# Assembly name:  mNeoNeb1.pri
# Organism name:  Neofelis nebulosa (Clouded leopard)
# Isolate:  mNeoNeb1
# Sex:  male
# Taxid:          61452
# BioSample:      SAMN31801981
# BioProject:     PRJNA915742
# Submitter:      Vertebrate Genomes Project
# Date:           2023-01-31
# Assembly type:  haploid (principal pseudohaplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JAQMCS01
# Assembly method: HiFiasm v. 0.16.1 + galaxy2; purge_dups v. 1.2.5 + galaxy4; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy2
# Expected final version: no
# Genome coverage: 32.2x
# Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2
# RefSeq category: Representative Genome
# GenBank assembly accession: GCA_028018385.1
# RefSeq assembly accession: GCF_028018385.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_028018655.1 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_028018535.1	GCF_028018535.1	Primary Assembly
## GCA_028018585.1		non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM051599.1	=	NC_080782.1	Primary Assembly	243997075	na
SUPER_2	assembled-molecule	2	Chromosome	CM051600.1	=	NC_080783.1	Primary Assembly	222427791	na
SUPER_3	assembled-molecule	3	Chromosome	CM051601.1	=	NC_080784.1	Primary Assembly	207471084	na
SUPER_4	assembled-molecule	4	Chromosome	CM051602.1	=	NC_080785.1	Primary Assembly	170163164	na
SUPER_5	assembled-molecule	5	Chromosome	CM051603.1	=	NC_080786.1	Primary Assembly	159605645	na
SUPER_6	assembled-molecule	6	Chromosome	CM051604.1	=	NC_080787.1	Primary Assembly	156028032	na
SUPER_7	assembled-molecule	7	Chromosome	CM051605.1	=	NC_080788.1	Primary Assembly	150204169	na
SUPER_8	assembled-molecule	8	Chromosome	CM051606.1	=	NC_080789.1	Primary Assembly	142999991	na
SUPER_9	assembled-molecule	9	Chromosome	CM051607.1	=	NC_080790.1	Primary Assembly	141813369	na
SUPER_10	assembled-molecule	10	Chromosome	CM051608.1	=	NC_080791.1	Primary Assembly	115744418	na
SUPER_11	assembled-molecule	11	Chromosome	CM051609.1	=	NC_080792.1	Primary Assembly	95678116	na
SUPER_12	assembled-molecule	12	Chromosome	CM051610.1	=	NC_080793.1	Primary Assembly	95590950	na
SUPER_13	assembled-molecule	13	Chromosome	CM051611.1	=	NC_080794.1	Primary Assembly	92698642	na
SUPER_14	assembled-molecule	14	Chromosome	CM051612.1	=	NC_080795.1	Primary Assembly	83647936	na
SUPER_15	assembled-molecule	15	Chromosome	CM051613.1	=	NC_080796.1	Primary Assembly	75977291	na
SUPER_16	assembled-molecule	16	Chromosome	CM051614.1	=	NC_080797.1	Primary Assembly	66162313	na
SUPER_17	assembled-molecule	17	Chromosome	CM051615.1	=	NC_080798.1	Primary Assembly	62726519	na
SUPER_18	assembled-molecule	18	Chromosome	CM051616.1	=	NC_080799.1	Primary Assembly	46369777	na
SUPER_X	assembled-molecule	X	Chromosome	CM051617.1	=	NC_080800.1	Primary Assembly	128487651	na
SUPER_Y	assembled-molecule	Y	Chromosome	CM051618.1	=	NC_080801.1	Primary Assembly	7351810	na
SUPER_Y_unloc_1	unlocalized-scaffold	Y	Chromosome	JAQMCS010000004.1	=	NW_026691917.1	Primary Assembly	1825336	na
SUPER_Y_unloc_2	unlocalized-scaffold	Y	Chromosome	JAQMCS010000005.1	=	NW_026691918.1	Primary Assembly	520670	na
SUPER_Y_unloc_3	unlocalized-scaffold	Y	Chromosome	JAQMCS010000006.1	=	NW_026691919.1	Primary Assembly	342679	na
scaffold_62	unplaced-scaffold	na	na	JAQMCS010000025.1	=	NW_026691907.1	Primary Assembly	143626	na
scaffold_64	unplaced-scaffold	na	na	JAQMCS010000026.1	=	NW_026691908.1	Primary Assembly	70849	na
scaffold_70	unplaced-scaffold	na	na	JAQMCS010000027.1	=	NW_026691913.1	Primary Assembly	31974	na
scaffold_73	unplaced-scaffold	na	na	JAQMCS010000028.1	=	NW_026691916.1	Primary Assembly	17537	na
scaffold_66	unplaced-scaffold	na	na	JAQMCS010000029.1	=	NW_026691910.1	Primary Assembly	49808	na
scaffold_67	unplaced-scaffold	na	na	JAQMCS010000030.1	=	NW_026691911.1	Primary Assembly	43272	na
scaffold_65	unplaced-scaffold	na	na	JAQMCS010000031.1	=	NW_026691909.1	Primary Assembly	56257	na
scaffold_68	unplaced-scaffold	na	na	JAQMCS010000032.1	=	NW_026691912.1	Primary Assembly	41991	na
scaffold_71	unplaced-scaffold	na	na	JAQMCS010000033.1	=	NW_026691914.1	Primary Assembly	28703	na
scaffold_72	unplaced-scaffold	na	na	JAQMCS010000034.1	=	NW_026691915.1	Primary Assembly	26648	na
ptg000015l_rc_rotated	assembled-molecule	MT	Mitochondrion	CM051664.1	<>	na	non-nuclear	16839	na