# Assembly name: 202201775 # Organism name: Listeria tempestatis (firmicutes) # Infraspecific name: strain=CLIP 2022/01175 # Taxid: 3422319 # BioSample: SAMN27365749 # BioProject: PRJEB20026 # Submitter: Institut Pasteur # Date: 2023-10-29 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: CAUYTK01 # Assembly method: SPades # Genome coverage: 318x # Sequencing technology: Illumina # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_963575625.1 # RefSeq assembly accession: GCF_963575625.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Unit names: ## Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1_length_520966_cov_123.423777_pilon unplaced-scaffold na na CAUYTK010000001.1 = NZ_CAUYTK010000001.1 Primary Assembly 520966 na NODE_2_length_434109_cov_121.789375_pilon unplaced-scaffold na na CAUYTK010000002.1 = NZ_CAUYTK010000002.1 Primary Assembly 434109 na NODE_3_length_354035_cov_122.697303_pilon unplaced-scaffold na na CAUYTK010000003.1 = NZ_CAUYTK010000003.1 Primary Assembly 354035 na NODE_4_length_304230_cov_125.070109_pilon unplaced-scaffold na na CAUYTK010000004.1 = NZ_CAUYTK010000004.1 Primary Assembly 304230 na NODE_5_length_144070_cov_122.310605_pilon unplaced-scaffold na na CAUYTK010000005.1 = NZ_CAUYTK010000005.1 Primary Assembly 144070 na NODE_6_length_119082_cov_135.353279_pilon unplaced-scaffold na na CAUYTK010000006.1 = NZ_CAUYTK010000006.1 Primary Assembly 119082 na NODE_7_length_116633_cov_124.719345_pilon unplaced-scaffold na na CAUYTK010000007.1 = NZ_CAUYTK010000007.1 Primary Assembly 116633 na NODE_8_length_108508_cov_124.364545_pilon unplaced-scaffold na na CAUYTK010000008.1 = NZ_CAUYTK010000008.1 Primary Assembly 108508 na NODE_9_length_97646_cov_138.912257_pilon unplaced-scaffold na na CAUYTK010000009.1 = NZ_CAUYTK010000009.1 Primary Assembly 97646 na NODE_10_length_94577_cov_135.849746_pilon unplaced-scaffold na na CAUYTK010000010.1 = NZ_CAUYTK010000010.1 Primary Assembly 94577 na NODE_11_length_86607_cov_105.765642_pilon unplaced-scaffold na na CAUYTK010000011.1 = NZ_CAUYTK010000011.1 Primary Assembly 86607 na NODE_12_length_72668_cov_119.417628_pilon unplaced-scaffold na na CAUYTK010000012.1 = NZ_CAUYTK010000012.1 Primary Assembly 72668 na NODE_13_length_60269_cov_140.942484_pilon unplaced-scaffold na na CAUYTK010000013.1 = NZ_CAUYTK010000013.1 Primary Assembly 60269 na NODE_14_length_58841_cov_146.315516_pilon unplaced-scaffold na na CAUYTK010000014.1 = NZ_CAUYTK010000014.1 Primary Assembly 58841 na NODE_15_length_54529_cov_130.281385_pilon unplaced-scaffold na na CAUYTK010000015.1 = NZ_CAUYTK010000015.1 Primary Assembly 54529 na NODE_16_length_53459_cov_151.108426_pilon unplaced-scaffold na na CAUYTK010000016.1 = NZ_CAUYTK010000016.1 Primary Assembly 53459 na NODE_17_length_52842_cov_110.430986_pilon unplaced-scaffold na na CAUYTK010000017.1 = NZ_CAUYTK010000017.1 Primary Assembly 52842 na NODE_18_length_43410_cov_116.913899_pilon unplaced-scaffold na na CAUYTK010000018.1 = NZ_CAUYTK010000018.1 Primary Assembly 43410 na NODE_19_length_25155_cov_152.872797_pilon unplaced-scaffold na na CAUYTK010000019.1 = NZ_CAUYTK010000019.1 Primary Assembly 25155 na NODE_20_length_7962_cov_109.194673_pilon unplaced-scaffold na na CAUYTK010000020.1 = NZ_CAUYTK010000020.1 Primary Assembly 7962 na NODE_21_length_5429_cov_91.274103_pilon unplaced-scaffold na na CAUYTK010000021.1 = NZ_CAUYTK010000021.1 Primary Assembly 5429 na NODE_22_length_4800_cov_86.467499_pilon unplaced-scaffold na na CAUYTK010000022.1 = NZ_CAUYTK010000022.1 Primary Assembly 4800 na NODE_23_length_3071_cov_1734.875418_pilon unplaced-scaffold na na CAUYTK010000023.1 = NZ_CAUYTK010000023.1 Primary Assembly 3071 na NODE_24_length_1577_cov_169.837333_pilon unplaced-scaffold na na CAUYTK010000024.1 = NZ_CAUYTK010000024.1 Primary Assembly 1577 na NODE_25_length_1456_cov_48.719362_pilon unplaced-scaffold na na CAUYTK010000025.1 = NZ_CAUYTK010000025.1 Primary Assembly 1456 na NODE_26_length_1332_cov_1719.607171_pilon unplaced-scaffold na na CAUYTK010000026.1 = NZ_CAUYTK010000026.1 Primary Assembly 1332 na NODE_27_length_750_cov_218.624071_pilon unplaced-scaffold na na CAUYTK010000027.1 = NZ_CAUYTK010000027.1 Primary Assembly 750 na NODE_28_length_707_cov_694.239683_pilon unplaced-scaffold na na CAUYTK010000028.1 = NZ_CAUYTK010000028.1 Primary Assembly 707 na NODE_29_length_611_cov_287.022472_pilon unplaced-scaffold na na CAUYTK010000029.1 = NZ_CAUYTK010000029.1 Primary Assembly 611 na NODE_30_length_521_cov_173.319820_pilon unplaced-scaffold na na CAUYTK010000030.1 = NZ_CAUYTK010000030.1 Primary Assembly 521 na NODE_31_length_470_cov_1815.862595_pilon unplaced-scaffold na na CAUYTK010000031.1 = NZ_CAUYTK010000031.1 Primary Assembly 470 na NODE_32_length_447_cov_237.816216_pilon unplaced-scaffold na na CAUYTK010000032.1 = NZ_CAUYTK010000032.1 Primary Assembly 447 na NODE_33_length_446_cov_281.341463_pilon unplaced-scaffold na na CAUYTK010000033.1 = NZ_CAUYTK010000033.1 Primary Assembly 446 na NODE_34_length_395_cov_68.069182_pilon unplaced-scaffold na na CAUYTK010000034.1 = NZ_CAUYTK010000034.1 Primary Assembly 395 na NODE_35_length_317_cov_0.750000_pilon unplaced-scaffold na na CAUYTK010000035.1 = NZ_CAUYTK010000035.1 Primary Assembly 317 na NODE_36_length_315_cov_335.848739_pilon unplaced-scaffold na na CAUYTK010000036.1 = NZ_CAUYTK010000036.1 Primary Assembly 315 na NODE_37_length_312_cov_0.851064_pilon unplaced-scaffold na na CAUYTK010000037.1 = NZ_CAUYTK010000037.1 Primary Assembly 312 na NODE_38_length_304_cov_0.722467_pilon unplaced-scaffold na na CAUYTK010000038.1 = NZ_CAUYTK010000038.1 Primary Assembly 304 na