# Assembly name: ASM5964141v1 # Organism name: Vibrio rubrogenes (g-proteobacteria) # Infraspecific name: strain=smcift-1 # Taxid: 3413504 # BioSample: SAMN47543877 # BioProject: PRJNA1240948 # Submitter: ICAR-Central Institute of Fisheries Technology, Cochin # Date: 2026-07-28 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JCARSY01 # Assembly method: SPAdes v. v 1.13.4 # Expected final version: Yes # Genome coverage: 12.0x # Sequencing technology: iIIumiaHiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_059641415.1 # RefSeq assembly accession: GCF_059641415.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Unit names: ## Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name seaweed_contig_1 unplaced-scaffold na na JCARSY010000001.1 = NZ_JCARSY010000001.1 Primary Assembly 462086 na seaweed_contig_2 unplaced-scaffold na na JCARSY010000002.1 = NZ_JCARSY010000002.1 Primary Assembly 272227 na seaweed_contig_3 unplaced-scaffold na na JCARSY010000003.1 = NZ_JCARSY010000003.1 Primary Assembly 250965 na seaweed_contig_4 unplaced-scaffold na na JCARSY010000004.1 = NZ_JCARSY010000004.1 Primary Assembly 186981 na seaweed_contig_5 unplaced-scaffold na na JCARSY010000005.1 = NZ_JCARSY010000005.1 Primary Assembly 175616 na seaweed_contig_6 unplaced-scaffold na na JCARSY010000006.1 = NZ_JCARSY010000006.1 Primary Assembly 174265 na seaweed_contig_7 unplaced-scaffold na na JCARSY010000007.1 = NZ_JCARSY010000007.1 Primary Assembly 172648 na seaweed_contig_8 unplaced-scaffold na na JCARSY010000008.1 = NZ_JCARSY010000008.1 Primary Assembly 172211 na seaweed_contig_9 unplaced-scaffold na na JCARSY010000009.1 = NZ_JCARSY010000009.1 Primary Assembly 165583 na seaweed_contig_10 unplaced-scaffold na na JCARSY010000010.1 = NZ_JCARSY010000010.1 Primary Assembly 148259 na seaweed_contig_11 unplaced-scaffold na na JCARSY010000011.1 = NZ_JCARSY010000011.1 Primary Assembly 147900 na seaweed_contig_12 unplaced-scaffold na na JCARSY010000012.1 = NZ_JCARSY010000012.1 Primary Assembly 131239 na seaweed_contig_13 unplaced-scaffold na na JCARSY010000013.1 = NZ_JCARSY010000013.1 Primary Assembly 110252 na seaweed_contig_14 unplaced-scaffold na na JCARSY010000014.1 = NZ_JCARSY010000014.1 Primary Assembly 104263 na seaweed_contig_15 unplaced-scaffold na na JCARSY010000015.1 = NZ_JCARSY010000015.1 Primary Assembly 102734 na seaweed_contig_16 unplaced-scaffold na na JCARSY010000016.1 = NZ_JCARSY010000016.1 Primary Assembly 95467 na seaweed_contig_17 unplaced-scaffold na na JCARSY010000017.1 = NZ_JCARSY010000017.1 Primary Assembly 91600 na seaweed_contig_18 unplaced-scaffold na na JCARSY010000018.1 = NZ_JCARSY010000018.1 Primary Assembly 74215 na seaweed_contig_19 unplaced-scaffold na na JCARSY010000019.1 = NZ_JCARSY010000019.1 Primary Assembly 73691 na seaweed_contig_20 unplaced-scaffold na na JCARSY010000020.1 = NZ_JCARSY010000020.1 Primary Assembly 72707 na seaweed_contig_21 unplaced-scaffold na na JCARSY010000021.1 = NZ_JCARSY010000021.1 Primary Assembly 71906 na seaweed_contig_22 unplaced-scaffold na na JCARSY010000022.1 = NZ_JCARSY010000022.1 Primary Assembly 67403 na seaweed_contig_23 unplaced-scaffold na na JCARSY010000023.1 = NZ_JCARSY010000023.1 Primary Assembly 65924 na seaweed_contig_24 unplaced-scaffold na na JCARSY010000024.1 = NZ_JCARSY010000024.1 Primary Assembly 60700 na seaweed_contig_25 unplaced-scaffold na na JCARSY010000025.1 = NZ_JCARSY010000025.1 Primary Assembly 54982 na seaweed_contig_26 unplaced-scaffold na na JCARSY010000026.1 = NZ_JCARSY010000026.1 Primary Assembly 53320 na seaweed_contig_27 unplaced-scaffold na na JCARSY010000027.1 = NZ_JCARSY010000027.1 Primary Assembly 51056 na seaweed_contig_28 unplaced-scaffold na na JCARSY010000028.1 = NZ_JCARSY010000028.1 Primary Assembly 49424 na seaweed_contig_29 unplaced-scaffold na na JCARSY010000029.1 = NZ_JCARSY010000029.1 Primary Assembly 47829 na seaweed_contig_30 unplaced-scaffold na na JCARSY010000030.1 = NZ_JCARSY010000030.1 Primary Assembly 46652 na seaweed_contig_31 unplaced-scaffold na na JCARSY010000031.1 = NZ_JCARSY010000031.1 Primary Assembly 43769 na seaweed_contig_32 unplaced-scaffold na na JCARSY010000032.1 = NZ_JCARSY010000032.1 Primary Assembly 43560 na seaweed_contig_33 unplaced-scaffold na na JCARSY010000033.1 = NZ_JCARSY010000033.1 Primary Assembly 40577 na seaweed_contig_34 unplaced-scaffold na na JCARSY010000034.1 = NZ_JCARSY010000034.1 Primary Assembly 38366 na seaweed_contig_35 unplaced-scaffold na na JCARSY010000035.1 = NZ_JCARSY010000035.1 Primary Assembly 38040 na seaweed_contig_36 unplaced-scaffold na na JCARSY010000036.1 = NZ_JCARSY010000036.1 Primary Assembly 35935 na seaweed_contig_37 unplaced-scaffold na na JCARSY010000037.1 = NZ_JCARSY010000037.1 Primary Assembly 35880 na seaweed_contig_38 unplaced-scaffold na na JCARSY010000038.1 = NZ_JCARSY010000038.1 Primary Assembly 31457 na seaweed_contig_39 unplaced-scaffold na na JCARSY010000039.1 = NZ_JCARSY010000039.1 Primary Assembly 31268 na seaweed_contig_40 unplaced-scaffold na na JCARSY010000040.1 = NZ_JCARSY010000040.1 Primary Assembly 29926 na seaweed_contig_41 unplaced-scaffold na na JCARSY010000041.1 = NZ_JCARSY010000041.1 Primary Assembly 29437 na seaweed_contig_42 unplaced-scaffold na na JCARSY010000042.1 = NZ_JCARSY010000042.1 Primary Assembly 29011 na seaweed_contig_43 unplaced-scaffold na na JCARSY010000043.1 = NZ_JCARSY010000043.1 Primary Assembly 27892 na seaweed_contig_44 unplaced-scaffold na na JCARSY010000044.1 = NZ_JCARSY010000044.1 Primary Assembly 24431 na seaweed_contig_45 unplaced-scaffold na na JCARSY010000045.1 = NZ_JCARSY010000045.1 Primary Assembly 23569 na seaweed_contig_46 unplaced-scaffold na na JCARSY010000046.1 = NZ_JCARSY010000046.1 Primary Assembly 23423 na seaweed_contig_47 unplaced-scaffold na na JCARSY010000047.1 = NZ_JCARSY010000047.1 Primary Assembly 22178 na seaweed_contig_48 unplaced-scaffold na na JCARSY010000048.1 = NZ_JCARSY010000048.1 Primary Assembly 16407 na seaweed_contig_49 unplaced-scaffold na na JCARSY010000049.1 = NZ_JCARSY010000049.1 Primary Assembly 16225 na seaweed_contig_50 unplaced-scaffold na na JCARSY010000050.1 = NZ_JCARSY010000050.1 Primary Assembly 16155 na seaweed_contig_51 unplaced-scaffold na na JCARSY010000051.1 = NZ_JCARSY010000051.1 Primary Assembly 14493 na seaweed_contig_52 unplaced-scaffold na na JCARSY010000052.1 = NZ_JCARSY010000052.1 Primary Assembly 14434 na seaweed_contig_53 unplaced-scaffold na na JCARSY010000053.1 = NZ_JCARSY010000053.1 Primary Assembly 13628 na seaweed_contig_54 unplaced-scaffold na na JCARSY010000054.1 = NZ_JCARSY010000054.1 Primary Assembly 12868 na seaweed_contig_55 unplaced-scaffold na na JCARSY010000055.1 = NZ_JCARSY010000055.1 Primary Assembly 12782 na seaweed_contig_56 unplaced-scaffold na na JCARSY010000056.1 = NZ_JCARSY010000056.1 Primary Assembly 12757 na seaweed_contig_57 unplaced-scaffold na na JCARSY010000057.1 = NZ_JCARSY010000057.1 Primary Assembly 12509 na seaweed_contig_58 unplaced-scaffold na na JCARSY010000058.1 = NZ_JCARSY010000058.1 Primary Assembly 11557 na seaweed_contig_59 unplaced-scaffold na na JCARSY010000059.1 = NZ_JCARSY010000059.1 Primary Assembly 10973 na seaweed_contig_60 unplaced-scaffold na na JCARSY010000060.1 = NZ_JCARSY010000060.1 Primary Assembly 10807 na seaweed_contig_61 unplaced-scaffold na na JCARSY010000061.1 = NZ_JCARSY010000061.1 Primary Assembly 9267 na seaweed_contig_62 unplaced-scaffold na na JCARSY010000062.1 = NZ_JCARSY010000062.1 Primary Assembly 9065 na seaweed_contig_63 unplaced-scaffold na na JCARSY010000063.1 = NZ_JCARSY010000063.1 Primary Assembly 8251 na seaweed_contig_64 unplaced-scaffold na na JCARSY010000064.1 = NZ_JCARSY010000064.1 Primary Assembly 7930 na seaweed_contig_65 unplaced-scaffold na na JCARSY010000065.1 = NZ_JCARSY010000065.1 Primary Assembly 7768 na seaweed_contig_66 unplaced-scaffold na na JCARSY010000066.1 = NZ_JCARSY010000066.1 Primary Assembly 7754 na seaweed_contig_67 unplaced-scaffold na na JCARSY010000067.1 = NZ_JCARSY010000067.1 Primary Assembly 7600 na seaweed_contig_68 unplaced-scaffold na na JCARSY010000068.1 = NZ_JCARSY010000068.1 Primary Assembly 7486 na seaweed_contig_69 unplaced-scaffold na na JCARSY010000069.1 = NZ_JCARSY010000069.1 Primary Assembly 7359 na seaweed_contig_70 unplaced-scaffold na na JCARSY010000070.1 = NZ_JCARSY010000070.1 Primary Assembly 5963 na seaweed_contig_71 unplaced-scaffold na na JCARSY010000071.1 = NZ_JCARSY010000071.1 Primary Assembly 5260 na seaweed_contig_72 unplaced-scaffold na na JCARSY010000072.1 = NZ_JCARSY010000072.1 Primary Assembly 4571 na seaweed_contig_73 unplaced-scaffold na na JCARSY010000073.1 = NZ_JCARSY010000073.1 Primary Assembly 4213 na seaweed_contig_74 unplaced-scaffold na na JCARSY010000074.1 = NZ_JCARSY010000074.1 Primary Assembly 4088 na seaweed_contig_75 unplaced-scaffold na na JCARSY010000075.1 = NZ_JCARSY010000075.1 Primary Assembly 3953 na seaweed_contig_76 unplaced-scaffold na na JCARSY010000076.1 = NZ_JCARSY010000076.1 Primary Assembly 3918 na seaweed_contig_77 unplaced-scaffold na na JCARSY010000077.1 = NZ_JCARSY010000077.1 Primary Assembly 3784 na seaweed_contig_78 unplaced-scaffold na na JCARSY010000078.1 = NZ_JCARSY010000078.1 Primary Assembly 3446 na seaweed_contig_79 unplaced-scaffold na na JCARSY010000079.1 = NZ_JCARSY010000079.1 Primary Assembly 3005 na seaweed_contig_80 unplaced-scaffold na na JCARSY010000080.1 = NZ_JCARSY010000080.1 Primary Assembly 2608 na seaweed_contig_81 unplaced-scaffold na na JCARSY010000081.1 = NZ_JCARSY010000081.1 Primary Assembly 2301 na seaweed_contig_82 unplaced-scaffold na na JCARSY010000082.1 = NZ_JCARSY010000082.1 Primary Assembly 2198 na seaweed_contig_83 unplaced-scaffold na na JCARSY010000083.1 = NZ_JCARSY010000083.1 Primary Assembly 1979 na seaweed_contig_84 unplaced-scaffold na na JCARSY010000084.1 = NZ_JCARSY010000084.1 Primary Assembly 1945 na seaweed_contig_85 unplaced-scaffold na na JCARSY010000085.1 = NZ_JCARSY010000085.1 Primary Assembly 1842 na seaweed_contig_86 unplaced-scaffold na na JCARSY010000086.1 = NZ_JCARSY010000086.1 Primary Assembly 1786 na seaweed_contig_87 unplaced-scaffold na na JCARSY010000087.1 = NZ_JCARSY010000087.1 Primary Assembly 1731 na seaweed_contig_88 unplaced-scaffold na na JCARSY010000088.1 = NZ_JCARSY010000088.1 Primary Assembly 1705 na seaweed_contig_89 unplaced-scaffold na na JCARSY010000089.1 = NZ_JCARSY010000089.1 Primary Assembly 1689 na seaweed_contig_90 unplaced-scaffold na na JCARSY010000090.1 = NZ_JCARSY010000090.1 Primary Assembly 1617 na seaweed_contig_91 unplaced-scaffold na na JCARSY010000091.1 = NZ_JCARSY010000091.1 Primary Assembly 1503 na seaweed_contig_92 unplaced-scaffold na na JCARSY010000092.1 = NZ_JCARSY010000092.1 Primary Assembly 1485 na seaweed_contig_93 unplaced-scaffold na na JCARSY010000093.1 = NZ_JCARSY010000093.1 Primary Assembly 1398 na seaweed_contig_94 unplaced-scaffold na na JCARSY010000094.1 = NZ_JCARSY010000094.1 Primary Assembly 1278 na seaweed_contig_95 unplaced-scaffold na na JCARSY010000095.1 = NZ_JCARSY010000095.1 Primary Assembly 1255 na seaweed_contig_96 unplaced-scaffold na na JCARSY010000096.1 = NZ_JCARSY010000096.1 Primary Assembly 1233 na seaweed_contig_97 unplaced-scaffold na na JCARSY010000097.1 = NZ_JCARSY010000097.1 Primary Assembly 1223 na seaweed_contig_98 unplaced-scaffold na na JCARSY010000098.1 = NZ_JCARSY010000098.1 Primary Assembly 1211 na seaweed_contig_99 unplaced-scaffold na na JCARSY010000099.1 = NZ_JCARSY010000099.1 Primary Assembly 1206 na seaweed_contig_100 unplaced-scaffold na na JCARSY010000100.1 = NZ_JCARSY010000100.1 Primary Assembly 1184 na seaweed_contig_101 unplaced-scaffold na na JCARSY010000101.1 = NZ_JCARSY010000101.1 Primary Assembly 1173 na seaweed_contig_102 unplaced-scaffold na na JCARSY010000102.1 = NZ_JCARSY010000102.1 Primary Assembly 1071 na seaweed_contig_103 unplaced-scaffold na na JCARSY010000103.1 = NZ_JCARSY010000103.1 Primary Assembly 1056 na seaweed_contig_104 unplaced-scaffold na na JCARSY010000104.1 = NZ_JCARSY010000104.1 Primary Assembly 1046 na seaweed_contig_105 unplaced-scaffold na na JCARSY010000105.1 = NZ_JCARSY010000105.1 Primary Assembly 971 na seaweed_contig_106 unplaced-scaffold na na JCARSY010000106.1 = NZ_JCARSY010000106.1 Primary Assembly 844 na seaweed_contig_107 unplaced-scaffold na na JCARSY010000107.1 = NZ_JCARSY010000107.1 Primary Assembly 832 na seaweed_contig_108 unplaced-scaffold na na JCARSY010000108.1 = NZ_JCARSY010000108.1 Primary Assembly 807 na seaweed_contig_109 unplaced-scaffold na na JCARSY010000109.1 = NZ_JCARSY010000109.1 Primary Assembly 761 na seaweed_contig_110 unplaced-scaffold na na JCARSY010000110.1 = NZ_JCARSY010000110.1 Primary Assembly 723 na seaweed_contig_111 unplaced-scaffold na na JCARSY010000111.1 = NZ_JCARSY010000111.1 Primary Assembly 740 na seaweed_contig_112 unplaced-scaffold na na JCARSY010000112.1 = NZ_JCARSY010000112.1 Primary Assembly 700 na seaweed_contig_113 unplaced-scaffold na na JCARSY010000113.1 = NZ_JCARSY010000113.1 Primary Assembly 682 na seaweed_contig_114 unplaced-scaffold na na JCARSY010000114.1 = NZ_JCARSY010000114.1 Primary Assembly 592 na seaweed_contig_115 unplaced-scaffold na na JCARSY010000115.1 = NZ_JCARSY010000115.1 Primary Assembly 592 na seaweed_contig_116 unplaced-scaffold na na JCARSY010000116.1 = NZ_JCARSY010000116.1 Primary Assembly 591 na seaweed_contig_117 unplaced-scaffold na na JCARSY010000117.1 = NZ_JCARSY010000117.1 Primary Assembly 590 na seaweed_contig_118 unplaced-scaffold na na JCARSY010000118.1 = NZ_JCARSY010000118.1 Primary Assembly 555 na seaweed_contig_119 unplaced-scaffold na na JCARSY010000119.1 = NZ_JCARSY010000119.1 Primary Assembly 543 na seaweed_contig_120 unplaced-scaffold na na JCARSY010000120.1 = NZ_JCARSY010000120.1 Primary Assembly 540 na seaweed_contig_121 unplaced-scaffold na na JCARSY010000121.1 = NZ_JCARSY010000121.1 Primary Assembly 485 na seaweed_contig_122 unplaced-scaffold na na JCARSY010000122.1 = NZ_JCARSY010000122.1 Primary Assembly 467 na seaweed_contig_123 unplaced-scaffold na na JCARSY010000123.1 = NZ_JCARSY010000123.1 Primary Assembly 440 na seaweed_contig_124 unplaced-scaffold na na JCARSY010000124.1 = NZ_JCARSY010000124.1 Primary Assembly 398 na seaweed_contig_125 unplaced-scaffold na na JCARSY010000125.1 = NZ_JCARSY010000125.1 Primary Assembly 390 na seaweed_contig_126 unplaced-scaffold na na JCARSY010000126.1 = NZ_JCARSY010000126.1 Primary Assembly 390 na seaweed_contig_127 unplaced-scaffold na na JCARSY010000127.1 = NZ_JCARSY010000127.1 Primary Assembly 389 na seaweed_contig_128 unplaced-scaffold na na JCARSY010000128.1 = NZ_JCARSY010000128.1 Primary Assembly 389 na seaweed_contig_129 unplaced-scaffold na na JCARSY010000129.1 = NZ_JCARSY010000129.1 Primary Assembly 389 na seaweed_contig_130 unplaced-scaffold na na JCARSY010000130.1 = NZ_JCARSY010000130.1 Primary Assembly 384 na seaweed_contig_131 unplaced-scaffold na na JCARSY010000131.1 = NZ_JCARSY010000131.1 Primary Assembly 372 na seaweed_contig_132 unplaced-scaffold na na JCARSY010000132.1 = NZ_JCARSY010000132.1 Primary Assembly 370 na seaweed_contig_133 unplaced-scaffold na na JCARSY010000133.1 = NZ_JCARSY010000133.1 Primary Assembly 370 na seaweed_contig_134 unplaced-scaffold na na JCARSY010000134.1 = NZ_JCARSY010000134.1 Primary Assembly 370 na seaweed_contig_135 unplaced-scaffold na na JCARSY010000135.1 = NZ_JCARSY010000135.1 Primary Assembly 370 na seaweed_contig_136 unplaced-scaffold na na JCARSY010000136.1 = NZ_JCARSY010000136.1 Primary Assembly 355 na seaweed_contig_137 unplaced-scaffold na na JCARSY010000137.1 = NZ_JCARSY010000137.1 Primary Assembly 352 na seaweed_contig_138 unplaced-scaffold na na JCARSY010000138.1 = NZ_JCARSY010000138.1 Primary Assembly 352 na seaweed_contig_139 unplaced-scaffold na na JCARSY010000139.1 = NZ_JCARSY010000139.1 Primary Assembly 340 na seaweed_contig_140 unplaced-scaffold na na JCARSY010000140.1 = NZ_JCARSY010000140.1 Primary Assembly 339 na seaweed_contig_141 unplaced-scaffold na na JCARSY010000141.1 = NZ_JCARSY010000141.1 Primary Assembly 337 na seaweed_contig_142 unplaced-scaffold na na JCARSY010000142.1 = NZ_JCARSY010000142.1 Primary Assembly 337 na seaweed_contig_143 unplaced-scaffold na na JCARSY010000143.1 = NZ_JCARSY010000143.1 Primary Assembly 322 na seaweed_contig_144 unplaced-scaffold na na JCARSY010000144.1 = NZ_JCARSY010000144.1 Primary Assembly 343 na