hub GCF_905367715.1 genome assembly shortLabel Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis 2021 longLabel Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis 2021/Xanthomonas arboricola pv. juglandis/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2 genome assembly useOneFile on email genome-www@soe.ucsc.edu descriptionUrl html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.description.html genome GCF_905367715.1 taxId 195709 groups groups.txt description Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis 2021 twoBitPath GCF_905367715.1.2bit twoBitBptUrl GCF_905367715.1.2bit.bpt chromSizes GCF_905367715.1.chrom.sizes.txt chromAliasBb GCF_905367715.1.chromAlias.bb chromAuthority ucsc organism Xanthomonas_sp._CPBF_1494_hybrid_assembly_2 Mar. 2021 defaultPos NZ_HG999362.1:1665954-1675954 scientificName Xanthomonas arboricola pv. juglandis htmlPath html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/905/367/715/GCF_905367715.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/905/367/715/GCF_905367715.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/905/367/715/GCF_905367715.1 track assembly longLabel Assembly shortLabel Assembly visibility hide colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.assembly.bb type bigBed 6 html html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.assembly searchIndex name searchTrix ixIxx/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility dense autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.gc5Base.bw html html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.tandemDups.bb type bigBed 12 track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.simpleRepeat.bb html html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.simpleRepeat track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.ncbiGene.bb type bigGenePred urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$" html html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.ncbiGene searchIndex name searchTrix ixIxx/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.ncbiGene.ix urlLabel Entrez gene: labelFields name,geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility dense type bigBed 4 + html html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.windowMasker.bb html html/GCF_905367715.1_Xanthomonas_sp._CPBF_1494_hybrid_assembly_2.windowMasker