track uniprot
html contrib/uniprot/uniprot
dataVersion UniProt Knowledgebase Release 2026_03, mapped to genome through gene transcripts from ncbiRefSeq 2025-06-06 on 2026-09-24 (taxId 181472, 82dc818ebe)
shortLabel UniProt 2026_03
longLabel UniProt SwissProt/TrEMBL Protein Annotations, release 2026_03
visibility hide
type bigBed 12 +
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compositeTrack on
allButtonPair on
mouseOverField comments
urls uniProtId="http://www.uniprot.org/uniprot/$$#section_features" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
itemRgb on
hideEmptySubtracks on

        track unipAliSwissprot
        shortLabel SwissProt Aln.
        longLabel UCSC alignment of SwissProt proteins to genome - 2026_03
        priority 1
        parent uniprot
        visibility hide
        type bigPsl
        bigDataUrl contrib/uniprot/unipAliSwissprot.bb
        searchIndex name,acc
        urls acc="http://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" 
        labelFields acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt,uniprotName
        mouseOverField protFullNames
        itemRgb off
        color 2,12,120
        indelDoubleInsert on
        indelQueryInsert on
        baseColorTickColor contrastingColor
        baseColorUseCds given
        baseColorDefault genomicCodons
        showDiffBasesAllScales on

        track unipAliTrembl
        shortLabel TrEMBL Aln.
        longLabel UCSC alignment of TrEMBL proteins to genome - 2026_03
        priority 2
        parent uniprot
        visibility dense
        type bigPsl
        bigDataUrl contrib/uniprot/unipAliTrembl.bb
        searchIndex name,acc
        urls acc="http://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" 
        labelFields acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt,uniprotName
        mouseOverField protFullNames
        itemRgb off
        color 0,150,250
        indelDoubleInsert on
        indelQueryInsert on
        baseColorTickColor contrastingColor
        baseColorUseCds given
        baseColorDefault genomicCodons
        showDiffBasesAllScales on

        track unipLocSignal
        shortLabel Signal Peptide
        longLabel UniProt Signal Peptides - 2026_03
        priority 3
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipLocSignal.bb
        color 255,0,150
        itemRgb off
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipLocExtra
        shortLabel Extracellular
        longLabel UniProt Extracellular Domain - 2026_03
        priority 4
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipLocExtra.bb
        color 0,150,255
        itemRgb off
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipLocTransMemb
        shortLabel Transmembrane
        longLabel UniProt Transmembrane Domains - 2026_03
        priority 5
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipLocTransMemb.bb
        color 0,150,0
        itemRgb off
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipLocCytopl
        shortLabel Cytoplasmic
        longLabel UniProt Cytoplasmic Domains - 2026_03
        priority 6
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipLocCytopl.bb
        color 255,150,0
        itemRgb off
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipChain
        shortLabel Chains
        longLabel UniProt Mature Protein Products (Polypeptide Chains) - 2026_03
        priority 7
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipChain.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#ptm_processing" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipInterest
        shortLabel Interest
        longLabel UniProt Regions of Interest - 2026_03
        priority 4
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipInterest.bb
        itemRgb off
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipDomain
        shortLabel Domains
        longLabel UniProt Domains - 2026_03
        priority 8
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipDomain.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipDisulfBond
        shortLabel Disulf. Bonds
        longLabel UniProt Disulfide Bonds - 2026_03
        priority 8
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipDisulfBond.bb
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipModif
        shortLabel AA Modifications
        longLabel UniProt Amino Acid Modifications - 2026_03
        priority 9
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipModif.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#aaMod_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipMut
        shortLabel Mutations
        longLabel UniProt Amino Acid Mutations - 2026_03
        priority 10
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipMut.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#pathology_and_biotech" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" variationId="http://www.uniprot.org/uniprot/$$"

        track unipStruct
        shortLabel Structure
        longLabel UniProt Protein Primary/Secondary Structure Annotations - 2026_03
        priority 11
        parent uniprot
        visibility hide
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipStruct.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#structure" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipOther
        shortLabel Other Annot.
        longLabel UniProt Other Annotations - 2026_03
        priority 11
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipOther.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipRepeat
        shortLabel Repeats
        longLabel UniProt Repeats - 2026_03
        priority 12
        parent uniprot
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipRepeat.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipConflict
        shortLabel Seq. Conflicts
        longLabel UniProt Sequence Conflicts - 2026_03
        priority 13
        parent uniprot off
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipConflict.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#Sequence_conflict_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)

        track unipSplice
        shortLabel Splice Variants
        longLabel UniProt Splice Variants - 2026_03
        priority 14
        parent uniprot off
        visibility dense
        type bigBed 12 +
        bigDataUrl contrib/uniprot/unipSplice.bb
        urls uniProtId="http://www.uniprot.org/uniprot/$$#sequences" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
        filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)