# Assembly name: ASM5402793v1 # Organism name: Methanocaldococcus sp. (euryarchaeotes) # Isolate: 352-5-R1-1-3_bin.41 # Taxid: 2152917 # BioSample: SAMN49582900 # BioProject: PRJNA1244896 # Submitter: Portland State University # Date: 2025-12-16 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JBPMJH01 # Assembly method: MEGAHIT v. v1.2.9 # Expected final version: Yes # Genome coverage: 1480.68x # Sequencing technology: Illumina NextSeq # Excluded from RefSeq: derived from metagenome # GenBank assembly accession: GCA_054027935.1 # RefSeq assembly accession: GCF_054027935.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_054027945.1 GCF_054027945.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name lcl_k127_129158 unplaced-scaffold na na JBPMJH010000001.1 = NZ_JBPMJH010000001.1 Primary Assembly 14570 na lcl_k127_129174 unplaced-scaffold na na JBPMJH010000002.1 = NZ_JBPMJH010000002.1 Primary Assembly 3752 na lcl_k127_103414 unplaced-scaffold na na JBPMJH010000003.1 = NZ_JBPMJH010000003.1 Primary Assembly 3536 na lcl_k127_130 unplaced-scaffold na na JBPMJH010000004.1 = NZ_JBPMJH010000004.1 Primary Assembly 6979 na lcl_k127_284498 unplaced-scaffold na na JBPMJH010000005.1 = NZ_JBPMJH010000005.1 Primary Assembly 6269 na lcl_k127_26117 unplaced-scaffold na na JBPMJH010000006.1 = NZ_JBPMJH010000006.1 Primary Assembly 18638 na lcl_k127_232723 unplaced-scaffold na na JBPMJH010000007.1 = NZ_JBPMJH010000007.1 Primary Assembly 6514 na lcl_k127_26227 unplaced-scaffold na na JBPMJH010000008.1 = NZ_JBPMJH010000008.1 Primary Assembly 6318 na lcl_k127_284728 unplaced-scaffold na na JBPMJH010000009.1 = NZ_JBPMJH010000009.1 Primary Assembly 5936 na lcl_k127_336272 unplaced-scaffold na na JBPMJH010000010.1 = NZ_JBPMJH010000010.1 Primary Assembly 23331 na lcl_k127_129762 unplaced-scaffold na na JBPMJH010000011.1 = NZ_JBPMJH010000011.1 Primary Assembly 15618 na lcl_k127_207059 unplaced-scaffold na na JBPMJH010000012.1 = NZ_JBPMJH010000012.1 Primary Assembly 2106 na lcl_k127_104250 unplaced-scaffold na na JBPMJH010000013.1 = NZ_JBPMJH010000013.1 Primary Assembly 6516 na lcl_k127_362407 unplaced-scaffold na na JBPMJH010000014.1 = NZ_JBPMJH010000014.1 Primary Assembly 14309 na lcl_k127_233293 unplaced-scaffold na na JBPMJH010000015.1 = NZ_JBPMJH010000015.1 Primary Assembly 9309 na lcl_k127_207297 unplaced-scaffold na na JBPMJH010000016.1 = NZ_JBPMJH010000016.1 Primary Assembly 6046 na lcl_k127_259064 unplaced-scaffold na na JBPMJH010000017.1 = NZ_JBPMJH010000017.1 Primary Assembly 9747 na lcl_k127_1093 unplaced-scaffold na na JBPMJH010000018.1 = NZ_JBPMJH010000018.1 Primary Assembly 17007 na lcl_k127_285405 unplaced-scaffold na na JBPMJH010000019.1 = NZ_JBPMJH010000019.1 Primary Assembly 4922 na lcl_k127_362603 unplaced-scaffold na na JBPMJH010000020.1 = NZ_JBPMJH010000020.1 Primary Assembly 4435 na lcl_k127_259258 unplaced-scaffold na na JBPMJH010000021.1 = NZ_JBPMJH010000021.1 Primary Assembly 13933 na lcl_k127_53214 unplaced-scaffold na na JBPMJH010000022.1 = NZ_JBPMJH010000022.1 Primary Assembly 2906 na lcl_k127_27184 unplaced-scaffold na na JBPMJH010000023.1 = NZ_JBPMJH010000023.1 Primary Assembly 3022 na lcl_k127_53319 unplaced-scaffold na na JBPMJH010000024.1 = NZ_JBPMJH010000024.1 Primary Assembly 3022 na lcl_k127_207917 unplaced-scaffold na na JBPMJH010000025.1 = NZ_JBPMJH010000025.1 Primary Assembly 38870 na lcl_k127_78972 unplaced-scaffold na na JBPMJH010000026.1 = NZ_JBPMJH010000026.1 Primary Assembly 11511 na lcl_k127_259541 unplaced-scaffold na na JBPMJH010000027.1 = NZ_JBPMJH010000027.1 Primary Assembly 6445 na lcl_k127_208028 unplaced-scaffold na na JBPMJH010000028.1 = NZ_JBPMJH010000028.1 Primary Assembly 17626 na lcl_k127_286112 unplaced-scaffold na na JBPMJH010000029.1 = NZ_JBPMJH010000029.1 Primary Assembly 9292 na lcl_k127_286116 unplaced-scaffold na na JBPMJH010000030.1 = NZ_JBPMJH010000030.1 Primary Assembly 18375 na lcl_k127_182276 unplaced-scaffold na na JBPMJH010000031.1 = NZ_JBPMJH010000031.1 Primary Assembly 4550 na lcl_k127_208354 unplaced-scaffold na na JBPMJH010000032.1 = NZ_JBPMJH010000032.1 Primary Assembly 31403 na lcl_k127_363477 unplaced-scaffold na na JBPMJH010000033.1 = NZ_JBPMJH010000033.1 Primary Assembly 9419 na lcl_k127_208474 unplaced-scaffold na na JBPMJH010000034.1 = NZ_JBPMJH010000034.1 Primary Assembly 15673 na lcl_k127_208770 unplaced-scaffold na na JBPMJH010000035.1 = NZ_JBPMJH010000035.1 Primary Assembly 10987 na lcl_k127_79790 unplaced-scaffold na na JBPMJH010000036.1 = NZ_JBPMJH010000036.1 Primary Assembly 3106 na lcl_k127_312715 unplaced-scaffold na na JBPMJH010000037.1 = NZ_JBPMJH010000037.1 Primary Assembly 6394 na lcl_k127_54466 unplaced-scaffold na na JBPMJH010000038.1 = NZ_JBPMJH010000038.1 Primary Assembly 19805 na lcl_k127_364145 unplaced-scaffold na na JBPMJH010000039.1 = NZ_JBPMJH010000039.1 Primary Assembly 13827 na lcl_k127_132094 unplaced-scaffold na na JBPMJH010000040.1 = NZ_JBPMJH010000040.1 Primary Assembly 5219 na lcl_k127_364182 unplaced-scaffold na na JBPMJH010000041.1 = NZ_JBPMJH010000041.1 Primary Assembly 8391 na lcl_k127_338130 unplaced-scaffold na na JBPMJH010000042.1 = NZ_JBPMJH010000042.1 Primary Assembly 8180 na lcl_k127_364334 unplaced-scaffold na na JBPMJH010000043.1 = NZ_JBPMJH010000043.1 Primary Assembly 4597 na lcl_k127_54966 unplaced-scaffold na na JBPMJH010000044.1 = NZ_JBPMJH010000044.1 Primary Assembly 2422 na lcl_k127_235609 unplaced-scaffold na na JBPMJH010000045.1 = NZ_JBPMJH010000045.1 Primary Assembly 10656 na lcl_k127_183284 unplaced-scaffold na na JBPMJH010000046.1 = NZ_JBPMJH010000046.1 Primary Assembly 4199 na lcl_k127_209651 unplaced-scaffold na na JBPMJH010000047.1 = NZ_JBPMJH010000047.1 Primary Assembly 7128 na lcl_k127_158774 unplaced-scaffold na na JBPMJH010000048.1 = NZ_JBPMJH010000048.1 Primary Assembly 6324 na lcl_k127_261136 unplaced-scaffold na na JBPMJH010000049.1 = NZ_JBPMJH010000049.1 Primary Assembly 29806 na lcl_k127_364983 unplaced-scaffold na na JBPMJH010000050.1 = NZ_JBPMJH010000050.1 Primary Assembly 4867 na lcl_k127_3574 unplaced-scaffold na na JBPMJH010000051.1 = NZ_JBPMJH010000051.1 Primary Assembly 11832 na lcl_k127_365042 unplaced-scaffold na na JBPMJH010000052.1 = NZ_JBPMJH010000052.1 Primary Assembly 12133 na lcl_k127_55794 unplaced-scaffold na na JBPMJH010000053.1 = NZ_JBPMJH010000053.1 Primary Assembly 5209 na lcl_k127_3621 unplaced-scaffold na na JBPMJH010000054.1 = NZ_JBPMJH010000054.1 Primary Assembly 9581 na lcl_k127_210289 unplaced-scaffold na na JBPMJH010000055.1 = NZ_JBPMJH010000055.1 Primary Assembly 8484 na lcl_k127_133289 unplaced-scaffold na na JBPMJH010000056.1 = NZ_JBPMJH010000056.1 Primary Assembly 9529 na lcl_k127_184485 unplaced-scaffold na na JBPMJH010000057.1 = NZ_JBPMJH010000057.1 Primary Assembly 2873 na lcl_k127_159593 unplaced-scaffold na na JBPMJH010000058.1 = NZ_JBPMJH010000058.1 Primary Assembly 3047 na lcl_k127_365854 unplaced-scaffold na na JBPMJH010000059.1 = NZ_JBPMJH010000059.1 Primary Assembly 2189 na lcl_k127_211389 unplaced-scaffold na na JBPMJH010000060.1 = NZ_JBPMJH010000060.1 Primary Assembly 7303 na lcl_k127_211518 unplaced-scaffold na na JBPMJH010000061.1 = NZ_JBPMJH010000061.1 Primary Assembly 2227 na lcl_k127_82514 unplaced-scaffold na na JBPMJH010000062.1 = NZ_JBPMJH010000062.1 Primary Assembly 9189 na lcl_k127_315545 unplaced-scaffold na na JBPMJH010000063.1 = NZ_JBPMJH010000063.1 Primary Assembly 3078 na lcl_k127_160223 unplaced-scaffold na na JBPMJH010000064.1 = NZ_JBPMJH010000064.1 Primary Assembly 6756 na lcl_k127_57374 unplaced-scaffold na na JBPMJH010000065.1 = NZ_JBPMJH010000065.1 Primary Assembly 3216 na lcl_k127_262545 unplaced-scaffold na na JBPMJH010000066.1 = NZ_JBPMJH010000066.1 Primary Assembly 3436 na lcl_k127_160619 unplaced-scaffold na na JBPMJH010000067.1 = NZ_JBPMJH010000067.1 Primary Assembly 4656 na lcl_k127_5212 unplaced-scaffold na na JBPMJH010000068.1 = NZ_JBPMJH010000068.1 Primary Assembly 22708 na lcl_k127_185608 unplaced-scaffold na na JBPMJH010000069.1 = NZ_JBPMJH010000069.1 Primary Assembly 3467 na lcl_k127_341264 unplaced-scaffold na na JBPMJH010000070.1 = NZ_JBPMJH010000070.1 Primary Assembly 5481 na lcl_k127_185699 unplaced-scaffold na na JBPMJH010000071.1 = NZ_JBPMJH010000071.1 Primary Assembly 12049 na lcl_k127_212346 unplaced-scaffold na na JBPMJH010000072.1 = NZ_JBPMJH010000072.1 Primary Assembly 2576 na lcl_k127_5586 unplaced-scaffold na na JBPMJH010000073.1 = NZ_JBPMJH010000073.1 Primary Assembly 4405 na lcl_k127_31009 unplaced-scaffold na na JBPMJH010000074.1 = NZ_JBPMJH010000074.1 Primary Assembly 2265 na lcl_k127_263383 unplaced-scaffold na na JBPMJH010000075.1 = NZ_JBPMJH010000075.1 Primary Assembly 9575 na lcl_k127_186190 unplaced-scaffold na na JBPMJH010000076.1 = NZ_JBPMJH010000076.1 Primary Assembly 6869 na lcl_k127_239115 unplaced-scaffold na na JBPMJH010000077.1 = NZ_JBPMJH010000077.1 Primary Assembly 16007 na lcl_k127_161508 unplaced-scaffold na na JBPMJH010000078.1 = NZ_JBPMJH010000078.1 Primary Assembly 11317 na lcl_k127_6257 unplaced-scaffold na na JBPMJH010000079.1 = NZ_JBPMJH010000079.1 Primary Assembly 14546 na lcl_k127_110934 unplaced-scaffold na na JBPMJH010000080.1 = NZ_JBPMJH010000080.1 Primary Assembly 2520 na lcl_k127_6357 unplaced-scaffold na na JBPMJH010000081.1 = NZ_JBPMJH010000081.1 Primary Assembly 22018 na lcl_k127_342815 unplaced-scaffold na na JBPMJH010000082.1 = NZ_JBPMJH010000082.1 Primary Assembly 13959 na lcl_k127_31598 unplaced-scaffold na na JBPMJH010000083.1 = NZ_JBPMJH010000083.1 Primary Assembly 5385 na lcl_k127_264107 unplaced-scaffold na na JBPMJH010000084.1 = NZ_JBPMJH010000084.1 Primary Assembly 13286 na lcl_k127_240582 unplaced-scaffold na na JBPMJH010000085.1 = NZ_JBPMJH010000085.1 Primary Assembly 11658 na lcl_k127_136974 unplaced-scaffold na na JBPMJH010000086.1 = NZ_JBPMJH010000086.1 Primary Assembly 13227 na lcl_k127_240648 unplaced-scaffold na na JBPMJH010000087.1 = NZ_JBPMJH010000087.1 Primary Assembly 4334 na lcl_k127_137113 unplaced-scaffold na na JBPMJH010000088.1 = NZ_JBPMJH010000088.1 Primary Assembly 3492 na lcl_k127_368888 unplaced-scaffold na na JBPMJH010000089.1 = NZ_JBPMJH010000089.1 Primary Assembly 16058 na lcl_k127_293136 unplaced-scaffold na na JBPMJH010000090.1 = NZ_JBPMJH010000090.1 Primary Assembly 15345 na lcl_k127_293160 unplaced-scaffold na na JBPMJH010000091.1 = NZ_JBPMJH010000091.1 Primary Assembly 7021 na lcl_k127_188169 unplaced-scaffold na na JBPMJH010000092.1 = NZ_JBPMJH010000092.1 Primary Assembly 13447 na lcl_k127_86967 unplaced-scaffold na na JBPMJH010000093.1 = NZ_JBPMJH010000093.1 Primary Assembly 12535 na lcl_k127_370511 unplaced-scaffold na na JBPMJH010000094.1 = NZ_JBPMJH010000094.1 Primary Assembly 17531 na lcl_k127_320118 unplaced-scaffold na na JBPMJH010000095.1 = NZ_JBPMJH010000095.1 Primary Assembly 2604 na lcl_k127_294867 unplaced-scaffold na na JBPMJH010000096.1 = NZ_JBPMJH010000096.1 Primary Assembly 2761 na lcl_k127_370563 unplaced-scaffold na na JBPMJH010000097.1 = NZ_JBPMJH010000097.1 Primary Assembly 9416 na lcl_k127_164669 unplaced-scaffold na na JBPMJH010000098.1 = NZ_JBPMJH010000098.1 Primary Assembly 3601 na lcl_k127_216977 unplaced-scaffold na na JBPMJH010000099.1 = NZ_JBPMJH010000099.1 Primary Assembly 4065 na lcl_k127_346138 unplaced-scaffold na na JBPMJH010000100.1 = NZ_JBPMJH010000100.1 Primary Assembly 5564 na lcl_k127_346648 unplaced-scaffold na na JBPMJH010000101.1 = NZ_JBPMJH010000101.1 Primary Assembly 4293 na lcl_k127_346768 unplaced-scaffold na na JBPMJH010000102.1 = NZ_JBPMJH010000102.1 Primary Assembly 3409 na lcl_k127_140485 unplaced-scaffold na na JBPMJH010000103.1 = NZ_JBPMJH010000103.1 Primary Assembly 5988 na lcl_k127_166283 unplaced-scaffold na na JBPMJH010000104.1 = NZ_JBPMJH010000104.1 Primary Assembly 8513 na lcl_k127_35264 unplaced-scaffold na na JBPMJH010000105.1 = NZ_JBPMJH010000105.1 Primary Assembly 9648 na lcl_k127_372601 unplaced-scaffold na na JBPMJH010000106.1 = NZ_JBPMJH010000106.1 Primary Assembly 2277 na lcl_k127_140999 unplaced-scaffold na na JBPMJH010000107.1 = NZ_JBPMJH010000107.1 Primary Assembly 2493 na lcl_k127_64277 unplaced-scaffold na na JBPMJH010000108.1 = NZ_JBPMJH010000108.1 Primary Assembly 4456 na lcl_k127_218556 unplaced-scaffold na na JBPMJH010000109.1 = NZ_JBPMJH010000109.1 Primary Assembly 4385 na lcl_k127_245422 unplaced-scaffold na na JBPMJH010000110.1 = NZ_JBPMJH010000110.1 Primary Assembly 12081 na lcl_k127_219568 unplaced-scaffold na na JBPMJH010000111.1 = NZ_JBPMJH010000111.1 Primary Assembly 5800 na lcl_k127_219682 unplaced-scaffold na na JBPMJH010000112.1 = NZ_JBPMJH010000112.1 Primary Assembly 5187 na lcl_k127_65639 unplaced-scaffold na na JBPMJH010000113.1 = NZ_JBPMJH010000113.1 Primary Assembly 2801 na lcl_k127_300347 unplaced-scaffold na na JBPMJH010000114.1 = NZ_JBPMJH010000114.1 Primary Assembly 6602 na lcl_k127_351365 unplaced-scaffold na na JBPMJH010000115.1 = NZ_JBPMJH010000115.1 Primary Assembly 2299 na lcl_k127_67708 unplaced-scaffold na na JBPMJH010000116.1 = NZ_JBPMJH010000116.1 Primary Assembly 8504 na lcl_k127_272529 unplaced-scaffold na na JBPMJH010000117.1 = NZ_JBPMJH010000117.1 Primary Assembly 3009 na lcl_k127_14694 unplaced-scaffold na na JBPMJH010000118.1 = NZ_JBPMJH010000118.1 Primary Assembly 2192 na lcl_k127_352641 unplaced-scaffold na na JBPMJH010000119.1 = NZ_JBPMJH010000119.1 Primary Assembly 10209 na lcl_k127_171818 unplaced-scaffold na na JBPMJH010000120.1 = NZ_JBPMJH010000120.1 Primary Assembly 7489 na lcl_k127_377553 unplaced-scaffold na na JBPMJH010000121.1 = NZ_JBPMJH010000121.1 Primary Assembly 2089 na lcl_k127_15992 unplaced-scaffold na na JBPMJH010000122.1 = NZ_JBPMJH010000122.1 Primary Assembly 10008 na lcl_k127_275095 unplaced-scaffold na na JBPMJH010000123.1 = NZ_JBPMJH010000123.1 Primary Assembly 7705 na lcl_k127_251535 unplaced-scaffold na na JBPMJH010000124.1 = NZ_JBPMJH010000124.1 Primary Assembly 3589 na lcl_k127_354324 unplaced-scaffold na na JBPMJH010000125.1 = NZ_JBPMJH010000125.1 Primary Assembly 6867 na lcl_k127_98241 unplaced-scaffold na na JBPMJH010000126.1 = NZ_JBPMJH010000126.1 Primary Assembly 9855 na lcl_k127_98729 unplaced-scaffold na na JBPMJH010000127.1 = NZ_JBPMJH010000127.1 Primary Assembly 3054 na lcl_k127_18538 unplaced-scaffold na na JBPMJH010000128.1 = NZ_JBPMJH010000128.1 Primary Assembly 10570 na lcl_k127_174456 unplaced-scaffold na na JBPMJH010000129.1 = NZ_JBPMJH010000129.1 Primary Assembly 3555 na lcl_k127_307071 unplaced-scaffold na na JBPMJH010000130.1 = NZ_JBPMJH010000130.1 Primary Assembly 3417 na lcl_k127_276986 unplaced-scaffold na na JBPMJH010000131.1 = NZ_JBPMJH010000131.1 Primary Assembly 2155 na lcl_k127_277175 unplaced-scaffold na na JBPMJH010000132.1 = NZ_JBPMJH010000132.1 Primary Assembly 7282 na lcl_k127_381070 unplaced-scaffold na na JBPMJH010000133.1 = NZ_JBPMJH010000133.1 Primary Assembly 6207 na lcl_k127_382327 unplaced-scaffold na na JBPMJH010000134.1 = NZ_JBPMJH010000134.1 Primary Assembly 5677 na lcl_k127_43570 unplaced-scaffold na na JBPMJH010000135.1 = NZ_JBPMJH010000135.1 Primary Assembly 4479 na lcl_k127_21643 unplaced-scaffold na na JBPMJH010000136.1 = NZ_JBPMJH010000136.1 Primary Assembly 5097 na lcl_k127_282749 unplaced-scaffold na na JBPMJH010000137.1 = NZ_JBPMJH010000137.1 Primary Assembly 16404 na lcl_k127_51540 unplaced-scaffold na na JBPMJH010000138.1 = NZ_JBPMJH010000138.1 Primary Assembly 2732 na