# Assembly name: fTraTra1.2 # Organism name: Trachurus trachurus (Atlantic horse mackerel) # Taxid: 36212 # BioSample: SAMEA7524396 # BioProject: PRJEB42172 # Submitter: Wellcome Sanger Institute # Date: 2021-01-27 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAJIMH02 # Assembly method: various # Genome coverage: 105x # Sequencing technology: PacBio,Illumina,Arima # RefSeq category: Reference Genome # GenBank assembly accession: GCA_905171665.2 # RefSeq assembly accession: GCF_905171665.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_905171655.2 (alternate pseudohaplotype of diploid) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome LR991628.1 = NC_139891.1 Primary Assembly 40754244 na SUPER_2 assembled-molecule 2 Chromosome LR991651.1 = NC_139914.1 Primary Assembly 15468355 na SUPER_3 assembled-molecule 3 Chromosome LR991630.1 = NC_139893.1 Primary Assembly 40663798 na SUPER_4 assembled-molecule 4 Chromosome LR991635.1 = NC_139898.1 Primary Assembly 36093002 na SUPER_5 assembled-molecule 5 Chromosome LR991633.1 = NC_139896.1 Primary Assembly 36888734 na SUPER_6 assembled-molecule 6 Chromosome LR991634.1 = NC_139897.1 Primary Assembly 36283071 na SUPER_7 assembled-molecule 7 Chromosome LR991638.1 = NC_139901.1 Primary Assembly 35447499 na SUPER_8 assembled-molecule 8 Chromosome LR991642.1 = NC_139905.1 Primary Assembly 33049929 na SUPER_9 assembled-molecule 9 Chromosome LR991632.1 = NC_139895.1 Primary Assembly 37400736 na SUPER_10 assembled-molecule 10 Chromosome LR991631.1 = NC_139894.1 Primary Assembly 38572790 na SUPER_11 assembled-molecule 11 Chromosome LR991641.1 = NC_139904.1 Primary Assembly 33386963 na SUPER_12 assembled-molecule 12 Chromosome LR991645.1 = NC_139908.1 Primary Assembly 29584266 na SUPER_13 assembled-molecule 13 Chromosome LR991629.1 = NC_139892.1 Primary Assembly 40695139 na SUPER_14 assembled-molecule 14 Chromosome LR991640.1 = NC_139903.1 Primary Assembly 33713437 na SUPER_15 assembled-molecule 15 Chromosome LR991643.1 = NC_139906.1 Primary Assembly 31049438 na SUPER_16 assembled-molecule 16 Chromosome LR991639.1 = NC_139902.1 Primary Assembly 35009248 na SUPER_17 assembled-molecule 17 Chromosome LR991637.1 = NC_139900.1 Primary Assembly 35709794 na SUPER_18 assembled-molecule 18 Chromosome LR991646.1 = NC_139909.1 Primary Assembly 29245829 na SUPER_19 assembled-molecule 19 Chromosome LR991650.1 = NC_139913.1 Primary Assembly 25328826 na SUPER_20 assembled-molecule 20 Chromosome LR991648.1 = NC_139911.1 Primary Assembly 25462409 na SUPER_21 assembled-molecule 21 Chromosome LR991636.1 = NC_139899.1 Primary Assembly 35833567 na SUPER_22 assembled-molecule 22 Chromosome LR991644.1 = NC_139907.1 Primary Assembly 30602059 na SUPER_23 assembled-molecule 23 Chromosome LR991649.1 = NC_139912.1 Primary Assembly 25353499 na SUPER_24 assembled-molecule 24 Chromosome LR991647.1 = NC_139910.1 Primary Assembly 29127247 na contig1 unplaced-scaffold na na CAJIMH020000001.1 = NW_028155246.1 Primary Assembly 348724 na contig2 unplaced-scaffold na na CAJIMH020000002.1 = NW_028155245.1 Primary Assembly 290645 na contig3 unplaced-scaffold na na CAJIMH020000003.1 = NW_028155244.1 Primary Assembly 267628 na contig4 unplaced-scaffold na na CAJIMH020000004.1 = NW_028155243.1 Primary Assembly 249848 na contig5 unplaced-scaffold na na CAJIMH020000005.1 = NW_028155242.1 Primary Assembly 201419 na contig6 unplaced-scaffold na na CAJIMH020000006.1 = NW_028155241.1 Primary Assembly 198714 na contig7 unplaced-scaffold na na CAJIMH020000007.1 = NW_028155240.1 Primary Assembly 194557 na contig8 unplaced-scaffold na na CAJIMH020000008.1 = NW_028155239.1 Primary Assembly 188453 na contig9 unplaced-scaffold na na CAJIMH020000009.1 = NW_028155238.1 Primary Assembly 173841 na contig10 unplaced-scaffold na na CAJIMH020000010.1 = NW_028155237.1 Primary Assembly 167942 na contig11 unplaced-scaffold na na CAJIMH020000011.1 = NW_028155236.1 Primary Assembly 153739 na contig12 unplaced-scaffold na na CAJIMH020000012.1 = NW_028155235.1 Primary Assembly 139074 na contig13 unplaced-scaffold na na CAJIMH020000013.1 = NW_028155234.1 Primary Assembly 135232 na contig14 unplaced-scaffold na na CAJIMH020000014.1 = NW_028155233.1 Primary Assembly 132338 na contig15 unplaced-scaffold na na CAJIMH020000015.1 = NW_028155232.1 Primary Assembly 132290 na contig16 unplaced-scaffold na na CAJIMH020000016.1 = NW_028155231.1 Primary Assembly 119305 na contig17 unplaced-scaffold na na CAJIMH020000017.1 = NW_028155230.1 Primary Assembly 116709 na contig18 unplaced-scaffold na na CAJIMH020000018.1 = NW_028155229.1 Primary Assembly 112556 na contig19 unplaced-scaffold na na CAJIMH020000019.1 = NW_028155228.1 Primary Assembly 112208 na contig20 unplaced-scaffold na na CAJIMH020000020.1 = NW_028155227.1 Primary Assembly 112180 na contig21 unplaced-scaffold na na CAJIMH020000021.1 = NW_028155226.1 Primary Assembly 110550 na contig22 unplaced-scaffold na na CAJIMH020000022.1 = NW_028155225.1 Primary Assembly 108722 na contig23 unplaced-scaffold na na CAJIMH020000023.1 = NW_028155224.1 Primary Assembly 107612 na contig24 unplaced-scaffold na na CAJIMH020000024.1 = NW_028155223.1 Primary Assembly 106395 na contig25 unplaced-scaffold na na CAJIMH020000025.1 = NW_028155222.1 Primary Assembly 104180 na contig26 unplaced-scaffold na na CAJIMH020000026.1 = NW_028155221.1 Primary Assembly 101549 na contig27 unplaced-scaffold na na CAJIMH020000027.1 = NW_028155220.1 Primary Assembly 101284 na contig28 unplaced-scaffold na na CAJIMH020000028.1 = NW_028155219.1 Primary Assembly 99469 na contig29 unplaced-scaffold na na CAJIMH020000029.1 = NW_028155218.1 Primary Assembly 98366 na contig30 unplaced-scaffold na na CAJIMH020000030.1 = NW_028155217.1 Primary Assembly 96375 na contig31 unplaced-scaffold na na CAJIMH020000031.1 = NW_028155216.1 Primary Assembly 95307 na contig32 unplaced-scaffold na na CAJIMH020000032.1 = NW_028155215.1 Primary Assembly 94408 na contig33 unplaced-scaffold na na CAJIMH020000033.1 = NW_028155214.1 Primary Assembly 93761 na contig34 unplaced-scaffold na na CAJIMH020000034.1 = NW_028155213.1 Primary Assembly 93529 na contig35 unplaced-scaffold na na CAJIMH020000035.1 = NW_028155212.1 Primary Assembly 90609 na contig36 unplaced-scaffold na na CAJIMH020000036.1 = NW_028155211.1 Primary Assembly 90036 na contig37 unplaced-scaffold na na CAJIMH020000037.1 = NW_028155210.1 Primary Assembly 88684 na contig38 unplaced-scaffold na na CAJIMH020000038.1 = NW_028155209.1 Primary Assembly 88666 na contig39 unplaced-scaffold na na CAJIMH020000039.1 = NW_028155208.1 Primary Assembly 79199 na contig40 unplaced-scaffold na na CAJIMH020000040.1 = NW_028155207.1 Primary Assembly 79158 na contig41 unplaced-scaffold na na CAJIMH020000041.1 = NW_028155206.1 Primary Assembly 78305 na contig42 unplaced-scaffold na na CAJIMH020000042.1 = NW_028155205.1 Primary Assembly 77602 na contig43 unplaced-scaffold na na CAJIMH020000043.1 = NW_028155204.1 Primary Assembly 76529 na contig44 unplaced-scaffold na na CAJIMH020000044.1 = NW_028155203.1 Primary Assembly 73890 na contig45 unplaced-scaffold na na CAJIMH020000045.1 = NW_028155202.1 Primary Assembly 74925 na contig46 unplaced-scaffold na na CAJIMH020000046.1 = NW_028155201.1 Primary Assembly 72304 na contig47 unplaced-scaffold na na CAJIMH020000047.1 = NW_028155200.1 Primary Assembly 70644 na contig48 unplaced-scaffold na na CAJIMH020000048.1 = NW_028155199.1 Primary Assembly 68434 na contig49 unplaced-scaffold na na CAJIMH020000049.1 = NW_028155198.1 Primary Assembly 65915 na contig50 unplaced-scaffold na na CAJIMH020000050.1 = NW_028155197.1 Primary Assembly 65112 na contig51 unplaced-scaffold na na CAJIMH020000051.1 = NW_028155196.1 Primary Assembly 63883 na contig52 unplaced-scaffold na na CAJIMH020000052.1 = NW_028155195.1 Primary Assembly 62391 na contig53 unplaced-scaffold na na CAJIMH020000053.1 = NW_028155194.1 Primary Assembly 62290 na contig54 unplaced-scaffold na na CAJIMH020000054.1 = NW_028155193.1 Primary Assembly 62510 na contig55 unplaced-scaffold na na CAJIMH020000055.1 = NW_028155192.1 Primary Assembly 60621 na contig56 unplaced-scaffold na na CAJIMH020000056.1 = NW_028155191.1 Primary Assembly 59952 na contig57 unplaced-scaffold na na CAJIMH020000057.1 = NW_028155190.1 Primary Assembly 58667 na contig58 unplaced-scaffold na na CAJIMH020000058.1 = NW_028155189.1 Primary Assembly 57176 na contig59 unplaced-scaffold na na CAJIMH020000059.1 = NW_028155188.1 Primary Assembly 57052 na contig60 unplaced-scaffold na na CAJIMH020000060.1 = NW_028155187.1 Primary Assembly 56724 na contig61 unplaced-scaffold na na CAJIMH020000061.1 = NW_028155186.1 Primary Assembly 56191 na contig62 unplaced-scaffold na na CAJIMH020000062.1 = NW_028155185.1 Primary Assembly 55119 na contig63 unplaced-scaffold na na CAJIMH020000063.1 = NW_028155184.1 Primary Assembly 54578 na contig64 unplaced-scaffold na na CAJIMH020000064.1 = NW_028155183.1 Primary Assembly 54063 na contig65 unplaced-scaffold na na CAJIMH020000065.1 = NW_028155182.1 Primary Assembly 53918 na contig66 unplaced-scaffold na na CAJIMH020000066.1 = NW_028155181.1 Primary Assembly 46342 na contig67 unplaced-scaffold na na CAJIMH020000067.1 = NW_028155180.1 Primary Assembly 53790 na contig68 unplaced-scaffold na na CAJIMH020000068.1 = NW_028155179.1 Primary Assembly 51701 na contig69 unplaced-scaffold na na CAJIMH020000069.1 = NW_028155178.1 Primary Assembly 51516 na contig70 unplaced-scaffold na na CAJIMH020000070.1 = NW_028155177.1 Primary Assembly 51142 na contig71 unplaced-scaffold na na CAJIMH020000071.1 = NW_028155176.1 Primary Assembly 50290 na contig72 unplaced-scaffold na na CAJIMH020000072.1 = NW_028155175.1 Primary Assembly 49778 na contig73 unplaced-scaffold na na CAJIMH020000073.1 = NW_028155174.1 Primary Assembly 48866 na contig74 unplaced-scaffold na na CAJIMH020000074.1 = NW_028155173.1 Primary Assembly 46869 na contig75 unplaced-scaffold na na CAJIMH020000075.1 = NW_028155172.1 Primary Assembly 46225 na contig76 unplaced-scaffold na na CAJIMH020000076.1 = NW_028155171.1 Primary Assembly 45989 na contig77 unplaced-scaffold na na CAJIMH020000077.1 = NW_028155170.1 Primary Assembly 45691 na contig78 unplaced-scaffold na na CAJIMH020000078.1 = NW_028155169.1 Primary Assembly 43581 na contig79 unplaced-scaffold na na CAJIMH020000079.1 = NW_028155168.1 Primary Assembly 43488 na contig80 unplaced-scaffold na na CAJIMH020000080.1 = NW_028155167.1 Primary Assembly 43561 na contig81 unplaced-scaffold na na CAJIMH020000081.1 = NW_028155166.1 Primary Assembly 43128 na contig82 unplaced-scaffold na na CAJIMH020000082.1 = NW_028155165.1 Primary Assembly 43095 na contig83 unplaced-scaffold na na CAJIMH020000083.1 = NW_028155164.1 Primary Assembly 42685 na contig84 unplaced-scaffold na na CAJIMH020000084.1 = NW_028155163.1 Primary Assembly 41429 na contig85 unplaced-scaffold na na CAJIMH020000085.1 = NW_028155162.1 Primary Assembly 41331 na contig86 unplaced-scaffold na na CAJIMH020000086.1 = NW_028155161.1 Primary Assembly 41511 na contig87 unplaced-scaffold na na CAJIMH020000087.1 = NW_028155160.1 Primary Assembly 41128 na contig88 unplaced-scaffold na na CAJIMH020000088.1 = NW_028155159.1 Primary Assembly 41165 na contig89 unplaced-scaffold na na CAJIMH020000089.1 = NW_028155158.1 Primary Assembly 40735 na contig90 unplaced-scaffold na na CAJIMH020000090.1 = NW_028155157.1 Primary Assembly 39543 na contig91 unplaced-scaffold na na CAJIMH020000091.1 = NW_028155156.1 Primary Assembly 38965 na contig92 unplaced-scaffold na na CAJIMH020000092.1 = NW_028155155.1 Primary Assembly 38663 na contig93 unplaced-scaffold na na CAJIMH020000093.1 = NW_028155154.1 Primary Assembly 38565 na contig94 unplaced-scaffold na na CAJIMH020000094.1 = NW_028155153.1 Primary Assembly 37383 na contig95 unplaced-scaffold na na CAJIMH020000095.1 = NW_028155152.1 Primary Assembly 37228 na contig96 unplaced-scaffold na na CAJIMH020000096.1 = NW_028155151.1 Primary Assembly 36497 na contig97 unplaced-scaffold na na CAJIMH020000097.1 = NW_028155150.1 Primary Assembly 35406 na contig98 unplaced-scaffold na na CAJIMH020000098.1 = NW_028155149.1 Primary Assembly 35435 na contig99 unplaced-scaffold na na CAJIMH020000099.1 = NW_028155148.1 Primary Assembly 35093 na contig100 unplaced-scaffold na na CAJIMH020000100.1 = NW_028155147.1 Primary Assembly 34932 na contig101 unplaced-scaffold na na CAJIMH020000101.1 = NW_028155146.1 Primary Assembly 35015 na contig102 unplaced-scaffold na na CAJIMH020000102.1 = NW_028155145.1 Primary Assembly 34568 na contig103 unplaced-scaffold na na CAJIMH020000103.1 = NW_028155144.1 Primary Assembly 34416 na contig104 unplaced-scaffold na na CAJIMH020000104.1 = NW_028155143.1 Primary Assembly 33988 na contig105 unplaced-scaffold na na CAJIMH020000105.1 = NW_028155142.1 Primary Assembly 33186 na contig106 unplaced-scaffold na na CAJIMH020000106.1 = NW_028155141.1 Primary Assembly 32578 na contig107 unplaced-scaffold na na CAJIMH020000107.1 = NW_028155140.1 Primary Assembly 31926 na contig108 unplaced-scaffold na na CAJIMH020000108.1 = NW_028155139.1 Primary Assembly 31669 na contig109 unplaced-scaffold na na CAJIMH020000109.1 = NW_028155138.1 Primary Assembly 31052 na contig110 unplaced-scaffold na na CAJIMH020000110.1 = NW_028155137.1 Primary Assembly 30086 na contig111 unplaced-scaffold na na CAJIMH020000111.1 = NW_028155136.1 Primary Assembly 29089 na contig112 unplaced-scaffold na na CAJIMH020000112.1 = NW_028155135.1 Primary Assembly 28740 na contig113 unplaced-scaffold na na CAJIMH020000113.1 = NW_028155134.1 Primary Assembly 28713 na contig114 unplaced-scaffold na na CAJIMH020000114.1 = NW_028155133.1 Primary Assembly 28269 na contig115 unplaced-scaffold na na CAJIMH020000115.1 = NW_028155132.1 Primary Assembly 27400 na contig116 unplaced-scaffold na na CAJIMH020000116.1 = NW_028155131.1 Primary Assembly 26972 na contig117 unplaced-scaffold na na CAJIMH020000117.1 = NW_028155130.1 Primary Assembly 26919 na contig118 unplaced-scaffold na na CAJIMH020000118.1 = NW_028155129.1 Primary Assembly 26297 na contig119 unplaced-scaffold na na CAJIMH020000119.1 = NW_028155128.1 Primary Assembly 23073 na contig120 unplaced-scaffold na na CAJIMH020000120.1 = NW_028155127.1 Primary Assembly 22818 na contig121 unplaced-scaffold na na CAJIMH020000121.1 = NW_028155126.1 Primary Assembly 22680 na contig122 unplaced-scaffold na na CAJIMH020000122.1 = NW_028155125.1 Primary Assembly 18133 na contig123 unplaced-scaffold na na CAJIMH020000123.1 = NW_028155124.1 Primary Assembly 17600 na contig124 unplaced-scaffold na na CAJIMH020000124.1 = NW_028155123.1 Primary Assembly 11117 na contig125 unplaced-scaffold na na CAJIMH020000125.1 = NW_028155122.1 Primary Assembly 9798 na contig126 unplaced-scaffold na na CAJIMH020000126.1 = NW_028155121.1 Primary Assembly 247025 na contig127 unplaced-scaffold na na CAJIMH020000127.1 = NW_028155120.1 Primary Assembly 526359 na contig128 unplaced-scaffold na na CAJIMH020000128.1 = NW_028155119.1 Primary Assembly 477214 na scaffold_MT assembled-molecule MT Mitochondrion LR991652.1 <> na non-nuclear 16561 na