# Assembly name:  Sscrofa_HxYL_maternal_Yorkshire_Landrace_v2.0
# Organism name:  Sus scrofa (pig)
# Isolate:  SSC_HxYL_T2T_F1_AM1
# Sex:  male
# Taxid:          9823
# BioSample:      SAMN51643035
# BioProject:     PRJNA1331744
# Submitter:      Michigan State University
# Date:           2026-01-28
# Assembly type:  haploid (maternal haplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBREVY02
# Assembly method: Verkko v. 2.2
# Expected final version: Yes
# Genome coverage: 50x
# Sequencing technology: Oxford Nanopore; PacBio Sequel
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_054392235.2
# RefSeq assembly accession: GCF_054392235.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_054392225.1 (paternal haplotype of diploid)
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
chr1_YL	assembled-molecule	1	Chromosome	CM136200.1	=	NC_139383.1	Primary Assembly	289879209	na
chr2_YL	assembled-molecule	2	Chromosome	CM136201.1	=	NC_139384.1	Primary Assembly	162355525	na
chr3_YL	assembled-molecule	3	Chromosome	CM136202.1	=	NC_139385.1	Primary Assembly	145095113	na
chr4_YL	assembled-molecule	4	Chromosome	CM136203.1	=	NC_139386.1	Primary Assembly	136489335	na
chr5_YL	assembled-molecule	5	Chromosome	CM136204.1	=	NC_139387.1	Primary Assembly	111826633	na
chr6_YL	assembled-molecule	6	Chromosome	CM136205.1	=	NC_139388.1	Primary Assembly	175215143	na
chr7_YL	assembled-molecule	7	Chromosome	CM136206.1	=	NC_139389.1	Primary Assembly	137247806	na
chr8_YL	assembled-molecule	8	Chromosome	CM136207.1	=	NC_139390.1	Primary Assembly	145416974	na
chr9_YL	assembled-molecule	9	Chromosome	CM136208.1	=	NC_139391.1	Primary Assembly	144319977	na
chr10_YL	assembled-molecule	10	Chromosome	CM136209.1	=	NC_139392.1	Primary Assembly	96129373	na
chr11_YL	assembled-molecule	11	Chromosome	CM136210.1	=	NC_139393.1	Primary Assembly	86420215	na
chr12_YL	assembled-molecule	12	Chromosome	CM136211.1	=	NC_139394.1	Primary Assembly	67319144	na
chr13_YL	assembled-molecule	13	Chromosome	CM136212.1	=	NC_139395.1	Primary Assembly	224422908	na
chr14_YL	assembled-molecule	14	Chromosome	CM136213.1	=	NC_139396.1	Primary Assembly	164639055	na
chr15_YL	assembled-molecule	15	Chromosome	CM136214.1	=	NC_139397.1	Primary Assembly	154751373	na
chr16_YL	assembled-molecule	16	Chromosome	CM136215.1	=	NC_139398.1	Primary Assembly	92108326	na
chr17_YL	assembled-molecule	17	Chromosome	CM136216.1	=	NC_139399.1	Primary Assembly	70904781	na
chr18_YL	assembled-molecule	18	Chromosome	CM136217.1	=	NC_139400.1	Primary Assembly	64967720	na
chrX_YL	assembled-molecule	X	Chromosome	CM136218.1	=	NC_139401.1	Primary Assembly	136181886	na
chrY_H	assembled-molecule	Y	Chromosome	CM139238.1	=	NC_139402.1	Primary Assembly	48696281	na
dam_21	unplaced-scaffold	na	na	JBREVY020000022.1	=	NW_028146962.1	Primary Assembly	116475	na
dam_38	unplaced-scaffold	na	na	JBREVY020000023.1	=	NW_028146963.1	Primary Assembly	172550	na
dam_40	unplaced-scaffold	na	na	JBREVY020000024.1	=	NW_028146964.1	Primary Assembly	158290	na
dam_41	unplaced-scaffold	na	na	JBREVY020000025.1	=	NW_028146965.1	Primary Assembly	181984	na
dam_43	unplaced-scaffold	na	na	JBREVY020000026.1	=	NW_028146966.1	Primary Assembly	113555	na
dam_71	unplaced-scaffold	na	na	JBREVY020000027.1	=	NW_028146967.1	Primary Assembly	72746	na
dam_72	unplaced-scaffold	na	na	JBREVY020000028.1	=	NW_028146968.1	Primary Assembly	96095	na
dam_73	unplaced-scaffold	na	na	JBREVY020000029.1	=	NW_028146969.1	Primary Assembly	134217	na
dam_74	unplaced-scaffold	na	na	JBREVY020000030.1	=	NW_028146970.1	Primary Assembly	167433	na
dam_75	unplaced-scaffold	na	na	JBREVY020000031.1	=	NW_028146971.1	Primary Assembly	114971	na
dam_167	unplaced-scaffold	na	na	JBREVY020000032.1	=	NW_028146972.1	Primary Assembly	166231	na
dam_190	unplaced-scaffold	na	na	JBREVY020000033.1	=	NW_028146973.1	Primary Assembly	107138	na
dam_191	unplaced-scaffold	na	na	JBREVY020000034.1	=	NW_028146974.1	Primary Assembly	103089	na
dam_192	unplaced-scaffold	na	na	JBREVY020000035.1	=	NW_028146975.1	Primary Assembly	82241	na
dam_193	unplaced-scaffold	na	na	JBREVY020000036.1	=	NW_028146976.1	Primary Assembly	167820	na
dam_194	unplaced-scaffold	na	na	JBREVY020000037.1	=	NW_028146977.1	Primary Assembly	68510	na
dam_195	unplaced-scaffold	na	na	JBREVY020000038.1	=	NW_028146978.1	Primary Assembly	19577	na
mtDNA_YL	assembled-molecule	MT	Mitochondrion	CM136219.1	<>	na	non-nuclear	16739	na