RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.4SWv5G/RM_14000.TueJun251729072024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1719361747
Database = /dev/shm/rModeler.4SWv5G/GCF_900092465.1_Lpm7613_v1   - Sequences = 2
  - Bases = 3391443
Storage Throughput = excellent ( 1007.05 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 3391322 bp ( 3391322 non ambiguous )
   - Num Contigs Represented = 2
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:02:19 (hh:mm:ss) Elapsed Time
Round Time: 00:02:31 (hh:mm:ss) Elapsed Time : 4 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       139 repeats masked totaling 13716 bp(s).
   - TE Masking time 00:00:02 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 3391322 bp
       Num Contigs Represented = 2
       Non ambiguous bp:
             Initial: 3391322 bp
             After Masking: 3375030 bp
             Masked: 0.48 % 
 -- Input Database Coverage: 3391322 bp out of 3391443 bp ( 100.00 % )
Sampling Time: 00:00:07 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 3655
Comparison Time: 00:01:12 (hh:mm:ss) Elapsed Time, 691 HSPs Collected
Number of families returned by RECON: 269
Round Time: 00:01:29 (hh:mm:ss) Elapsed Time : 0 families discovered.

RepeatScout/RECON discovery complete: 4 families found


Classification Time: 00:00:05 (hh:mm:ss) Elapsed Time


Program Time: 00:04:05 (hh:mm:ss) Elapsed Time