# Assembly name: M.murinus_Inina_mat1.0 # Organism name: Microcebus murinus (gray mouse lemur) # Isolate: Inina # Sex: female # Taxid: 30608 # BioSample: SAMN40455320 # BioProject: PRJNA1082316 # Submitter: Stanford University # Date: 2025-06-05 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBBJCL02 # Assembly method: HiFiasm v. 0.23.0; HapHiC v. 1.0.7; MitoZ v. 3.4 # Expected final version: yes # Genome coverage: 35x HiFi,32x ONT,75x Maternal Illumina,88x Paternal Illumina; (for mitogenome, 67x Illumina of index/Inina)x # Sequencing technology: PacBio Sequel; Oxford Nanopore PromethION; Illumina NovaSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040939455.2 # RefSeq assembly accession: GCF_040939455.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_040939475.2 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040939465.2 GCF_040939465.1 Primary Assembly ## GCA_050782795.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 1_hap2_Mmur4.0 assembled-molecule 1 Chromosome CM116271.1 = NC_134104.1 Primary Assembly 165216366 na 2_hap2_Mmur4.0 assembled-molecule 2 Chromosome CM116272.1 = NC_134105.1 Primary Assembly 125884960 na 3_hap2_Mmur4.0 assembled-molecule 3 Chromosome CM116273.1 = NC_134106.1 Primary Assembly 116024238 na 4_hap2_Mmur4.0 assembled-molecule 4 Chromosome CM116274.1 = NC_134107.1 Primary Assembly 115773176 na 5_hap2_Mmur4.0 assembled-molecule 5 Chromosome CM116275.1 = NC_134108.1 Primary Assembly 115002263 na 6_hap2_Mmur4.0 assembled-molecule 6 Chromosome CM116276.1 = NC_134109.1 Primary Assembly 112963858 na 7_hap2_Mmur4.0 assembled-molecule 7 Chromosome CM116277.1 = NC_134110.1 Primary Assembly 110420749 na 8_hap2_Mmur4.0 assembled-molecule 8 Chromosome CM116278.1 = NC_134111.1 Primary Assembly 109291184 na 9_hap2_Mmur4.0 assembled-molecule 9 Chromosome CM116279.1 = NC_134112.1 Primary Assembly 105226355 na 10_hap2_Mmur4.0 assembled-molecule 10 Chromosome CM116280.1 = NC_134113.1 Primary Assembly 104151055 na 11_hap2_Mmur4.0 assembled-molecule 11 Chromosome CM116281.1 = NC_134114.1 Primary Assembly 103995934 na 12_hap2_Mmur4.0 assembled-molecule 12 Chromosome CM116282.1 = NC_134115.1 Primary Assembly 93862056 na 13_hap2_Mmur4.0 assembled-molecule 13 Chromosome CM116283.1 = NC_134116.1 Primary Assembly 84419096 na 14_hap2_Mmur4.0 assembled-molecule 14 Chromosome CM116284.1 = NC_134117.1 Primary Assembly 83680371 na 15_hap2_Mmur4.0 assembled-molecule 15 Chromosome CM116285.1 = NC_134118.1 Primary Assembly 79408728 na 16_hap2_Mmur4.0 assembled-molecule 16 Chromosome CM116286.1 = NC_134119.1 Primary Assembly 73815799 na 17_hap2_Mmur4.0 assembled-molecule 17 Chromosome CM116287.1 = NC_134120.1 Primary Assembly 61071621 na 18_hap2_Mmur4.0 assembled-molecule 18 Chromosome CM116288.1 = NC_134121.1 Primary Assembly 60188171 na 19_hap2_Mmur4.0 assembled-molecule 19 Chromosome CM116289.1 = NC_134122.1 Primary Assembly 52870998 na 20_hap2_Mmur4.0 assembled-molecule 20 Chromosome CM116290.1 = NC_134123.1 Primary Assembly 46402064 na 21_hap2_Mmur4.0 assembled-molecule 21 Chromosome CM116291.1 = NC_134124.1 Primary Assembly 42107721 na 22_hap2_Mmur4.0 assembled-molecule 22 Chromosome CM116292.1 = NC_134125.1 Primary Assembly 35360361 na 23_hap2_Mmur4.0 assembled-molecule 23 Chromosome CM116293.1 = NC_134126.1 Primary Assembly 35308892 na 24_hap2_Mmur4.0 assembled-molecule 24 Chromosome CM116294.1 = NC_134127.1 Primary Assembly 32238067 na 25_hap2_Mmur4.0 assembled-molecule 25 Chromosome CM116295.1 = NC_134128.1 Primary Assembly 28153134 na 26_hap2_Mmur4.0 assembled-molecule 26 Chromosome CM116296.1 = NC_134129.1 Primary Assembly 21942326 na 27_hap2_Mmur4.0 assembled-molecule 27 Chromosome CM116297.1 = NC_134130.1 Primary Assembly 21451688 na 28_hap2_Mmur4.0 assembled-molecule 28 Chromosome CM116298.1 = NC_134131.1 Primary Assembly 17670872 na 29_hap2_Mmur4.0 assembled-molecule 29 Chromosome CM116299.1 = NC_134132.1 Primary Assembly 16552445 na 30_hap2_Mmur4.0 assembled-molecule 30 Chromosome CM116300.1 = NC_134133.1 Primary Assembly 9637658 na 31_hap2_Mmur4.0 assembled-molecule 31 Chromosome CM116301.1 = NC_134134.1 Primary Assembly 6210898 na 32_hap2_Mmur4.0 assembled-molecule 32 Chromosome CM116302.1 = NC_134135.1 Primary Assembly 5325150 na X_hap2_Mmur4.0 assembled-molecule X Chromosome CM116303.1 = NC_134136.1 Primary Assembly 128966116 na scaf001_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000034.1 = NW_027438947.1 Primary Assembly 4131809 na scaf002_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000035.1 = NW_027438948.1 Primary Assembly 1532906 na scaf003_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000036.1 = NW_027438949.1 Primary Assembly 1516703 na scaf004_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000037.1 = NW_027438950.1 Primary Assembly 1427378 na scaf005_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000038.1 = NW_027438951.1 Primary Assembly 1227003 na scaf006_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000039.1 = NW_027438952.1 Primary Assembly 1221709 na scaf007_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000040.1 = NW_027438953.1 Primary Assembly 1206583 na scaf008_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000041.1 = NW_027438954.1 Primary Assembly 1194855 na scaf009_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000042.1 = NW_027438955.1 Primary Assembly 1096713 na scaf010_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000043.1 = NW_027438956.1 Primary Assembly 1051315 na scaf011_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000044.1 = NW_027438957.1 Primary Assembly 890466 na scaf012_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000045.1 = NW_027438958.1 Primary Assembly 594702 na scaf013_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000046.1 = NW_027438959.1 Primary Assembly 593383 na scaf014_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000047.1 = NW_027438960.1 Primary Assembly 525465 na scaf015_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000048.1 = NW_027438961.1 Primary Assembly 503870 na scaf016_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000049.1 = NW_027438962.1 Primary Assembly 500229 na scaf017_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000050.1 = NW_027438963.1 Primary Assembly 443987 na scaf018_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000051.1 = NW_027438964.1 Primary Assembly 433711 na scaf019_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000052.1 = NW_027438965.1 Primary Assembly 420306 na scaf020_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000053.1 = NW_027438966.1 Primary Assembly 412472 na scaf021_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000054.1 = NW_027438967.1 Primary Assembly 405622 na scaf022_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000055.1 = NW_027438968.1 Primary Assembly 370487 na scaf023_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000056.1 = NW_027438969.1 Primary Assembly 360588 na scaf024_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000057.1 = NW_027438970.1 Primary Assembly 353953 na scaf025_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000058.1 = NW_027438971.1 Primary Assembly 352130 na scaf026_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000059.1 = NW_027438972.1 Primary Assembly 322163 na scaf027_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000060.1 = NW_027438973.1 Primary Assembly 303529 na scaf028_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000061.1 = NW_027438974.1 Primary Assembly 303249 na scaf029_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000062.1 = NW_027438975.1 Primary Assembly 264354 na scaf030_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000063.1 = NW_027438976.1 Primary Assembly 262629 na scaf031_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000064.1 = NW_027438977.1 Primary Assembly 239715 na scaf032_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000065.1 = NW_027438978.1 Primary Assembly 223714 na scaf033_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000066.1 = NW_027438979.1 Primary Assembly 221993 na scaf034_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000067.1 = NW_027438980.1 Primary Assembly 219639 na scaf035_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000068.1 = NW_027438981.1 Primary Assembly 208089 na scaf036_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000069.1 = NW_027438982.1 Primary Assembly 206761 na scaf037_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000070.1 = NW_027438983.1 Primary Assembly 202387 na scaf038_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000071.1 = NW_027438984.1 Primary Assembly 191613 na scaf039_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000072.1 = NW_027438985.1 Primary Assembly 190292 na scaf040_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000073.1 = NW_027438986.1 Primary Assembly 187757 na scaf041_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000074.1 = NW_027438987.1 Primary Assembly 184046 na scaf042_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000075.1 = NW_027438988.1 Primary Assembly 182972 na scaf043_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000076.1 = NW_027438989.1 Primary Assembly 177806 na scaf044_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000077.1 = NW_027438990.1 Primary Assembly 155011 na scaf045_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000078.1 = NW_027438991.1 Primary Assembly 150389 na scaf046_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000079.1 = NW_027438992.1 Primary Assembly 134983 na scaf047_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000080.1 = NW_027438993.1 Primary Assembly 134590 na scaf048_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000081.1 = NW_027438994.1 Primary Assembly 115320 na scaf049_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000082.1 = NW_027438995.1 Primary Assembly 109586 na scaf050_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000083.1 = NW_027438996.1 Primary Assembly 107357 na scaf051_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000084.1 = NW_027438997.1 Primary Assembly 104392 na scaf052_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000085.1 = NW_027438998.1 Primary Assembly 102770 na scaf053_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000086.1 = NW_027438999.1 Primary Assembly 97883 na scaf054_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000087.1 = NW_027439000.1 Primary Assembly 95057 na scaf055_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000088.1 = NW_027439001.1 Primary Assembly 93884 na scaf056_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000089.1 = NW_027439002.1 Primary Assembly 91410 na scaf057_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000090.1 = NW_027439003.1 Primary Assembly 89116 na scaf058_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000091.1 = NW_027439004.1 Primary Assembly 88937 na scaf059_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000092.1 = NW_027439005.1 Primary Assembly 87806 na scaf060_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000093.1 = NW_027439006.1 Primary Assembly 87620 na scaf061_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000094.1 = NW_027439007.1 Primary Assembly 84176 na scaf062_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000095.1 = NW_027439008.1 Primary Assembly 83599 na scaf063_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000096.1 = NW_027439009.1 Primary Assembly 77065 na scaf064_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000097.1 = NW_027439010.1 Primary Assembly 75224 na scaf065_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000098.1 = NW_027439011.1 Primary Assembly 71877 na scaf066_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000099.1 = NW_027439012.1 Primary Assembly 69332 na scaf067_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000100.1 = NW_027439013.1 Primary Assembly 67531 na scaf068_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000101.1 = NW_027439014.1 Primary Assembly 67126 na scaf069_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000102.1 = NW_027439015.1 Primary Assembly 65346 na scaf070_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000103.1 = NW_027439016.1 Primary Assembly 63426 na scaf071_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000104.1 = NW_027439017.1 Primary Assembly 59673 na scaf072_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000105.1 = NW_027439018.1 Primary Assembly 59520 na scaf073_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000106.1 = NW_027439019.1 Primary Assembly 58886 na scaf074_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000107.1 = NW_027439020.1 Primary Assembly 56132 na scaf075_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000108.1 = NW_027439021.1 Primary Assembly 55086 na scaf076_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000109.1 = NW_027439022.1 Primary Assembly 53858 na scaf077_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000110.1 = NW_027439023.1 Primary Assembly 50509 na scaf078_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000111.1 = NW_027439024.1 Primary Assembly 50398 na scaf079_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000112.1 = NW_027439025.1 Primary Assembly 49106 na scaf080_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000113.1 = NW_027439026.1 Primary Assembly 48972 na scaf081_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000114.1 = NW_027439027.1 Primary Assembly 48606 na scaf082_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000115.1 = NW_027439028.1 Primary Assembly 44501 na scaf083_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000116.1 = NW_027439029.1 Primary Assembly 43014 na scaf084_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000117.1 = NW_027439030.1 Primary Assembly 39482 na scaf085_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000118.1 = NW_027439031.1 Primary Assembly 34794 na scaf086_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000119.1 = NW_027439032.1 Primary Assembly 33182 na scaf087_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000120.1 = NW_027439033.1 Primary Assembly 32812 na scaf088_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000121.1 = NW_027439034.1 Primary Assembly 31051 na scaf089_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000122.1 = NW_027439035.1 Primary Assembly 29270 na scaf090_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000123.1 = NW_027439036.1 Primary Assembly 26184 na scaf091_hap2_Mmur4.0 unplaced-scaffold na na JBBJCL020000124.1 = NW_027439037.1 Primary Assembly 18227 na MT_Mmur4.0 assembled-molecule MT Mitochondrion CM116337.1 <> na non-nuclear 17119 na