# Assembly name: mChiNiv1.1 # Organism name: Chionomys nivalis (European snow vole) # Taxid: 269649 # BioSample: SAMEA13217622 # BioProject: PRJEB61598 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2023-05-01 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CATLKQ01 # Assembly method: various # Genome coverage: 26x # Sequencing technology: PacBio,Arima2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_950005125.1 # RefSeq assembly accession: GCF_950005125.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_950005115.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_950005124.1 GCF_950005124.1 Primary Assembly ## GCA_950005126.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OX465448.1 = NC_080086.1 Primary Assembly 205897943 na SUPER_2 assembled-molecule 2 Chromosome OX465450.1 = NC_080087.1 Primary Assembly 137242143 na SUPER_3 assembled-molecule 3 Chromosome OX465451.1 = NC_080088.1 Primary Assembly 127609482 na SUPER_4 assembled-molecule 4 Chromosome OX465452.1 = NC_080089.1 Primary Assembly 120218571 na SUPER_5 assembled-molecule 5 Chromosome OX465453.1 = NC_080090.1 Primary Assembly 115466156 na SUPER_6 assembled-molecule 6 Chromosome OX465454.1 = NC_080091.1 Primary Assembly 102988758 na SUPER_7 assembled-molecule 7 Chromosome OX465455.1 = NC_080092.1 Primary Assembly 102402464 na SUPER_8 assembled-molecule 8 Chromosome OX465456.1 = NC_080093.1 Primary Assembly 97493002 na SUPER_9 assembled-molecule 9 Chromosome OX465457.1 = NC_080094.1 Primary Assembly 88844950 na SUPER_10 assembled-molecule 10 Chromosome OX465458.1 = NC_080095.1 Primary Assembly 84106376 na SUPER_11 assembled-molecule 11 Chromosome OX465459.1 = NC_080096.1 Primary Assembly 83253510 na SUPER_12 assembled-molecule 12 Chromosome OX465460.1 = NC_080097.1 Primary Assembly 78626399 na SUPER_13 assembled-molecule 13 Chromosome OX465461.1 = NC_080098.1 Primary Assembly 76505926 na SUPER_14 assembled-molecule 14 Chromosome OX465462.1 = NC_080099.1 Primary Assembly 74490819 na SUPER_15 assembled-molecule 15 Chromosome OX465463.1 = NC_080100.1 Primary Assembly 71441066 na SUPER_16 assembled-molecule 16 Chromosome OX465464.1 = NC_080101.1 Primary Assembly 69317071 na SUPER_17 assembled-molecule 17 Chromosome OX465465.1 = NC_080102.1 Primary Assembly 65541755 na SUPER_18 assembled-molecule 18 Chromosome OX465466.1 = NC_080103.1 Primary Assembly 64601834 na SUPER_19 assembled-molecule 19 Chromosome OX465467.1 = NC_080104.1 Primary Assembly 63902736 na SUPER_20 assembled-molecule 20 Chromosome OX465468.1 = NC_080105.1 Primary Assembly 62300379 na SUPER_21 assembled-molecule 21 Chromosome OX465469.1 = NC_080106.1 Primary Assembly 57930001 na SUPER_22 assembled-molecule 22 Chromosome OX465470.1 = NC_080107.1 Primary Assembly 57725763 na SUPER_23 assembled-molecule 23 Chromosome OX465471.1 = NC_080108.1 Primary Assembly 54003058 na SUPER_24 assembled-molecule 24 Chromosome OX465472.1 = NC_080109.1 Primary Assembly 53267083 na SUPER_25 assembled-molecule 25 Chromosome OX465473.1 = NC_080110.1 Primary Assembly 42740773 na SUPER_26 assembled-molecule 26 Chromosome OX465474.1 = NC_080111.1 Primary Assembly 41320754 na SUPER_X assembled-molecule X Chromosome OX465449.1 = NC_080112.1 Primary Assembly 137629621 na SUPER_Y assembled-molecule Y Chromosome OX465475.1 = NC_080113.1 Primary Assembly 7198864 na SUPER_23_unloc_1 unlocalized-scaffold 23 Chromosome CATLKQ010000001.1 = NW_026646869.1 Primary Assembly 2766000 na scaffold_57 unplaced-scaffold na na CATLKQ010000002.1 = NW_026646870.1 Primary Assembly 1056147 na scaffold_190 unplaced-scaffold na na CATLKQ010000003.1 = NW_026646871.1 Primary Assembly 22000 na scaffold_125 unplaced-scaffold na na CATLKQ010000004.1 = NW_026646872.1 Primary Assembly 120000 na scaffold_124 unplaced-scaffold na na CATLKQ010000005.1 = NW_026646873.1 Primary Assembly 123000 na scaffold_168 unplaced-scaffold na na CATLKQ010000006.1 = NW_026646874.1 Primary Assembly 57394 na scaffold_146 unplaced-scaffold na na CATLKQ010000007.1 = NW_026646875.1 Primary Assembly 76025 na scaffold_151 unplaced-scaffold na na CATLKQ010000008.1 = NW_026646876.1 Primary Assembly 70000 na scaffold_166 unplaced-scaffold na na CATLKQ010000009.1 = NW_026646877.1 Primary Assembly 59000 na scaffold_148 unplaced-scaffold na na CATLKQ010000010.1 = NW_026646878.1 Primary Assembly 72000 na scaffold_86 unplaced-scaffold na na CATLKQ010000011.1 = NW_026646879.1 Primary Assembly 312000 na scaffold_54 unplaced-scaffold na na CATLKQ010000012.1 = NW_026646880.1 Primary Assembly 1229000 na scaffold_130 unplaced-scaffold na na CATLKQ010000013.1 = NW_026646881.1 Primary Assembly 110000 na scaffold_98 unplaced-scaffold na na CATLKQ010000014.1 = NW_026646882.1 Primary Assembly 202008 na scaffold_84 unplaced-scaffold na na CATLKQ010000015.1 = NW_026646883.1 Primary Assembly 380487 na scaffold_56 unplaced-scaffold na na CATLKQ010000016.1 = NW_026646884.1 Primary Assembly 1056624 na scaffold_115 unplaced-scaffold na na CATLKQ010000017.1 = NW_026646885.1 Primary Assembly 135490 na scaffold_114 unplaced-scaffold na na CATLKQ010000018.1 = NW_026646886.1 Primary Assembly 135673 na scaffold_176 unplaced-scaffold na na CATLKQ010000019.1 = NW_026646887.1 Primary Assembly 51000 na scaffold_29 unplaced-scaffold na na CATLKQ010000020.1 = NW_026646888.1 Primary Assembly 6445000 na scaffold_75 unplaced-scaffold na na CATLKQ010000021.1 = NW_026646889.1 Primary Assembly 548823 na scaffold_178 unplaced-scaffold na na CATLKQ010000022.1 = NW_026646890.1 Primary Assembly 50000 na scaffold_60 unplaced-scaffold na na CATLKQ010000023.1 = NW_026646891.1 Primary Assembly 1023000 na scaffold_189 unplaced-scaffold na na CATLKQ010000024.1 = NW_026646892.1 Primary Assembly 22651 na scaffold_140 unplaced-scaffold na na CATLKQ010000025.1 = NW_026646893.1 Primary Assembly 97987 na scaffold_160 unplaced-scaffold na na CATLKQ010000026.1 = NW_026646894.1 Primary Assembly 62000 na scaffold_196 unplaced-scaffold na na CATLKQ010000027.1 = NW_026646895.1 Primary Assembly 2000 na scaffold_111 unplaced-scaffold na na CATLKQ010000028.1 = NW_026646896.1 Primary Assembly 140000 na scaffold_155 unplaced-scaffold na na CATLKQ010000029.1 = NW_026646897.1 Primary Assembly 67000 na scaffold_170 unplaced-scaffold na na CATLKQ010000030.1 = NW_026646898.1 Primary Assembly 56336 na scaffold_89 unplaced-scaffold na na CATLKQ010000031.1 = NW_026646899.1 Primary Assembly 297328 na scaffold_102 unplaced-scaffold na na CATLKQ010000032.1 = NW_026646900.1 Primary Assembly 184729 na scaffold_138 unplaced-scaffold na na CATLKQ010000033.1 = NW_026646901.1 Primary Assembly 101725 na scaffold_121 unplaced-scaffold na na CATLKQ010000034.1 = NW_026646902.1 Primary Assembly 127000 na scaffold_154 unplaced-scaffold na na CATLKQ010000035.1 = NW_026646903.1 Primary Assembly 67000 na scaffold_136 unplaced-scaffold na na CATLKQ010000036.1 = NW_026646904.1 Primary Assembly 102525 na scaffold_187 unplaced-scaffold na na CATLKQ010000037.1 = NW_026646905.1 Primary Assembly 25010 na scaffold_197 unplaced-scaffold na na CATLKQ010000038.1 = NW_026646906.1 Primary Assembly 1000 na scaffold_101 unplaced-scaffold na na CATLKQ010000039.1 = NW_026646907.1 Primary Assembly 190000 na scaffold_133 unplaced-scaffold na na CATLKQ010000040.1 = NW_026646908.1 Primary Assembly 106637 na scaffold_139 unplaced-scaffold na na CATLKQ010000041.1 = NW_026646909.1 Primary Assembly 98959 na scaffold_88 unplaced-scaffold na na CATLKQ010000042.1 = NW_026646910.1 Primary Assembly 311000 na scaffold_122 unplaced-scaffold na na CATLKQ010000043.1 = NW_026646911.1 Primary Assembly 127000 na scaffold_94 unplaced-scaffold na na CATLKQ010000044.1 = NW_026646912.1 Primary Assembly 253000 na scaffold_58 unplaced-scaffold na na CATLKQ010000045.1 = NW_026646913.1 Primary Assembly 1046270 na scaffold_96 unplaced-scaffold na na CATLKQ010000046.1 = NW_026646914.1 Primary Assembly 228375 na scaffold_193 unplaced-scaffold na na CATLKQ010000047.1 = NW_026646915.1 Primary Assembly 16000 na scaffold_188 unplaced-scaffold na na CATLKQ010000048.1 = NW_026646916.1 Primary Assembly 24862 na scaffold_65 unplaced-scaffold na na CATLKQ010000049.1 = NW_026646917.1 Primary Assembly 891000 na scaffold_112 unplaced-scaffold na na CATLKQ010000050.1 = NW_026646918.1 Primary Assembly 139000 na scaffold_97 unplaced-scaffold na na CATLKQ010000051.1 = NW_026646919.1 Primary Assembly 210000 na scaffold_173 unplaced-scaffold na na CATLKQ010000052.1 = NW_026646920.1 Primary Assembly 54000 na scaffold_147 unplaced-scaffold na na CATLKQ010000053.1 = NW_026646921.1 Primary Assembly 76000 na scaffold_28 unplaced-scaffold na na CATLKQ010000054.1 = NW_026646922.1 Primary Assembly 8129000 na scaffold_167 unplaced-scaffold na na CATLKQ010000055.1 = NW_026646923.1 Primary Assembly 58742 na scaffold_99 unplaced-scaffold na na CATLKQ010000056.1 = NW_026646924.1 Primary Assembly 199383 na scaffold_179 unplaced-scaffold na na CATLKQ010000057.1 = NW_026646925.1 Primary Assembly 40000 na scaffold_61 unplaced-scaffold na na CATLKQ010000058.1 = NW_026646926.1 Primary Assembly 1020000 na scaffold_177 unplaced-scaffold na na CATLKQ010000059.1 = NW_026646927.1 Primary Assembly 51000 na scaffold_143 unplaced-scaffold na na CATLKQ010000060.1 = NW_026646928.1 Primary Assembly 85708 na scaffold_163 unplaced-scaffold na na CATLKQ010000061.1 = NW_026646929.1 Primary Assembly 60000 na scaffold_104 unplaced-scaffold na na CATLKQ010000062.1 = NW_026646930.1 Primary Assembly 163321 na scaffold_105 unplaced-scaffold na na CATLKQ010000063.1 = NW_026646931.1 Primary Assembly 162302 na scaffold_169 unplaced-scaffold na na CATLKQ010000064.1 = NW_026646932.1 Primary Assembly 57000 na scaffold_93 unplaced-scaffold na na CATLKQ010000065.1 = NW_026646933.1 Primary Assembly 260976 na scaffold_149 unplaced-scaffold na na CATLKQ010000066.1 = NW_026646934.1 Primary Assembly 71000 na scaffold_152 unplaced-scaffold na na CATLKQ010000067.1 = NW_026646935.1 Primary Assembly 70000 na scaffold_123 unplaced-scaffold na na CATLKQ010000068.1 = NW_026646936.1 Primary Assembly 124000 na scaffold_67 unplaced-scaffold na na CATLKQ010000069.1 = NW_026646937.1 Primary Assembly 842000 na scaffold_108 unplaced-scaffold na na CATLKQ010000070.1 = NW_026646938.1 Primary Assembly 148338 na scaffold_117 unplaced-scaffold na na CATLKQ010000071.1 = NW_026646939.1 Primary Assembly 131000 na scaffold_106 unplaced-scaffold na na CATLKQ010000072.1 = NW_026646940.1 Primary Assembly 161000 na scaffold_78 unplaced-scaffold na na CATLKQ010000073.1 = NW_026646941.1 Primary Assembly 533000 na scaffold_132 unplaced-scaffold na na CATLKQ010000074.1 = NW_026646942.1 Primary Assembly 106642 na scaffold_95 unplaced-scaffold na na CATLKQ010000075.1 = NW_026646943.1 Primary Assembly 248304 na scaffold_129 unplaced-scaffold na na CATLKQ010000076.1 = NW_026646944.1 Primary Assembly 114000 na scaffold_127 unplaced-scaffold na na CATLKQ010000077.1 = NW_026646945.1 Primary Assembly 115000 na scaffold_113 unplaced-scaffold na na CATLKQ010000078.1 = NW_026646946.1 Primary Assembly 138000 na scaffold_66 unplaced-scaffold na na CATLKQ010000079.1 = NW_026646947.1 Primary Assembly 847000 na scaffold_181 unplaced-scaffold na na CATLKQ010000080.1 = NW_026646948.1 Primary Assembly 31000 na scaffold_80 unplaced-scaffold na na CATLKQ010000081.1 = NW_026646949.1 Primary Assembly 494260 na scaffold_192 unplaced-scaffold na na CATLKQ010000082.1 = NW_026646950.1 Primary Assembly 16686 na scaffold_119 unplaced-scaffold na na CATLKQ010000083.1 = NW_026646951.1 Primary Assembly 130048 na scaffold_50 unplaced-scaffold na na CATLKQ010000084.1 = NW_026646952.1 Primary Assembly 1318369 na scaffold_157 unplaced-scaffold na na CATLKQ010000085.1 = NW_026646953.1 Primary Assembly 66000 na scaffold_91 unplaced-scaffold na na CATLKQ010000086.1 = NW_026646954.1 Primary Assembly 279279 na scaffold_185 unplaced-scaffold na na CATLKQ010000087.1 = NW_026646955.1 Primary Assembly 25947 na scaffold_172 unplaced-scaffold na na CATLKQ010000088.1 = NW_026646956.1 Primary Assembly 54000 na scaffold_100 unplaced-scaffold na na CATLKQ010000089.1 = NW_026646957.1 Primary Assembly 198000 na scaffold_153 unplaced-scaffold na na CATLKQ010000090.1 = NW_026646958.1 Primary Assembly 68616 na scaffold_159 unplaced-scaffold na na CATLKQ010000091.1 = NW_026646959.1 Primary Assembly 62892 na scaffold_92 unplaced-scaffold na na CATLKQ010000092.1 = NW_026646960.1 Primary Assembly 272000 na scaffold_142 unplaced-scaffold na na CATLKQ010000093.1 = NW_026646961.1 Primary Assembly 86000 na scaffold_162 unplaced-scaffold na na CATLKQ010000094.1 = NW_026646962.1 Primary Assembly 60000 na scaffold_110 unplaced-scaffold na na CATLKQ010000095.1 = NW_026646963.1 Primary Assembly 142000 na scaffold_135 unplaced-scaffold na na CATLKQ010000096.1 = NW_026646964.1 Primary Assembly 103102 na scaffold_90 unplaced-scaffold na na CATLKQ010000097.1 = NW_026646965.1 Primary Assembly 291318 na scaffold_141 unplaced-scaffold na na CATLKQ010000098.1 = NW_026646966.1 Primary Assembly 93000 na scaffold_44 unplaced-scaffold na na CATLKQ010000099.1 = NW_026646967.1 Primary Assembly 1578952 na scaffold_77 unplaced-scaffold na na CATLKQ010000100.1 = NW_026646968.1 Primary Assembly 533406 na scaffold_158 unplaced-scaffold na na CATLKQ010000101.1 = NW_026646969.1 Primary Assembly 66000 na scaffold_68 unplaced-scaffold na na CATLKQ010000102.1 = NW_026646970.1 Primary Assembly 804000 na scaffold_161 unplaced-scaffold na na CATLKQ010000103.1 = NW_026646971.1 Primary Assembly 60561 na scaffold_134 unplaced-scaffold na na CATLKQ010000104.1 = NW_026646972.1 Primary Assembly 104000 na scaffold_156 unplaced-scaffold na na CATLKQ010000105.1 = NW_026646973.1 Primary Assembly 67000 na scaffold_85 unplaced-scaffold na na CATLKQ010000106.1 = NW_026646974.1 Primary Assembly 339413 na scaffold_120 unplaced-scaffold na na CATLKQ010000107.1 = NW_026646975.1 Primary Assembly 128273 na scaffold_195 unplaced-scaffold na na CATLKQ010000108.1 = NW_026646976.1 Primary Assembly 13000 na scaffold_55 unplaced-scaffold na na CATLKQ010000109.1 = NW_026646977.1 Primary Assembly 1181798 na scaffold_74 unplaced-scaffold na na CATLKQ010000110.1 = NW_026646978.1 Primary Assembly 589000 na scaffold_171 unplaced-scaffold na na CATLKQ010000111.1 = NW_026646979.1 Primary Assembly 55000 na scaffold_194 unplaced-scaffold na na CATLKQ010000112.1 = NW_026646980.1 Primary Assembly 13000 na scaffold_76 unplaced-scaffold na na CATLKQ010000113.1 = NW_026646981.1 Primary Assembly 538000 na scaffold_182 unplaced-scaffold na na CATLKQ010000114.1 = NW_026646982.1 Primary Assembly 30385 na scaffold_175 unplaced-scaffold na na CATLKQ010000115.1 = NW_026646983.1 Primary Assembly 51114 na scaffold_150 unplaced-scaffold na na CATLKQ010000116.1 = NW_026646984.1 Primary Assembly 70000 na scaffold_174 unplaced-scaffold na na CATLKQ010000117.1 = NW_026646985.1 Primary Assembly 52000 na scaffold_116 unplaced-scaffold na na CATLKQ010000118.1 = NW_026646986.1 Primary Assembly 132000 na scaffold_118 unplaced-scaffold na na CATLKQ010000119.1 = NW_026646987.1 Primary Assembly 130053 na scaffold_107 unplaced-scaffold na na CATLKQ010000120.1 = NW_026646988.1 Primary Assembly 151000 na scaffold_73 unplaced-scaffold na na CATLKQ010000121.1 = NW_026646989.1 Primary Assembly 648067 na scaffold_165 unplaced-scaffold na na CATLKQ010000122.1 = NW_026646990.1 Primary Assembly 59000 na scaffold_109 unplaced-scaffold na na CATLKQ010000123.1 = NW_026646991.1 Primary Assembly 147139 na scaffold_145 unplaced-scaffold na na CATLKQ010000124.1 = NW_026646992.1 Primary Assembly 82806 na scaffold_144 unplaced-scaffold na na CATLKQ010000125.1 = NW_026646993.1 Primary Assembly 84000 na scaffold_79 unplaced-scaffold na na CATLKQ010000126.1 = NW_026646994.1 Primary Assembly 508000 na scaffold_126 unplaced-scaffold na na CATLKQ010000127.1 = NW_026646995.1 Primary Assembly 115000 na scaffold_103 unplaced-scaffold na na CATLKQ010000128.1 = NW_026646996.1 Primary Assembly 164000 na scaffold_164 unplaced-scaffold na na CATLKQ010000129.1 = NW_026646997.1 Primary Assembly 59153 na scaffold_131 unplaced-scaffold na na CATLKQ010000130.1 = NW_026646998.1 Primary Assembly 109946 na scaffold_43 unplaced-scaffold na na CATLKQ010000131.1 = NW_026646999.1 Primary Assembly 1588000 na scaffold_128 unplaced-scaffold na na CATLKQ010000132.1 = NW_026647000.1 Primary Assembly 114000 na scaffold_MT_1 assembled-molecule MT Mitochondrion OX465476.1 <> na non-nuclear 16292 na