# Assembly name:  mPipHan1.5
# Organism name:  Pipistrellus hanaki (Hanaki's dwarf bat)
# Taxid:          412090
# BioSample:      SAMEA115799862
# BioProject:     PRJEB77246
# Submitter:      Genoscope CEA
# Date:           2025-07-07
# Assembly type:  haploid
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    CAYEYA05
# Assembly method: Hifiasm,Purge_dups,Yahs
# Genome coverage: 36x
# Sequencing technology: PacBio,Arima
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_964339955.5
# RefSeq assembly accession: GCF_964339955.1
# RefSeq assembly and GenBank assemblies identical: yes
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	OZ203233.1	=	NC_140503.1	Primary Assembly	210776044	na
SUPER_2	assembled-molecule	2	Chromosome	OZ203234.1	=	NC_140504.1	Primary Assembly	200298861	na
SUPER_3	assembled-molecule	3	Chromosome	OZ203235.1	=	NC_140505.1	Primary Assembly	189558047	na
SUPER_4	assembled-molecule	4	Chromosome	OZ203236.1	=	NC_140506.1	Primary Assembly	103029890	na
SUPER_5	assembled-molecule	5	Chromosome	OZ203237.1	=	NC_140507.1	Primary Assembly	102958539	na
SUPER_6	assembled-molecule	6	Chromosome	OZ203238.1	=	NC_140508.1	Primary Assembly	89115682	na
SUPER_7	assembled-molecule	7	Chromosome	OZ203239.1	=	NC_140509.1	Primary Assembly	88588496	na
SUPER_8	assembled-molecule	8	Chromosome	OZ203240.1	=	NC_140510.1	Primary Assembly	87370811	na
SUPER_9	assembled-molecule	9	Chromosome	OZ203241.1	=	NC_140511.1	Primary Assembly	80803333	na
SUPER_10	assembled-molecule	10	Chromosome	OZ203242.1	=	NC_140512.1	Primary Assembly	73698839	na
SUPER_11	assembled-molecule	11	Chromosome	OZ203243.1	=	NC_140513.1	Primary Assembly	72184052	na
SUPER_12	assembled-molecule	12	Chromosome	OZ203244.1	=	NC_140514.1	Primary Assembly	71673377	na
SUPER_13	assembled-molecule	13	Chromosome	OZ203245.1	=	NC_140515.1	Primary Assembly	60225022	na
SUPER_14	assembled-molecule	14	Chromosome	OZ203246.1	=	NC_140516.1	Primary Assembly	54391503	na
SUPER_15	assembled-molecule	15	Chromosome	OZ203247.1	=	NC_140517.1	Primary Assembly	53581465	na
SUPER_16	assembled-molecule	16	Chromosome	OZ203248.1	=	NC_140518.1	Primary Assembly	49545385	na
SUPER_17	assembled-molecule	17	Chromosome	OZ203249.1	=	NC_140519.1	Primary Assembly	49289172	na
SUPER_18	assembled-molecule	18	Chromosome	OZ203250.1	=	NC_140520.1	Primary Assembly	40997173	na
SUPER_19	assembled-molecule	19	Chromosome	OZ203251.1	=	NC_140521.1	Primary Assembly	25889765	na
SUPER_20	assembled-molecule	20	Chromosome	OZ203252.1	=	NC_140522.1	Primary Assembly	16909540	na
SUPER_21	assembled-molecule	21	Chromosome	OZ203253.1	=	NC_140523.1	Primary Assembly	9617946	na
X	assembled-molecule	X	Chromosome	OZ203254.1	=	NC_140524.1	Primary Assembly	102996988	na
Y	assembled-molecule	Y	Chromosome	OZ203255.1	=	NC_140525.1	Primary Assembly	5110660	na
SUPER_3_unloc_1	unlocalized-scaffold	3	Chromosome	CAYEYA050000001.1	=	NW_028182305.1	Primary Assembly	489171	na
scaffold_23	unplaced-scaffold	na	na	CAYEYA050000002.1	=	NW_028182304.1	Primary Assembly	7917902	na
scaffold_149	unplaced-scaffold	na	na	CAYEYA050000003.1	=	NW_028182303.1	Primary Assembly	7554314	na
scaffold_24	unplaced-scaffold	na	na	CAYEYA050000004.1	=	NW_028182302.1	Primary Assembly	6510540	na
scaffold_26	unplaced-scaffold	na	na	CAYEYA050000005.1	=	NW_028182301.1	Primary Assembly	3934000	na
scaffold_29	unplaced-scaffold	na	na	CAYEYA050000006.1	=	NW_028182300.1	Primary Assembly	2174072	na
scaffold_31	unplaced-scaffold	na	na	CAYEYA050000007.1	=	NW_028182299.1	Primary Assembly	2137000	na
scaffold_33	unplaced-scaffold	na	na	CAYEYA050000008.1	=	NW_028182298.1	Primary Assembly	1791000	na
scaffold_35	unplaced-scaffold	na	na	CAYEYA050000009.1	=	NW_028182297.1	Primary Assembly	1424000	na
scaffold_36	unplaced-scaffold	na	na	CAYEYA050000010.1	=	NW_028182296.1	Primary Assembly	1177000	na
scaffold_38	unplaced-scaffold	na	na	CAYEYA050000011.1	=	NW_028182295.1	Primary Assembly	1028100	na
scaffold_39	unplaced-scaffold	na	na	CAYEYA050000012.1	=	NW_028182294.1	Primary Assembly	1019979	na
scaffold_40	unplaced-scaffold	na	na	CAYEYA050000013.1	=	NW_028182293.1	Primary Assembly	953000	na
scaffold_41	unplaced-scaffold	na	na	CAYEYA050000014.1	=	NW_028182292.1	Primary Assembly	897657	na
scaffold_42	unplaced-scaffold	na	na	CAYEYA050000015.1	=	NW_028182291.1	Primary Assembly	870000	na
scaffold_43	unplaced-scaffold	na	na	CAYEYA050000016.1	=	NW_028182290.1	Primary Assembly	870000	na
scaffold_44	unplaced-scaffold	na	na	CAYEYA050000017.1	=	NW_028182289.1	Primary Assembly	794000	na
scaffold_45	unplaced-scaffold	na	na	CAYEYA050000018.1	=	NW_028182288.1	Primary Assembly	740000	na
scaffold_46	unplaced-scaffold	na	na	CAYEYA050000019.1	=	NW_028182287.1	Primary Assembly	587000	na
scaffold_48	unplaced-scaffold	na	na	CAYEYA050000020.1	=	NW_028182286.1	Primary Assembly	460000	na
scaffold_49	unplaced-scaffold	na	na	CAYEYA050000021.1	=	NW_028182285.1	Primary Assembly	445000	na
scaffold_50	unplaced-scaffold	na	na	CAYEYA050000022.1	=	NW_028182284.1	Primary Assembly	430000	na
scaffold_51	unplaced-scaffold	na	na	CAYEYA050000023.1	=	NW_028182283.1	Primary Assembly	385000	na
scaffold_52	unplaced-scaffold	na	na	CAYEYA050000024.1	=	NW_028182282.1	Primary Assembly	385000	na
scaffold_53	unplaced-scaffold	na	na	CAYEYA050000025.1	=	NW_028182281.1	Primary Assembly	383727	na
scaffold_54	unplaced-scaffold	na	na	CAYEYA050000026.1	=	NW_028182280.1	Primary Assembly	381000	na
scaffold_55	unplaced-scaffold	na	na	CAYEYA050000027.1	=	NW_028182279.1	Primary Assembly	367000	na
scaffold_56	unplaced-scaffold	na	na	CAYEYA050000028.1	=	NW_028182278.1	Primary Assembly	353000	na
scaffold_57	unplaced-scaffold	na	na	CAYEYA050000029.1	=	NW_028182277.1	Primary Assembly	345000	na
scaffold_59	unplaced-scaffold	na	na	CAYEYA050000030.1	=	NW_028182276.1	Primary Assembly	320000	na
scaffold_60	unplaced-scaffold	na	na	CAYEYA050000031.1	=	NW_028182275.1	Primary Assembly	301000	na
scaffold_61	unplaced-scaffold	na	na	CAYEYA050000032.1	=	NW_028182274.1	Primary Assembly	294916	na
scaffold_62	unplaced-scaffold	na	na	CAYEYA050000033.1	=	NW_028182273.1	Primary Assembly	284163	na
scaffold_63	unplaced-scaffold	na	na	CAYEYA050000034.1	=	NW_028182272.1	Primary Assembly	270044	na
scaffold_64	unplaced-scaffold	na	na	CAYEYA050000035.1	=	NW_028182271.1	Primary Assembly	242000	na
scaffold_65	unplaced-scaffold	na	na	CAYEYA050000036.1	=	NW_028182270.1	Primary Assembly	210000	na
scaffold_66	unplaced-scaffold	na	na	CAYEYA050000037.1	=	NW_028182269.1	Primary Assembly	201000	na
scaffold_67	unplaced-scaffold	na	na	CAYEYA050000038.1	=	NW_028182268.1	Primary Assembly	175000	na
scaffold_68	unplaced-scaffold	na	na	CAYEYA050000039.1	=	NW_028182267.1	Primary Assembly	166095	na
scaffold_69	unplaced-scaffold	na	na	CAYEYA050000040.1	=	NW_028182266.1	Primary Assembly	165000	na
scaffold_70	unplaced-scaffold	na	na	CAYEYA050000041.1	=	NW_028182265.1	Primary Assembly	151000	na
scaffold_71	unplaced-scaffold	na	na	CAYEYA050000042.1	=	NW_028182264.1	Primary Assembly	145000	na
scaffold_72	unplaced-scaffold	na	na	CAYEYA050000043.1	=	NW_028182263.1	Primary Assembly	139191	na
scaffold_73	unplaced-scaffold	na	na	CAYEYA050000044.1	=	NW_028182262.1	Primary Assembly	125000	na
scaffold_74	unplaced-scaffold	na	na	CAYEYA050000045.1	=	NW_028182261.1	Primary Assembly	118751	na
scaffold_75	unplaced-scaffold	na	na	CAYEYA050000046.1	=	NW_028182260.1	Primary Assembly	118000	na
scaffold_76	unplaced-scaffold	na	na	CAYEYA050000047.1	=	NW_028182259.1	Primary Assembly	106000	na
scaffold_77	unplaced-scaffold	na	na	CAYEYA050000048.1	=	NW_028182258.1	Primary Assembly	102000	na
scaffold_78	unplaced-scaffold	na	na	CAYEYA050000049.1	=	NW_028182257.1	Primary Assembly	101631	na
scaffold_79	unplaced-scaffold	na	na	CAYEYA050000050.1	=	NW_028182256.1	Primary Assembly	98000	na
scaffold_80	unplaced-scaffold	na	na	CAYEYA050000051.1	=	NW_028182255.1	Primary Assembly	93482	na
scaffold_81	unplaced-scaffold	na	na	CAYEYA050000052.1	=	NW_028182254.1	Primary Assembly	85029	na
scaffold_82	unplaced-scaffold	na	na	CAYEYA050000053.1	=	NW_028182253.1	Primary Assembly	84981	na
scaffold_83	unplaced-scaffold	na	na	CAYEYA050000054.1	=	NW_028182252.1	Primary Assembly	84341	na
scaffold_84	unplaced-scaffold	na	na	CAYEYA050000055.1	=	NW_028182251.1	Primary Assembly	81229	na
scaffold_85	unplaced-scaffold	na	na	CAYEYA050000056.1	=	NW_028182250.1	Primary Assembly	81060	na
scaffold_86	unplaced-scaffold	na	na	CAYEYA050000057.1	=	NW_028182249.1	Primary Assembly	80000	na
scaffold_88	unplaced-scaffold	na	na	CAYEYA050000058.1	=	NW_028182248.1	Primary Assembly	74426	na
scaffold_89	unplaced-scaffold	na	na	CAYEYA050000059.1	=	NW_028182247.1	Primary Assembly	73361	na
scaffold_90	unplaced-scaffold	na	na	CAYEYA050000060.1	=	NW_028182246.1	Primary Assembly	72000	na
scaffold_91	unplaced-scaffold	na	na	CAYEYA050000061.1	=	NW_028182245.1	Primary Assembly	69319	na
scaffold_92	unplaced-scaffold	na	na	CAYEYA050000062.1	=	NW_028182244.1	Primary Assembly	68700	na
scaffold_93	unplaced-scaffold	na	na	CAYEYA050000063.1	=	NW_028182243.1	Primary Assembly	65412	na
scaffold_94	unplaced-scaffold	na	na	CAYEYA050000064.1	=	NW_028182242.1	Primary Assembly	65000	na
scaffold_95	unplaced-scaffold	na	na	CAYEYA050000065.1	=	NW_028182241.1	Primary Assembly	64300	na
scaffold_96	unplaced-scaffold	na	na	CAYEYA050000066.1	=	NW_028182240.1	Primary Assembly	62000	na
scaffold_97	unplaced-scaffold	na	na	CAYEYA050000067.1	=	NW_028182239.1	Primary Assembly	61324	na
scaffold_98	unplaced-scaffold	na	na	CAYEYA050000068.1	=	NW_028182238.1	Primary Assembly	61000	na
scaffold_99	unplaced-scaffold	na	na	CAYEYA050000069.1	=	NW_028182237.1	Primary Assembly	59927	na
scaffold_100	unplaced-scaffold	na	na	CAYEYA050000070.1	=	NW_028182236.1	Primary Assembly	58000	na
scaffold_101	unplaced-scaffold	na	na	CAYEYA050000071.1	=	NW_028182235.1	Primary Assembly	57115	na
scaffold_103	unplaced-scaffold	na	na	CAYEYA050000072.1	=	NW_028182234.1	Primary Assembly	56000	na
scaffold_104	unplaced-scaffold	na	na	CAYEYA050000073.1	=	NW_028182233.1	Primary Assembly	55000	na
scaffold_105	unplaced-scaffold	na	na	CAYEYA050000074.1	=	NW_028182232.1	Primary Assembly	54667	na
scaffold_106	unplaced-scaffold	na	na	CAYEYA050000075.1	=	NW_028182231.1	Primary Assembly	53505	na
scaffold_107	unplaced-scaffold	na	na	CAYEYA050000076.1	=	NW_028182230.1	Primary Assembly	53000	na
scaffold_108	unplaced-scaffold	na	na	CAYEYA050000077.1	=	NW_028182229.1	Primary Assembly	53000	na
scaffold_109	unplaced-scaffold	na	na	CAYEYA050000078.1	=	NW_028182228.1	Primary Assembly	51472	na
scaffold_110	unplaced-scaffold	na	na	CAYEYA050000079.1	=	NW_028182227.1	Primary Assembly	51000	na
scaffold_111	unplaced-scaffold	na	na	CAYEYA050000080.1	=	NW_028182226.1	Primary Assembly	49000	na
scaffold_112	unplaced-scaffold	na	na	CAYEYA050000081.1	=	NW_028182225.1	Primary Assembly	46900	na
scaffold_113	unplaced-scaffold	na	na	CAYEYA050000082.1	=	NW_028182224.1	Primary Assembly	41544	na
scaffold_114	unplaced-scaffold	na	na	CAYEYA050000083.1	=	NW_028182223.1	Primary Assembly	39569	na
scaffold_115	unplaced-scaffold	na	na	CAYEYA050000084.1	=	NW_028182222.1	Primary Assembly	38603	na
scaffold_116	unplaced-scaffold	na	na	CAYEYA050000085.1	=	NW_028182221.1	Primary Assembly	37968	na
scaffold_117	unplaced-scaffold	na	na	CAYEYA050000086.1	=	NW_028182220.1	Primary Assembly	37000	na
scaffold_118	unplaced-scaffold	na	na	CAYEYA050000087.1	=	NW_028182219.1	Primary Assembly	36910	na
scaffold_119	unplaced-scaffold	na	na	CAYEYA050000088.1	=	NW_028182218.1	Primary Assembly	36655	na
scaffold_120	unplaced-scaffold	na	na	CAYEYA050000089.1	=	NW_028182217.1	Primary Assembly	33109	na
scaffold_121	unplaced-scaffold	na	na	CAYEYA050000090.1	=	NW_028182216.1	Primary Assembly	32969	na
scaffold_122	unplaced-scaffold	na	na	CAYEYA050000091.1	=	NW_028182215.1	Primary Assembly	32833	na
scaffold_123	unplaced-scaffold	na	na	CAYEYA050000092.1	=	NW_028182214.1	Primary Assembly	32354	na
scaffold_124	unplaced-scaffold	na	na	CAYEYA050000093.1	=	NW_028182213.1	Primary Assembly	30998	na
scaffold_125	unplaced-scaffold	na	na	CAYEYA050000094.1	=	NW_028182212.1	Primary Assembly	30690	na
scaffold_126	unplaced-scaffold	na	na	CAYEYA050000095.1	=	NW_028182211.1	Primary Assembly	30177	na
scaffold_127	unplaced-scaffold	na	na	CAYEYA050000096.1	=	NW_028182210.1	Primary Assembly	27716	na
scaffold_128	unplaced-scaffold	na	na	CAYEYA050000097.1	=	NW_028182209.1	Primary Assembly	25607	na
scaffold_129	unplaced-scaffold	na	na	CAYEYA050000098.1	=	NW_028182208.1	Primary Assembly	25216	na
scaffold_130	unplaced-scaffold	na	na	CAYEYA050000099.1	=	NW_028182207.1	Primary Assembly	23474	na
scaffold_131	unplaced-scaffold	na	na	CAYEYA050000100.1	=	NW_028182206.1	Primary Assembly	22453	na
scaffold_132	unplaced-scaffold	na	na	CAYEYA050000101.1	=	NW_028182205.1	Primary Assembly	21046	na
scaffold_133	unplaced-scaffold	na	na	CAYEYA050000102.1	=	NW_028182204.1	Primary Assembly	21024	na
scaffold_134	unplaced-scaffold	na	na	CAYEYA050000103.1	=	NW_028182203.1	Primary Assembly	19000	na
scaffold_135	unplaced-scaffold	na	na	CAYEYA050000104.1	=	NW_028182202.1	Primary Assembly	19000	na
scaffold_136	unplaced-scaffold	na	na	CAYEYA050000105.1	=	NW_028182201.1	Primary Assembly	18957	na
scaffold_137	unplaced-scaffold	na	na	CAYEYA050000106.1	=	NW_028182200.1	Primary Assembly	18000	na
scaffold_138	unplaced-scaffold	na	na	CAYEYA050000107.1	=	NW_028182199.1	Primary Assembly	18000	na
scaffold_139	unplaced-scaffold	na	na	CAYEYA050000108.1	=	NW_028182198.1	Primary Assembly	17710	na
scaffold_140	unplaced-scaffold	na	na	CAYEYA050000109.1	=	NW_028182197.1	Primary Assembly	17698	na
scaffold_141	unplaced-scaffold	na	na	CAYEYA050000110.1	=	NW_028182196.1	Primary Assembly	16359	na
scaffold_142	unplaced-scaffold	na	na	CAYEYA050000111.1	=	NW_028182195.1	Primary Assembly	15025	na
scaffold_143	unplaced-scaffold	na	na	CAYEYA050000112.1	=	NW_028182194.1	Primary Assembly	14953	na
scaffold_144	unplaced-scaffold	na	na	CAYEYA050000113.1	=	NW_028182193.1	Primary Assembly	13000	na
scaffold_145	unplaced-scaffold	na	na	CAYEYA050000114.1	=	NW_028182192.1	Primary Assembly	12409	na
scaffold_146	unplaced-scaffold	na	na	CAYEYA050000115.1	=	NW_028182191.1	Primary Assembly	12342	na
scaffold_147	unplaced-scaffold	na	na	CAYEYA050000116.1	=	NW_028182190.1	Primary Assembly	11000	na
scaffold_148	unplaced-scaffold	na	na	CAYEYA050000117.1	=	NW_028182189.1	Primary Assembly	11000	na
mitochondrion_1	assembled-molecule	MIT_1	Mitochondrion	OZ248639.1	=	NW_028182188.1	non-nuclear	15864	na