 496 21.93
343 Suwannee snapping turtle (hap1 2023) Macrochelys suwanniensis GCA_033296515.1_rMacSuw1.hap1 366 2,132,261,265 290 58,000 33.43
344 Swainson's thrush (bCatUst1 v2 alternate hap 2020) Catharus ustulatus GCA_009819505.2_bCatUst1.alt.v2 3,601 1,128,658,440 13 343 22.74
345 swamp sparrow (bMelGeo1 alternate hap 2023) Melospiza georgiana GCA_028019105.1_bMelGeo1.alt 862 1,075,048,352 0 0 25.04
346 Swift parrot (hap2 2024) Lathamus discolor GCA_037157625.1_bLatDis1.hap2 413 1,123,412,812 122 2,852,181 26.31
347 tailed frog (A.truei hap2 2024) Ascaphus truei GCA_040206675.1_aAscTru1.hap2 2,779 3,660,446,095 6,023 1,204,703 55.25
348 tammar wallaby (mMacEug1 alternate hap 2023) Notamacropus eugenii GCA_028389975.1_mMacEug1.alt 14,283 1,837,738,679 2 62 38.42
349 tawny frogmouth (bPodStr1 alternate hap 2023) Podargus strigoides GCA_028020675.1_bPodStr1.alt 911 977,391,185 1 35 22.09
350 tawny owl (hap2 2023) Strix aluco GCA_031877785.1_bStrAlu1.hap2 184 1,219,048,950 206 1,471,991 24.84
351 thorny skate Amblyraja radiata GCA_010909745.1_sAmbRad1.alt 21,992 1,462,441,988 3 94 57.78
352 tiger shark (hap2 2023) Stegostoma tigrinum GCA_030684295.1_sSteTig4.hap2 933 3,603,936,669 1,203 12,512,178 59.53
353 tiny Cayenne caecilian Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype 23,870 3,698,322,623 1 31 52.19
354 torafugu Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype 2,012 350,016,965 38 625,268 20.31
355 tourmaline sunangel (hap2 2024) Heliangelus exortis GCA_036172335.1_bHelExo1.hap2 200 969,853,240 370 72,600 21.82
356 trahira (hap1 2023) Hoplias malabaricus GCA_029633855.1_fHopMal1.hap1 597 1,115,418,468 867 79,122,037 36.75
357 tufted duck Aythya fuligula GCA_009819845.1_bAytFul2.alt 780 1,013,629,683 1 100 21.73
358 Tungara frog (aEngPut4 2024) Engystomops pustulosus GCA_040894015.1_aEngPut4.paternal 819 2,081,032,022 507 101,225 52.62
359 tunicate S.clava (kaStyClav1.hap2.1 2024) Styela clava GCA_964204955.1_kaStyClav1.hap2.1 243 381,580,332 26 5,200 39.21
360 two-lined caecilian Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype 27,231 4,615,304,139 2 63 43.78
361 vaquita (alternate hap mPhoSin1 2019) Phocoena sinus GCA_008692045.1_mPhoSin1.alt 9,469 995,426,950 1 19 43.86
362 warty frogfish (fAntMac1 alternate hap 2020) Antennarius maculatus GCA_013347815.1_fAntMac1.alt 2,294 530,348,589 0 0 29.49
363 western capercaillie (alternate hap 2023) Tetrao urogallus GCA_951394355.1_bTetUro1.1_alternate_haplotype 5,463 853,758,599 0 0 20.30
364 western European hedgehog (alternate hap 2023) Erinaceus europaeus GCA_950295305.1_mEriEur2.1_alternate_haplotype 26,600 1,850,742,846 1 200 53.70
365 western lowland gorilla (paternal KB3781 2024) Gorilla gorilla gorilla GCA_028885475.2_NHGRI_mGorGor1-v2.0_pat 24 3,351,856,267 2 2,000,000 50.48
366 Western terrestrial garter snake Thamnophis elegans GCA_009769695.1_rThaEle1.alt 13,623 1,814,330,211 19 1,330,160 43.98
367 whiskered bat (hap2 2024) Myotis mystacinus GCA_964195625.1_mMyoMys1.hap2.1 327 1,943,289,057 1,414 282,815 36.81
368 whiskered treeswift (bHemCom1 alternate hap 2021) Hemiprocne comata GCA_020745695.1_bHemCom1.alt.cur 2,405 1,052,608,110 1 13 20.56
369 white-beaked dolphin (alternate hap 2023) Lagenorhynchus albirostris GCA_949774935.1_mLagAlb1.1_alternate_haplotype 25,619 2,036,251,322 0 0 38.99
370 white-crowned manakin (hap2 2024) Pseudopipra pipra GCA_036250135.1_bDixPip1.hap2 595 1,027,640,383 307 61,400 21.40
371 white-tailed eagle (bHalAlb1.1 alternate hap 2022) Haliaeetus albicilla GCA_947461935.1_bHalAlb1.1_alternate_haplotype 4,971 693,161,704 0 0 22.93
372 white-toothed pygmy shrew (mSunEtr1 alternate hap 2022) Suncus etruscus GCA_024140225.1_mSunEtr1.alt.cur 14,815 1,515,382,512 26 820 45.74
373 white-tufted-ear marmoset (maternal 2020) Callithrix jacchus GCA_011078405.1_mCalJac1.mat 216 2,811,151,840 1,068 11,863,565 49.86
374 whooping crane (paternal hap 2023) Grus americana GCA_028858595.1_bGruAme1.pat 395 1,200,805,165 586 5,991,895 20.22
375 yellow-bellied toad (2024) Bombina variegata GCA_964205305.1_aBomVar4.paternal.1 3,497 9,112,230,460 6,811 1,362,200 3.70
376 yellow-crowned parrot (bAmaOch1hap2 2024) Amazona ochrocephala GCA_039720425.1_bAmaOch1.hap2 2,468 1,356,986,306 138 25,900 37.29
377 yellow-legged gull (bLarMic1.1_alternate_haplotype 2024) Larus michahellis GCA_964199725.1_bLarMic1.1_alternate_haplotype 4,673 1,288,335,985 0 0 29.60
378 yellow-spotted hyrax (mHetBru1 alternate hap 2023) Heterohyrax brucei GCA_028571665.1_mHetBru1.alt 4,168 3,021,267,164 1 32 44.05
379 yellow-throated sandgrouse Pterocles gutturalis GCA_009769505.1_bPteGut1.alt 1,958 1,037,717,354 0 0 20.79
380 yellowfin seabream (v.2019 alternate hap 2020) Acanthopagrus latus GCA_904848175.1_fAcaLat1.1_alternate_haplotype 349 47,986,553 80 8,000 20.44
381 yellowfin tuna (alternate hap 2021) Thunnus albacares GCA_914744365.1_fThuAlb1.1_alternate_haplotype 640 786,643,039 0 0 28.56
382 zebra finch (alternate hap Blue55 v1 2020) Taeniopygia guttata GCA_009859025.1_bTaeGut2.p.v1.alt 4,677 947,919,714 16 113,756 19.27
383 zebra finch (Black17 v1.4 alternate hap 2021) Taeniopygia guttata GCA_003957525.2_bTaeGut1.4.alt 1,646 887,567,949 10 876 20.75
384 zebra finch (maternal) Taeniopygia guttata GCA_008822115.3_bTaeGut2.mat.v3 206 995,952,786 583 15,480,445 20.34
385 zebra finch (paternal W) Taeniopygia guttata GCF_008822105.2_bTaeGut2.pat.W.v2 205 1,068,988,106 857 21,568,737 20.18
386 zebrafish (fDanRer4 alternate hap 2022) Danio rerio GCA_944039255.1_fDanRer4.1_alternate_haplotype 4,719 458,104,506 0 0 59.54
387 zebrafish (WGS:CAHPTA01 2020) Danio rerio GCA_903684865.1_fDreABH1.1 1,252 1,354,075,779 712 197,709 61.16
388 zebrafish (WGS:CAHPTB02 2020) Danio rerio GCA_903684855.2_fDreTuH1.2 755 1,360,506,095 1,352 82,877 60.94
389 zig-zag eel Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype 1,437 43,703,874 0 0 18.09
TOTALS:total assembly count 389 1,457,233 666,181,718,501 318,942 1,207,489,924  
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies