# Assembly name: Olatipes_Hd-rR_3.1 # Organism name: Oryzias latipes (Japanese medaka) # Infraspecific name: strain=Hd-rR # Taxid: 8090 # BioSample: SAMD00876705 # BioProject: PRJDB19938 # Submitter: Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo # Date: 2025-09-27 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # Assembly method: hifiasm v. 0.19.6 # Genome coverage: 68x # Sequencing technology: PacBio Sequel II; Oxford Nanopore P2 solo # RefSeq category: Reference Genome # GenBank assembly accession: GCA_053564925.1 # RefSeq assembly accession: GCF_053564925.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_053564955.1 GCF_053564955.1 Primary Assembly ## GCA_053564985.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 1 assembled-molecule 1 Chromosome AP040370.1 = NC_136237.1 Primary Assembly 44091850 na 2 assembled-molecule 2 Chromosome AP040371.1 = NC_136238.1 Primary Assembly 52009884 na 3 assembled-molecule 3 Chromosome AP040372.1 = NC_136239.1 Primary Assembly 43239212 na 4 assembled-molecule 4 Chromosome AP040373.1 = NC_136240.1 Primary Assembly 37774557 na 5 assembled-molecule 5 Chromosome AP040374.1 = NC_136241.1 Primary Assembly 36781189 na 6 assembled-molecule 6 Chromosome AP040375.1 = NC_136242.1 Primary Assembly 35610385 na 7 assembled-molecule 7 Chromosome AP040376.1 = NC_136243.1 Primary Assembly 37466715 na 8 assembled-molecule 8 Chromosome AP040377.1 = NC_136244.1 Primary Assembly 28765803 na 9 assembled-molecule 9 Chromosome AP040378.1 = NC_136245.1 Primary Assembly 36065826 na 10 assembled-molecule 10 Chromosome AP040379.1 = NC_136246.1 Primary Assembly 35322326 na 11 assembled-molecule 11 Chromosome AP040380.1 = NC_136247.1 Primary Assembly 30753326 na 12 assembled-molecule 12 Chromosome AP040381.1 = NC_136248.1 Primary Assembly 35121269 na 13 assembled-molecule 13 Chromosome AP040382.1 = NC_136249.1 Primary Assembly 37297654 na 14 assembled-molecule 14 Chromosome AP040383.1 = NC_136250.1 Primary Assembly 32223741 na 15 assembled-molecule 15 Chromosome AP040384.1 = NC_136251.1 Primary Assembly 33053314 na 16 assembled-molecule 16 Chromosome AP040385.1 = NC_136252.1 Primary Assembly 36669180 na 17 assembled-molecule 17 Chromosome AP040386.1 = NC_136253.1 Primary Assembly 37137566 na 18 assembled-molecule 18 Chromosome AP040387.1 = NC_136254.1 Primary Assembly 38704731 na 19 assembled-molecule 19 Chromosome AP040388.1 = NC_136255.1 Primary Assembly 30484263 na 20 assembled-molecule 20 Chromosome AP040389.1 = NC_136256.1 Primary Assembly 30680329 na 21 assembled-molecule 21 Chromosome AP040390.1 = NC_136257.1 Primary Assembly 36041365 na 22 assembled-molecule 22 Chromosome AP040391.1 = NC_136258.1 Primary Assembly 31768016 na 23 assembled-molecule 23 Chromosome AP040392.1 = NC_136259.1 Primary Assembly 28752734 na 24 assembled-molecule 24 Chromosome AP040393.1 = NC_136260.1 Primary Assembly 25265049 na chr1_Y unlocalized-scaffold 1 Chromosome AP040395.1 = NW_027616335.1 Primary Assembly 11650696 na chr1_Y_2 unlocalized-scaffold 1 Chromosome AP040396.1 = NW_027616336.1 Primary Assembly 510712 na chr1_Y_3 unlocalized-scaffold 1 Chromosome AP040397.1 = NW_027616337.1 Primary Assembly 175322 na mtDNA assembled-molecule mtDNA Mitochondrion AP040394.1 <> na non-nuclear 16703 na