# Assembly name:  mPanOnc1 haplotype 2
# Organism name:  Panthera onca (jaguar)
# Isolate:  mPanOnc1
# Sex:  male
# Taxid:          9690
# BioSample:      SAMN44524170
# BioProject:     PRJNA1180586
# Submitter:      Genomics of Brazilian Biodiversity
# Date:           2025-01-08
# Assembly type:  haploid (haplotype 2)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBKGDX01
# Assembly method: Pipeasm v. 1.0
# Expected final version: Yes
# Genome coverage: 69x
# Sequencing technology: PacBio Revio
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_046562875.2
# RefSeq assembly accession: GCF_046562875.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCF_046562885.1 (haplotype 1)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_046562925.2	GCF_046562925.1	Primary Assembly
## 	GCF_032761955.1	non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
h2.Chr1	assembled-molecule	A1	Chromosome	CM102098.1	=	NC_138339.1	Primary Assembly	240584455	na
h2.Chr4	assembled-molecule	A2	Chromosome	CM102101.1	=	NC_138340.1	Primary Assembly	169299531	na
h2.Chr9	assembled-molecule	A3	Chromosome	CM102106.1	=	NC_138341.1	Primary Assembly	140190341	na
h2.Chr3	assembled-molecule	B1	Chromosome	CM102100.1	=	NC_138342.1	Primary Assembly	207625228	na
h2.Chr6	assembled-molecule	B2	Chromosome	CM102103.1	=	NC_138343.1	Primary Assembly	151425583	na
h2.Chr7	assembled-molecule	B3	Chromosome	CM102104.1	=	NC_138344.1	Primary Assembly	148260853	na
h2.Chr8	assembled-molecule	B4	Chromosome	CM102105.1	=	NC_138345.1	Primary Assembly	141596417	na
h2.Chr2	assembled-molecule	C1	Chromosome	CM102099.1	=	NC_138346.1	Primary Assembly	221445943	na
h2.Chr5	assembled-molecule	C2	Chromosome	CM102102.1	=	NC_138347.1	Primary Assembly	158770093	na
h2.Chr10	assembled-molecule	D1	Chromosome	CM102107.1	=	NC_138348.1	Primary Assembly	115122847	na
h2.Chr13	assembled-molecule	D2	Chromosome	CM102110.1	=	NC_138349.1	Primary Assembly	88721258	na
h2.Chr12	assembled-molecule	D3	Chromosome	CM102109.1	=	NC_138350.1	Primary Assembly	93566799	na
h2.Chr11	assembled-molecule	D4	Chromosome	CM102108.1	=	NC_138351.1	Primary Assembly	95161563	na
h2.Chr16	assembled-molecule	E1	Chromosome	CM102113.1	=	NC_138352.1	Primary Assembly	60206859	na
h2.Chr17	assembled-molecule	E2	Chromosome	CM102114.1	=	NC_138353.1	Primary Assembly	61687931	na
h2.Chr18	assembled-molecule	E3	Chromosome	CM102115.1	=	NC_138354.1	Primary Assembly	42278268	na
h2.Chr15	assembled-molecule	F1	Chromosome	CM102112.1	=	NC_138355.1	Primary Assembly	71983893	na
h2.Chr14	assembled-molecule	F2	Chromosome	CM102111.1	=	NC_138356.1	Primary Assembly	83619006	na
h2.ChrX	assembled-molecule	X	Chromosome	CM102116.1	=	NC_138357.1	Primary Assembly	130846311	na
h2.ChrY	assembled-molecule	Y	Chromosome	CM102117.1	=	NC_138358.1	Primary Assembly	30836324	na
h2.Chr16_ul_1	unlocalized-scaffold	E1	Chromosome	JBKGDX010000032.1	=	NW_027675808.1	Primary Assembly	1595242	na
h2.Chr16_ul_2	unlocalized-scaffold	E1	Chromosome	JBKGDX010000033.1	=	NW_027675816.1	Primary Assembly	1355683	na
h2.Chr16_ul_3	unlocalized-scaffold	E1	Chromosome	JBKGDX010000034.1	=	NW_027675817.1	Primary Assembly	1331819	na
h2.Chr16_ul_4	unlocalized-scaffold	E1	Chromosome	JBKGDX010000035.1	=	NW_027675818.1	Primary Assembly	1238143	na
h2.Chr16_ul_5	unlocalized-scaffold	E1	Chromosome	JBKGDX010000036.1	=	NW_027675819.1	Primary Assembly	1079318	na
h2.Chr16_ul_6	unlocalized-scaffold	E1	Chromosome	JBKGDX010000037.1	=	NW_027675820.1	Primary Assembly	1046741	na
h2.Chr16_ul_7	unlocalized-scaffold	E1	Chromosome	JBKGDX010000038.1	=	NW_027675821.1	Primary Assembly	998219	na
h2.Chr16_ul_8	unlocalized-scaffold	E1	Chromosome	JBKGDX010000039.1	=	NW_027675822.1	Primary Assembly	894202	na
h2.Chr16_ul_9	unlocalized-scaffold	E1	Chromosome	JBKGDX010000040.1	=	NW_027675823.1	Primary Assembly	827446	na
h2.Chr16_ul_10	unlocalized-scaffold	E1	Chromosome	JBKGDX010000041.1	=	NW_027675809.1	Primary Assembly	685426	na
h2.Chr16_ul_11	unlocalized-scaffold	E1	Chromosome	JBKGDX010000042.1	=	NW_027675810.1	Primary Assembly	621281	na
h2.Chr16_ul_12	unlocalized-scaffold	E1	Chromosome	JBKGDX010000043.1	=	NW_027675811.1	Primary Assembly	620398	na
h2.Chr16_ul_13	unlocalized-scaffold	E1	Chromosome	JBKGDX010000044.1	=	NW_027675812.1	Primary Assembly	438064	na
h2.Chr16_ul_14	unlocalized-scaffold	E1	Chromosome	JBKGDX010000045.1	=	NW_027675813.1	Primary Assembly	310747	na
h2.Chr16_ul_15	unlocalized-scaffold	E1	Chromosome	JBKGDX010000046.1	=	NW_027675814.1	Primary Assembly	260220	na
h2.Chr16_ul_16	unlocalized-scaffold	E1	Chromosome	JBKGDX010000047.1	=	NW_027675815.1	Primary Assembly	66617	na
h2.Chr18_unloc_1	unlocalized-scaffold	E3	Chromosome	JBKGDX010000019.1	=	NW_027675824.1	Primary Assembly	183671	na
h2.Chr15_ul_1	unlocalized-scaffold	F1	Chromosome	JBKGDX010000048.1	=	NW_027675825.1	Primary Assembly	88369	na
h2.Chr15_ul_2	unlocalized-scaffold	F1	Chromosome	JBKGDX010000049.1	=	NW_027675826.1	Primary Assembly	76762	na
h2.ChrY_unloc_1	unlocalized-scaffold	Y	Chromosome	JBKGDX010000021.1	=	NW_027675864.1	Primary Assembly	4000634	na
h2.ChrY_unloc_2	unlocalized-scaffold	Y	Chromosome	JBKGDX010000022.1	=	NW_027675865.1	Primary Assembly	2955009	na
h2.ChrY_unloc_3	unlocalized-scaffold	Y	Chromosome	JBKGDX010000023.1	=	NW_027675866.1	Primary Assembly	2919399	na
h2.ChrY_unloc_4	unlocalized-scaffold	Y	Chromosome	JBKGDX010000024.1	=	NW_027675867.1	Primary Assembly	2466858	na
h2.ChrY_unloc_5	unlocalized-scaffold	Y	Chromosome	JBKGDX010000025.1	=	NW_027675868.1	Primary Assembly	2144932	na
h2.ChrY_unloc_6	unlocalized-scaffold	Y	Chromosome	JBKGDX010000026.1	=	NW_027675869.1	Primary Assembly	1663128	na
h2.ChrY_unloc_7	unlocalized-scaffold	Y	Chromosome	JBKGDX010000027.1	=	NW_027675870.1	Primary Assembly	1066271	na
h2.ChrY_unloc_8	unlocalized-scaffold	Y	Chromosome	JBKGDX010000028.1	=	NW_027675871.1	Primary Assembly	876513	na
h2.ChrY_unloc_9	unlocalized-scaffold	Y	Chromosome	JBKGDX010000029.1	=	NW_027675872.1	Primary Assembly	514737	na
h2.ChrY_ul_1	unlocalized-scaffold	Y	Chromosome	JBKGDX010000031.1	=	NW_027675863.1	Primary Assembly	27874	na
h2.h2tg000074l_path	unplaced-scaffold	na	na	JBKGDX010000050.1	=	NW_027675827.1	Primary Assembly	32305	na
h2.h2tg000153l_path	unplaced-scaffold	na	na	JBKGDX010000051.1	=	NW_027675828.1	Primary Assembly	32148	na
h2.h2tg000170l_path	unplaced-scaffold	na	na	JBKGDX010000052.1	=	NW_027675829.1	Primary Assembly	102292	na
h2.h2tg000174l_path	unplaced-scaffold	na	na	JBKGDX010000053.1	=	NW_027675830.1	Primary Assembly	150830	na
h2.h2tg000175l_path	unplaced-scaffold	na	na	JBKGDX010000054.1	=	NW_027675831.1	Primary Assembly	200862	na
h2.h2tg000180l_path	unplaced-scaffold	na	na	JBKGDX010000055.1	=	NW_027675832.1	Primary Assembly	31647	na
h2.h2tg000182l_path	unplaced-scaffold	na	na	JBKGDX010000056.1	=	NW_027675833.1	Primary Assembly	146243	na
h2.h2tg000185l_path	unplaced-scaffold	na	na	JBKGDX010000057.1	=	NW_027675834.1	Primary Assembly	24300	na
h2.h2tg000192l_path	unplaced-scaffold	na	na	JBKGDX010000058.1	=	NW_027675835.1	Primary Assembly	22797	na
h2.h2tg000196l_path	unplaced-scaffold	na	na	JBKGDX010000059.1	=	NW_027675836.1	Primary Assembly	186036	na
h2.h2tg000200l_path	unplaced-scaffold	na	na	JBKGDX010000060.1	=	NW_027675837.1	Primary Assembly	44046	na
h2.h2tg000201l_path	unplaced-scaffold	na	na	JBKGDX010000061.1	=	NW_027675838.1	Primary Assembly	31471	na
h2.h2tg000203l_path	unplaced-scaffold	na	na	JBKGDX010000062.1	=	NW_027675839.1	Primary Assembly	58874	na
h2.h2tg000211c_path	unplaced-scaffold	na	na	JBKGDX010000063.1	=	NW_027675840.1	Primary Assembly	112448	na
h2.h2tg000212l_path	unplaced-scaffold	na	na	JBKGDX010000064.1	=	NW_027675841.1	Primary Assembly	168546	na
h2.h2tg000214l_path	unplaced-scaffold	na	na	JBKGDX010000065.1	=	NW_027675842.1	Primary Assembly	103053	na
h2.h2tg000217l_path	unplaced-scaffold	na	na	JBKGDX010000066.1	=	NW_027675843.1	Primary Assembly	52816	na
h2.h2tg000219l_path	unplaced-scaffold	na	na	JBKGDX010000067.1	=	NW_027675844.1	Primary Assembly	32395	na
h2.h2tg000220l_path	unplaced-scaffold	na	na	JBKGDX010000068.1	=	NW_027675845.1	Primary Assembly	111451	na
h2.h2tg000223l_path	unplaced-scaffold	na	na	JBKGDX010000069.1	=	NW_027675846.1	Primary Assembly	32038	na
h2.h2tg000224c_path	unplaced-scaffold	na	na	JBKGDX010000070.1	=	NW_027675847.1	Primary Assembly	111988	na
h2.h2tg000225l_path	unplaced-scaffold	na	na	JBKGDX010000071.1	=	NW_027675848.1	Primary Assembly	52324	na
h2.h2tg000228l_path	unplaced-scaffold	na	na	JBKGDX010000072.1	=	NW_027675849.1	Primary Assembly	33171	na
h2.h2tg000229l_path	unplaced-scaffold	na	na	JBKGDX010000073.1	=	NW_027675850.1	Primary Assembly	29857	na
h2.h2tg000232l_path	unplaced-scaffold	na	na	JBKGDX010000074.1	=	NW_027675851.1	Primary Assembly	33066	na
h2.h2tg000234l_path	unplaced-scaffold	na	na	JBKGDX010000075.1	=	NW_027675852.1	Primary Assembly	18515	na
h2.h2tg000235l_path	unplaced-scaffold	na	na	JBKGDX010000076.1	=	NW_027675853.1	Primary Assembly	32608	na
h2.h2tg000237l_path	unplaced-scaffold	na	na	JBKGDX010000077.1	=	NW_027675854.1	Primary Assembly	33045	na
h2.h2tg000238l_path	unplaced-scaffold	na	na	JBKGDX010000078.1	=	NW_027675855.1	Primary Assembly	108549	na
h2.h2tg000240l_path	unplaced-scaffold	na	na	JBKGDX010000079.1	=	NW_027675856.1	Primary Assembly	35374	na
h2.h2tg000241l_path	unplaced-scaffold	na	na	JBKGDX010000080.1	=	NW_027675857.1	Primary Assembly	28721	na
h2.h2tg000242l_path	unplaced-scaffold	na	na	JBKGDX010000081.1	=	NW_027675858.1	Primary Assembly	32970	na
h2.h2tg000244l_path	unplaced-scaffold	na	na	JBKGDX010000082.1	=	NW_027675859.1	Primary Assembly	55567	na
h2.h2tg000245l_path	unplaced-scaffold	na	na	JBKGDX010000083.1	=	NW_027675860.1	Primary Assembly	29632	na
h2.h2tg000246l_path	unplaced-scaffold	na	na	JBKGDX010000084.1	=	NW_027675861.1	Primary Assembly	33202	na
h2.h2tg000247l_path	unplaced-scaffold	na	na	JBKGDX010000085.1	=	NW_027675862.1	Primary Assembly	32050	na
MT	assembled-molecule	MT	Mitochondrion	na	<>	NC_022842.1	non-nuclear	17049	na