# Assembly name: mCerEla1.1 # Organism name: Cervus elaphus (red deer) # Taxid: 9860 # BioSample: SAMEA7523520 # BioProject: PRJEB45838 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2021-07-07 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAJVBL01 # Genome coverage: 30x # RefSeq category: Representative Genome # GenBank assembly accession: GCA_910594005.1 # RefSeq assembly accession: GCF_910594005.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_910593805.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_910594004.1 GCF_910594004.1 Primary Assembly ## GCA_910594006.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OU343078.1 = NC_057815.1 Primary Assembly 99365844 na SUPER_2 assembled-molecule 2 Chromosome OU343079.1 = NC_057816.1 Primary Assembly 50834548 na SUPER_3 assembled-molecule 3 Chromosome OU343080.1 = NC_057817.1 Primary Assembly 55858895 na SUPER_4 assembled-molecule 4 Chromosome OU343081.1 = NC_057818.1 Primary Assembly 68741660 na SUPER_5 assembled-molecule 5 Chromosome OU343082.1 = NC_057819.1 Primary Assembly 134755514 na SUPER_6 assembled-molecule 6 Chromosome OU343083.1 = NC_057820.1 Primary Assembly 51846305 na SUPER_7 assembled-molecule 7 Chromosome OU343084.1 = NC_057821.1 Primary Assembly 52316097 na SUPER_8 assembled-molecule 8 Chromosome OU343085.1 = NC_057822.1 Primary Assembly 55694185 na SUPER_9 assembled-molecule 9 Chromosome OU343086.1 = NC_057823.1 Primary Assembly 109724705 na SUPER_10 assembled-molecule 10 Chromosome OU343087.1 = NC_057824.1 Primary Assembly 55766398 na SUPER_11 assembled-molecule 11 Chromosome OU343088.1 = NC_057825.1 Primary Assembly 103264037 na SUPER_12 assembled-molecule 12 Chromosome OU343089.1 = NC_057826.1 Primary Assembly 100048917 na SUPER_13 assembled-molecule 13 Chromosome OU343090.1 = NC_057827.1 Primary Assembly 72175023 na SUPER_14 assembled-molecule 14 Chromosome OU343091.1 = NC_057828.1 Primary Assembly 81685338 na SUPER_15 assembled-molecule 15 Chromosome OU343092.1 = NC_057829.1 Primary Assembly 94138249 na SUPER_16 assembled-molecule 16 Chromosome OU343093.1 = NC_057830.1 Primary Assembly 47758366 na SUPER_17 assembled-molecule 17 Chromosome OU343094.1 = NC_057831.1 Primary Assembly 65067212 na SUPER_18 assembled-molecule 18 Chromosome OU343095.1 = NC_057832.1 Primary Assembly 125768775 na SUPER_19 assembled-molecule 19 Chromosome OU343096.1 = NC_057833.1 Primary Assembly 115140355 na SUPER_20 assembled-molecule 20 Chromosome OU343097.1 = NC_057834.1 Primary Assembly 140935159 na SUPER_21 assembled-molecule 21 Chromosome OU343098.1 = NC_057835.1 Primary Assembly 83473711 na SUPER_22 assembled-molecule 22 Chromosome OU343099.1 = NC_057836.1 Primary Assembly 85849967 na SUPER_23 assembled-molecule 23 Chromosome OU343100.1 = NC_057837.1 Primary Assembly 82663824 na SUPER_24 assembled-molecule 24 Chromosome OU343101.1 = NC_057838.1 Primary Assembly 71624245 na SUPER_25 assembled-molecule 25 Chromosome OU343102.1 = NC_057839.1 Primary Assembly 71803109 na SUPER_26 assembled-molecule 26 Chromosome OU343103.1 = NC_057840.1 Primary Assembly 50001067 na SUPER_27 assembled-molecule 27 Chromosome OU343104.1 = NC_057841.1 Primary Assembly 64514562 na SUPER_28 assembled-molecule 28 Chromosome OU343105.1 = NC_057842.1 Primary Assembly 64362491 na SUPER_29 assembled-molecule 29 Chromosome OU343106.1 = NC_057843.1 Primary Assembly 63760408 na SUPER_30 assembled-molecule 30 Chromosome OU343107.1 = NC_057844.1 Primary Assembly 86197926 na SUPER_31 assembled-molecule 31 Chromosome OU343108.1 = NC_057845.1 Primary Assembly 55169878 na SUPER_32 assembled-molecule 32 Chromosome OU343109.1 = NC_057846.1 Primary Assembly 52234794 na SUPER_33 assembled-molecule 33 Chromosome OU343110.1 = NC_057847.1 Primary Assembly 79323360 na SUPER_X assembled-molecule X Chromosome OU343077.1 = NC_057848.1 Primary Assembly 179953079 na contig1 unplaced-scaffold na na CAJVBL010000001.1 = NW_025316680.1 Primary Assembly 4778546 na contig2 unplaced-scaffold na na CAJVBL010000002.1 = NW_025316681.1 Primary Assembly 2006645 na contig3 unplaced-scaffold na na CAJVBL010000003.1 = NW_025316682.1 Primary Assembly 2634843 na contig4 unplaced-scaffold na na CAJVBL010000004.1 = NW_025316683.1 Primary Assembly 2398358 na contig5 unplaced-scaffold na na CAJVBL010000005.1 = NW_025316684.1 Primary Assembly 2155332 na contig6 unplaced-scaffold na na CAJVBL010000006.1 = NW_025316685.1 Primary Assembly 1987307 na contig7 unplaced-scaffold na na CAJVBL010000007.1 = NW_025316686.1 Primary Assembly 1958841 na contig8 unplaced-scaffold na na CAJVBL010000008.1 = NW_025316687.1 Primary Assembly 1925547 na contig9 unplaced-scaffold na na CAJVBL010000009.1 = NW_025316688.1 Primary Assembly 1821897 na contig10 unplaced-scaffold na na CAJVBL010000010.1 = NW_025316689.1 Primary Assembly 1776267 na contig11 unplaced-scaffold na na CAJVBL010000011.1 = NW_025316690.1 Primary Assembly 1767713 na contig12 unplaced-scaffold na na CAJVBL010000012.1 = NW_025316691.1 Primary Assembly 1648014 na contig13 unplaced-scaffold na na CAJVBL010000013.1 = NW_025316692.1 Primary Assembly 1461404 na contig14 unplaced-scaffold na na CAJVBL010000014.1 = NW_025316693.1 Primary Assembly 1428602 na contig15 unplaced-scaffold na na CAJVBL010000015.1 = NW_025316694.1 Primary Assembly 1221047 na contig16 unplaced-scaffold na na CAJVBL010000016.1 = NW_025316695.1 Primary Assembly 1194370 na contig17 unplaced-scaffold na na CAJVBL010000017.1 = NW_025316696.1 Primary Assembly 1175428 na contig18 unplaced-scaffold na na CAJVBL010000018.1 = NW_025316697.1 Primary Assembly 1070272 na contig19 unplaced-scaffold na na CAJVBL010000019.1 = NW_025316698.1 Primary Assembly 1019006 na contig20 unplaced-scaffold na na CAJVBL010000020.1 = NW_025316699.1 Primary Assembly 956021 na contig21 unplaced-scaffold na na CAJVBL010000021.1 = NW_025316700.1 Primary Assembly 892783 na contig22 unplaced-scaffold na na CAJVBL010000022.1 = NW_025316701.1 Primary Assembly 864120 na contig23 unplaced-scaffold na na CAJVBL010000023.1 = NW_025316702.1 Primary Assembly 861937 na contig24 unplaced-scaffold na na CAJVBL010000024.1 = NW_025316703.1 Primary Assembly 836184 na contig25 unplaced-scaffold na na CAJVBL010000025.1 = NW_025316704.1 Primary Assembly 729980 na contig26 unplaced-scaffold na na CAJVBL010000026.1 = NW_025316705.1 Primary Assembly 676034 na contig27 unplaced-scaffold na na CAJVBL010000027.1 = NW_025316706.1 Primary Assembly 659754 na contig28 unplaced-scaffold na na CAJVBL010000028.1 = NW_025316707.1 Primary Assembly 650361 na contig29 unplaced-scaffold na na CAJVBL010000029.1 = NW_025316708.1 Primary Assembly 621113 na contig30 unplaced-scaffold na na CAJVBL010000030.1 = NW_025316709.1 Primary Assembly 614000 na contig31 unplaced-scaffold na na CAJVBL010000031.1 = NW_025316710.1 Primary Assembly 582882 na contig32 unplaced-scaffold na na CAJVBL010000032.1 = NW_025316711.1 Primary Assembly 579436 na contig33 unplaced-scaffold na na CAJVBL010000033.1 = NW_025316712.1 Primary Assembly 492300 na contig34 unplaced-scaffold na na CAJVBL010000034.1 = NW_025316713.1 Primary Assembly 487068 na contig35 unplaced-scaffold na na CAJVBL010000035.1 = NW_025316714.1 Primary Assembly 484273 na contig36 unplaced-scaffold na na CAJVBL010000036.1 = NW_025316715.1 Primary Assembly 483542 na contig37 unplaced-scaffold na na CAJVBL010000037.1 = NW_025316716.1 Primary Assembly 482681 na contig38 unplaced-scaffold na na CAJVBL010000038.1 = NW_025316717.1 Primary Assembly 470945 na contig39 unplaced-scaffold na na CAJVBL010000039.1 = NW_025316718.1 Primary Assembly 470283 na contig40 unplaced-scaffold na na CAJVBL010000040.1 = NW_025316719.1 Primary Assembly 456138 na contig41 unplaced-scaffold na na CAJVBL010000041.1 = NW_025316720.1 Primary Assembly 455225 na contig42 unplaced-scaffold na na CAJVBL010000042.1 = NW_025316721.1 Primary Assembly 442636 na contig43 unplaced-scaffold na na CAJVBL010000043.1 = NW_025316722.1 Primary Assembly 434874 na contig44 unplaced-scaffold na na CAJVBL010000044.1 = NW_025316723.1 Primary Assembly 417510 na contig45 unplaced-scaffold na na CAJVBL010000045.1 = NW_025316724.1 Primary Assembly 412351 na contig46 unplaced-scaffold na na CAJVBL010000046.1 = NW_025316725.1 Primary Assembly 411595 na contig47 unplaced-scaffold na na CAJVBL010000047.1 = NW_025316726.1 Primary Assembly 398157 na contig48 unplaced-scaffold na na CAJVBL010000048.1 = NW_025316727.1 Primary Assembly 396693 na contig49 unplaced-scaffold na na CAJVBL010000049.1 = NW_025316728.1 Primary Assembly 394764 na contig50 unplaced-scaffold na na CAJVBL010000050.1 = NW_025316729.1 Primary Assembly 392191 na contig51 unplaced-scaffold na na CAJVBL010000051.1 = NW_025316730.1 Primary Assembly 389467 na contig52 unplaced-scaffold na na CAJVBL010000052.1 = NW_025316731.1 Primary Assembly 383441 na contig53 unplaced-scaffold na na CAJVBL010000053.1 = NW_025316732.1 Primary Assembly 374843 na contig54 unplaced-scaffold na na CAJVBL010000054.1 = NW_025316733.1 Primary Assembly 374636 na contig55 unplaced-scaffold na na CAJVBL010000055.1 = NW_025316734.1 Primary Assembly 367759 na contig56 unplaced-scaffold na na CAJVBL010000056.1 = NW_025316735.1 Primary Assembly 363279 na contig57 unplaced-scaffold na na CAJVBL010000057.1 = NW_025316736.1 Primary Assembly 361713 na contig58 unplaced-scaffold na na CAJVBL010000058.1 = NW_025316737.1 Primary Assembly 354334 na contig59 unplaced-scaffold na na CAJVBL010000059.1 = NW_025316738.1 Primary Assembly 352372 na contig60 unplaced-scaffold na na CAJVBL010000060.1 = NW_025316739.1 Primary Assembly 321715 na contig61 unplaced-scaffold na na CAJVBL010000061.1 = NW_025316740.1 Primary Assembly 298979 na contig62 unplaced-scaffold na na CAJVBL010000062.1 = NW_025316741.1 Primary Assembly 296950 na contig63 unplaced-scaffold na na CAJVBL010000063.1 = NW_025316742.1 Primary Assembly 290330 na contig64 unplaced-scaffold na na CAJVBL010000064.1 = NW_025316743.1 Primary Assembly 265520 na contig65 unplaced-scaffold na na CAJVBL010000065.1 = NW_025316744.1 Primary Assembly 255478 na contig66 unplaced-scaffold na na CAJVBL010000066.1 = NW_025316745.1 Primary Assembly 251768 na contig67 unplaced-scaffold na na CAJVBL010000067.1 = NW_025316746.1 Primary Assembly 231303 na contig68 unplaced-scaffold na na CAJVBL010000068.1 = NW_025316747.1 Primary Assembly 204466 na contig69 unplaced-scaffold na na CAJVBL010000069.1 = NW_025316748.1 Primary Assembly 199988 na contig70 unplaced-scaffold na na CAJVBL010000070.1 = NW_025316749.1 Primary Assembly 198350 na contig71 unplaced-scaffold na na CAJVBL010000071.1 = NW_025316750.1 Primary Assembly 186932 na contig72 unplaced-scaffold na na CAJVBL010000072.1 = NW_025316751.1 Primary Assembly 168988 na contig73 unplaced-scaffold na na CAJVBL010000073.1 = NW_025316752.1 Primary Assembly 163703 na contig74 unplaced-scaffold na na CAJVBL010000074.1 = NW_025316753.1 Primary Assembly 158421 na contig75 unplaced-scaffold na na CAJVBL010000075.1 = NW_025316754.1 Primary Assembly 156746 na contig76 unplaced-scaffold na na CAJVBL010000076.1 = NW_025316755.1 Primary Assembly 155311 na contig77 unplaced-scaffold na na CAJVBL010000077.1 = NW_025316756.1 Primary Assembly 133705 na contig78 unplaced-scaffold na na CAJVBL010000078.1 = NW_025316757.1 Primary Assembly 111872 na contig79 unplaced-scaffold na na CAJVBL010000079.1 = NW_025316758.1 Primary Assembly 101120 na contig80 unplaced-scaffold na na CAJVBL010000080.1 = NW_025316759.1 Primary Assembly 91652 na contig81 unplaced-scaffold na na CAJVBL010000081.1 = NW_025316760.1 Primary Assembly 78777 na contig82 unplaced-scaffold na na CAJVBL010000082.1 = NW_025316761.1 Primary Assembly 77570 na contig83 unplaced-scaffold na na CAJVBL010000083.1 = NW_025316762.1 Primary Assembly 75109 na contig84 unplaced-scaffold na na CAJVBL010000084.1 = NW_025316763.1 Primary Assembly 63625 na contig85 unplaced-scaffold na na CAJVBL010000085.1 = NW_025316764.1 Primary Assembly 61024 na contig86 unplaced-scaffold na na CAJVBL010000086.1 = NW_025316765.1 Primary Assembly 60532 na contig87 unplaced-scaffold na na CAJVBL010000087.1 = NW_025316766.1 Primary Assembly 55553 na contig88 unplaced-scaffold na na CAJVBL010000088.1 = NW_025316767.1 Primary Assembly 52418 na contig89 unplaced-scaffold na na CAJVBL010000089.1 = NW_025316768.1 Primary Assembly 46241 na contig90 unplaced-scaffold na na CAJVBL010000090.1 = NW_025316769.1 Primary Assembly 43322 na contig91 unplaced-scaffold na na CAJVBL010000091.1 = NW_025316770.1 Primary Assembly 41430 na contig92 unplaced-scaffold na na CAJVBL010000092.1 = NW_025316771.1 Primary Assembly 28187 na contig93 unplaced-scaffold na na CAJVBL010000093.1 = NW_025316772.1 Primary Assembly 26774 na contig94 unplaced-scaffold na na CAJVBL010000094.1 = NW_025316773.1 Primary Assembly 26757 na contig95 unplaced-scaffold na na CAJVBL010000095.1 = NW_025316774.1 Primary Assembly 25192 na contig96 unplaced-scaffold na na CAJVBL010000096.1 = NW_025316775.1 Primary Assembly 24354 na contig97 unplaced-scaffold na na CAJVBL010000097.1 = NW_025316776.1 Primary Assembly 21060 na contig98 unplaced-scaffold na na CAJVBL010000098.1 = NW_025316777.1 Primary Assembly 19666 na contig99 unplaced-scaffold na na CAJVBL010000099.1 = NW_025316778.1 Primary Assembly 16426 na contig100 unplaced-scaffold na na CAJVBL010000100.1 = NW_025316779.1 Primary Assembly 8708792 na contig101 unplaced-scaffold na na CAJVBL010000101.1 = NW_025316780.1 Primary Assembly 7995111 na contig102 unplaced-scaffold na na CAJVBL010000102.1 = NW_025316781.1 Primary Assembly 5746495 na contig103 unplaced-scaffold na na CAJVBL010000103.1 = NW_025316782.1 Primary Assembly 5427215 na contig104 unplaced-scaffold na na CAJVBL010000104.1 = NW_025316783.1 Primary Assembly 4252097 na contig105 unplaced-scaffold na na CAJVBL010000105.1 = NW_025316784.1 Primary Assembly 4199490 na contig106 unplaced-scaffold na na CAJVBL010000106.1 = NW_025316785.1 Primary Assembly 3909593 na contig107 unplaced-scaffold na na CAJVBL010000107.1 = NW_025316786.1 Primary Assembly 3495786 na contig108 unplaced-scaffold na na CAJVBL010000108.1 = NW_025316787.1 Primary Assembly 3440446 na contig109 unplaced-scaffold na na CAJVBL010000109.1 = NW_025316788.1 Primary Assembly 3438906 na contig110 unplaced-scaffold na na CAJVBL010000110.1 = NW_025316789.1 Primary Assembly 2825162 na scaffold_MT assembled-molecule MT Mitochondrion OU343111.1 <> na non-nuclear 16353 na