# Assembly name:  C_Virginalis_male_GT1.1
# Organism name:  Copadichromis virginalis (ray-finned fishes)
# Infraspecific name:  ecotype=Utaka
# Isolate:  Kocher_CV1m
# Sex:  male
# Taxid:          163618
# BioSample:      SAMN44636482
# BioProject:     PRJNA1112855
# Submitter:      Georgia Institute of Technology
# Date:           2026-05-11
# Assembly type:  haploid
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBXWVC01
# Assembly method: Mabs-hifiasm v. 2.28
# Expected final version: Yes
# Genome coverage: 103x
# Sequencing technology: PacBio Revio
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_057382275.1
# RefSeq assembly accession: GCF_057382275.1
# RefSeq assembly and GenBank assemblies identical: no
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
LG1	assembled-molecule	LG1	Linkage Group	CM171507.1	=	NC_140618.1	Primary Assembly	43215573	na
LG2	assembled-molecule	LG2	Linkage Group	CM171508.1	=	NC_140619.1	Primary Assembly	39209849	na
LG3	assembled-molecule	LG3	Linkage Group	CM171509.1	=	NC_140620.1	Primary Assembly	65263153	na
LG4	assembled-molecule	LG4	Linkage Group	CM171510.1	=	NC_140621.1	Primary Assembly	37140313	na
LG5	assembled-molecule	LG5	Linkage Group	CM171511.1	=	NC_140622.1	Primary Assembly	42448743	na
LG6	assembled-molecule	LG6	Linkage Group	CM171512.1	=	NC_140623.1	Primary Assembly	44553077	na
LG7	assembled-molecule	LG7	Linkage Group	CM171513.1	=	NC_140624.1	Primary Assembly	71141096	na
LG8	assembled-molecule	LG8	Linkage Group	CM171514.1	=	NC_140625.1	Primary Assembly	32296210	na
LG9	assembled-molecule	LG9	Linkage Group	CM171515.1	=	NC_140626.1	Primary Assembly	36174902	na
LG10	assembled-molecule	LG10	Linkage Group	CM171516.1	=	NC_140627.1	Primary Assembly	35645786	na
LG11	assembled-molecule	LG11	Linkage Group	CM171517.1	=	NC_140628.1	Primary Assembly	40903209	na
LG12	assembled-molecule	LG12	Linkage Group	CM171518.1	=	NC_140629.1	Primary Assembly	41469095	na
LG13	assembled-molecule	LG13	Linkage Group	CM171519.1	=	NC_140630.1	Primary Assembly	33464272	na
LG14	assembled-molecule	LG14	Linkage Group	CM171520.1	=	NC_140631.1	Primary Assembly	43566999	na
LG15	assembled-molecule	LG15	Linkage Group	CM171521.1	=	NC_140632.1	Primary Assembly	43071007	na
LG16	assembled-molecule	LG16	Linkage Group	CM171522.1	=	NC_140633.1	Primary Assembly	41554498	na
LG17	assembled-molecule	LG17	Linkage Group	CM171523.1	=	NC_140634.1	Primary Assembly	41223988	na
LG18	assembled-molecule	LG18	Linkage Group	CM171524.1	=	NC_140635.1	Primary Assembly	38551879	na
LG19	assembled-molecule	LG19	Linkage Group	CM171525.1	=	NC_140636.1	Primary Assembly	36747503	na
LG20	assembled-molecule	LG20	Linkage Group	CM171526.1	=	NC_140637.1	Primary Assembly	35230766	na
LG22	assembled-molecule	LG22	Linkage Group	CM171527.1	=	NC_140638.1	Primary Assembly	37508216	na
LG23	assembled-molecule	LG23	Linkage Group	CM171528.1	=	NC_140639.1	Primary Assembly	54035070	na
unmapped_scaffold_1	unplaced-scaffold	na	na	JBXWVC010000023.1	=	NW_028188589.1	Primary Assembly	10950799	na
unmapped_scaffold_2	unplaced-scaffold	na	na	JBXWVC010000024.1	=	NW_028188590.1	Primary Assembly	330157	na
unmapped_scaffold_3	unplaced-scaffold	na	na	JBXWVC010000025.1	=	NW_028188591.1	Primary Assembly	364164	na
unmapped_scaffold_4	unplaced-scaffold	na	na	JBXWVC010000026.1	=	NW_028188592.1	Primary Assembly	333965	na
unmapped_scaffold_5	unplaced-scaffold	na	na	JBXWVC010000027.1	=	NW_028188593.1	Primary Assembly	68614	na
Mitochondrial_Sequence	assembled-molecule	MT	Mitochondrion	CM171529.1	<>	na	non-nuclear	16582	na