# Assembly name: mSunEtr1.pri.cur # Organism name: Suncus etruscus (white-toothed pygmy shrew) # Isolate: mSunEtr1 # Sex: male # Taxid: 109475 # BioSample: SAMN28420931 # BioProject: PRJNA838699 # Submitter: Vertebrate Genomes Project # Date: 2022-07-06 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAMYDX01 # Assembly method: FALCON v. 2.0.2; FALCON-Unzip v. 8.0.1; purge_dups v. 1.0.0; scaff10x v. 2.0.3; bionano solve v. 3.4.0; salsa v. 2.2; gcpp v. 2.0.2; merfin v. 1.0; freebayes v. 1.3.1 # Expected final version: no # Genome coverage: 142.65x # Sequencing technology: PacBio Sequel CLR; 10X linked reads; Bionano DLS; Arima Hi-C v1 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_024139225.1 # RefSeq assembly accession: GCF_024139225.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_024140225.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_024139255.1 GCF_024139255.1 Primary Assembly ## GCA_024139265.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM043972.1 = NC_064848.1 Primary Assembly 208244741 na SUPER_2 assembled-molecule 2 Chromosome CM043973.1 = NC_064849.1 Primary Assembly 171222326 na SUPER_3 assembled-molecule 3 Chromosome CM043974.1 = NC_064850.1 Primary Assembly 170948070 na SUPER_4 assembled-molecule 4 Chromosome CM043975.1 = NC_064851.1 Primary Assembly 168485645 na SUPER_5 assembled-molecule 5 Chromosome CM043976.1 = NC_064852.1 Primary Assembly 157105255 na SUPER_6 assembled-molecule 6 Chromosome CM043977.1 = NC_064853.1 Primary Assembly 137512108 na SUPER_7 assembled-molecule 7 Chromosome CM043978.1 = NC_064854.1 Primary Assembly 131952995 na SUPER_8 assembled-molecule 8 Chromosome CM043979.1 = NC_064855.1 Primary Assembly 124860752 na SUPER_9 assembled-molecule 9 Chromosome CM043980.1 = NC_064856.1 Primary Assembly 116298652 na SUPER_10 assembled-molecule 10 Chromosome CM043981.1 = NC_064857.1 Primary Assembly 113073205 na SUPER_11 assembled-molecule 11 Chromosome CM043982.1 = NC_064858.1 Primary Assembly 109269130 na SUPER_12 assembled-molecule 12 Chromosome CM043983.1 = NC_064859.1 Primary Assembly 104750940 na SUPER_13 assembled-molecule 13 Chromosome CM043984.1 = NC_064860.1 Primary Assembly 99890541 na SUPER_14 assembled-molecule 14 Chromosome CM043985.1 = NC_064861.1 Primary Assembly 97742847 na SUPER_15 assembled-molecule 15 Chromosome CM043986.1 = NC_064862.1 Primary Assembly 93472198 na SUPER_16 assembled-molecule 16 Chromosome CM043987.1 = NC_064863.1 Primary Assembly 87454589 na SUPER_17 assembled-molecule 17 Chromosome CM043988.1 = NC_064864.1 Primary Assembly 76877584 na SUPER_18 assembled-molecule 18 Chromosome CM043989.1 = NC_064865.1 Primary Assembly 64036631 na SUPER_19 assembled-molecule 19 Chromosome CM043990.1 = NC_064866.1 Primary Assembly 44859089 na SUPER_20 assembled-molecule 20 Chromosome CM043991.1 = NC_064867.1 Primary Assembly 44563896 na SUPER_X assembled-molecule X Chromosome CM043992.1 = NC_064868.1 Primary Assembly 131976403 na SUPER_Y assembled-molecule Y Chromosome CM043993.1 = NC_064869.1 Primary Assembly 1388264 na SUPER_13_unloc_1 unlocalized-scaffold 13 Chromosome JAMYDX010000011.1 = NW_026060285.1 Primary Assembly 38104 na SUPER_15_unloc_1 unlocalized-scaffold 15 Chromosome JAMYDX010000049.1 = NW_026060286.1 Primary Assembly 832638 na SUPER_15_unloc_2 unlocalized-scaffold 15 Chromosome JAMYDX010000050.1 = NW_026060296.1 Primary Assembly 161722 na SUPER_15_unloc_3 unlocalized-scaffold 15 Chromosome JAMYDX010000051.1 = NW_026060297.1 Primary Assembly 156043 na SUPER_15_unloc_4 unlocalized-scaffold 15 Chromosome JAMYDX010000052.1 = NW_026060298.1 Primary Assembly 152953 na SUPER_15_unloc_5 unlocalized-scaffold 15 Chromosome JAMYDX010000053.1 = NW_026060299.1 Primary Assembly 145585 na SUPER_15_unloc_6 unlocalized-scaffold 15 Chromosome JAMYDX010000054.1 = NW_026060300.1 Primary Assembly 142274 na SUPER_15_unloc_7 unlocalized-scaffold 15 Chromosome JAMYDX010000055.1 = NW_026060301.1 Primary Assembly 137500 na SUPER_15_unloc_8 unlocalized-scaffold 15 Chromosome JAMYDX010000056.1 = NW_026060302.1 Primary Assembly 117034 na SUPER_15_unloc_9 unlocalized-scaffold 15 Chromosome JAMYDX010000057.1 = NW_026060303.1 Primary Assembly 72542 na SUPER_15_unloc_11 unlocalized-scaffold 15 Chromosome JAMYDX010000058.1 = NW_026060288.1 Primary Assembly 58526 na SUPER_15_unloc_12 unlocalized-scaffold 15 Chromosome JAMYDX010000059.1 = NW_026060289.1 Primary Assembly 57394 na SUPER_15_unloc_13 unlocalized-scaffold 15 Chromosome JAMYDX010000060.1 = NW_026060290.1 Primary Assembly 56594 na SUPER_15_unloc_10 unlocalized-scaffold 15 Chromosome JAMYDX010000061.1 = NW_026060287.1 Primary Assembly 63564 na SUPER_15_unloc_14 unlocalized-scaffold 15 Chromosome JAMYDX010000062.1 = NW_026060291.1 Primary Assembly 49794 na SUPER_15_unloc_17 unlocalized-scaffold 15 Chromosome JAMYDX010000063.1 = NW_026060294.1 Primary Assembly 9167 na SUPER_15_unloc_16 unlocalized-scaffold 15 Chromosome JAMYDX010000064.1 = NW_026060293.1 Primary Assembly 18956 na SUPER_15_unloc_18 unlocalized-scaffold 15 Chromosome JAMYDX010000065.1 = NW_026060295.1 Primary Assembly 2499 na SUPER_15_unloc_15 unlocalized-scaffold 15 Chromosome JAMYDX010000066.1 = NW_026060292.1 Primary Assembly 29575 na SUPER_X_unloc_6 unlocalized-scaffold X Chromosome JAMYDX010000016.1 = NW_026060326.1 Primary Assembly 450484 na SUPER_X_unloc_24 unlocalized-scaffold X Chromosome JAMYDX010000018.1 = NW_026060320.1 Primary Assembly 26595 na SUPER_X_unloc_25 unlocalized-scaffold X Chromosome JAMYDX010000019.1 = NW_026060321.1 Primary Assembly 25819 na SUPER_X_unloc_20 unlocalized-scaffold X Chromosome JAMYDX010000020.1 = NW_026060316.1 Primary Assembly 52425 na SUPER_X_unloc_21 unlocalized-scaffold X Chromosome JAMYDX010000021.1 = NW_026060317.1 Primary Assembly 49063 na SUPER_X_unloc_8 unlocalized-scaffold X Chromosome JAMYDX010000022.1 = NW_026060328.1 Primary Assembly 276069 na SUPER_X_unloc_10 unlocalized-scaffold X Chromosome JAMYDX010000024.1 = NW_026060305.1 Primary Assembly 158425 na SUPER_X_unloc_12 unlocalized-scaffold X Chromosome JAMYDX010000025.1 = NW_026060307.1 Primary Assembly 129184 na SUPER_X_unloc_13 unlocalized-scaffold X Chromosome JAMYDX010000026.1 = NW_026060308.1 Primary Assembly 128595 na SUPER_X_unloc_14 unlocalized-scaffold X Chromosome JAMYDX010000027.1 = NW_026060309.1 Primary Assembly 116508 na SUPER_X_unloc_15 unlocalized-scaffold X Chromosome JAMYDX010000028.1 = NW_026060310.1 Primary Assembly 105049 na SUPER_X_unloc_26 unlocalized-scaffold X Chromosome JAMYDX010000029.1 = NW_026060322.1 Primary Assembly 18042 na SUPER_X_unloc_16 unlocalized-scaffold X Chromosome JAMYDX010000030.1 = NW_026060311.1 Primary Assembly 104057 na SUPER_X_unloc_17 unlocalized-scaffold X Chromosome JAMYDX010000031.1 = NW_026060312.1 Primary Assembly 99261 na SUPER_X_unloc_23 unlocalized-scaffold X Chromosome JAMYDX010000032.1 = NW_026060319.1 Primary Assembly 28078 na SUPER_X_unloc_18 unlocalized-scaffold X Chromosome JAMYDX010000033.1 = NW_026060313.1 Primary Assembly 91842 na SUPER_X_unloc_22 unlocalized-scaffold X Chromosome JAMYDX010000034.1 = NW_026060318.1 Primary Assembly 46253 na SUPER_X_unloc_3 unlocalized-scaffold X Chromosome JAMYDX010000035.1 = NW_026060323.1 Primary Assembly 985502 na SUPER_X_unloc_4 unlocalized-scaffold X Chromosome JAMYDX010000036.1 = NW_026060324.1 Primary Assembly 741386 na SUPER_X_unloc_11 unlocalized-scaffold X Chromosome JAMYDX010000037.1 = NW_026060306.1 Primary Assembly 129347 na SUPER_X_unloc_1 unlocalized-scaffold X Chromosome JAMYDX010000038.1 = NW_026060304.1 Primary Assembly 2825963 na SUPER_X_unloc_19 unlocalized-scaffold X Chromosome JAMYDX010000039.1 = NW_026060314.1 Primary Assembly 88546 na SUPER_X_unloc_9 unlocalized-scaffold X Chromosome JAMYDX010000040.1 = NW_026060329.1 Primary Assembly 200498 na SUPER_X_unloc_7 unlocalized-scaffold X Chromosome JAMYDX010000041.1 = NW_026060327.1 Primary Assembly 395283 na SUPER_X_unloc_5 unlocalized-scaffold X Chromosome JAMYDX010000042.1 = NW_026060325.1 Primary Assembly 576292 na SUPER_X_unloc_2 unlocalized-scaffold X Chromosome JAMYDX010000043.1 = NW_026060315.1 Primary Assembly 2772188 na SUPER_Y_unloc_3 unlocalized-scaffold Y Chromosome JAMYDX010000015.1 = NW_026060332.1 Primary Assembly 29858 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JAMYDX010000017.1 = NW_026060330.1 Primary Assembly 196977 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome JAMYDX010000023.1 = NW_026060331.1 Primary Assembly 172944 na U_1 unplaced-scaffold na na JAMYDX010000071.1 = NW_026060333.1 Primary Assembly 43586 na scaffold_76_ctg1 unplaced-scaffold na na JAMYDX010000072.1 = NW_026060398.1 Primary Assembly 76363 na scaffold_78_ctg1 unplaced-scaffold na na JAMYDX010000073.1 = NW_026060399.1 Primary Assembly 73158 na scaffold_81_ctg1 unplaced-scaffold na na JAMYDX010000074.1 = NW_026060400.1 Primary Assembly 68279 na scaffold_82_ctg1 unplaced-scaffold na na JAMYDX010000075.1 = NW_026060401.1 Primary Assembly 66923 na scaffold_83_ctg1 unplaced-scaffold na na JAMYDX010000076.1 = NW_026060402.1 Primary Assembly 66145 na scaffold_85_ctg1 unplaced-scaffold na na JAMYDX010000077.1 = NW_026060403.1 Primary Assembly 64749 na scaffold_88_ctg1 unplaced-scaffold na na JAMYDX010000078.1 = NW_026060404.1 Primary Assembly 59156 na scaffold_89_ctg1 unplaced-scaffold na na JAMYDX010000079.1 = NW_026060405.1 Primary Assembly 58574 na scaffold_93_ctg1 unplaced-scaffold na na JAMYDX010000080.1 = NW_026060406.1 Primary Assembly 56289 na scaffold_94_ctg1 unplaced-scaffold na na JAMYDX010000081.1 = NW_026060407.1 Primary Assembly 55924 na scaffold_96_ctg1 unplaced-scaffold na na JAMYDX010000082.1 = NW_026060408.1 Primary Assembly 55930 na scaffold_97_ctg1 unplaced-scaffold na na JAMYDX010000083.1 = NW_026060409.1 Primary Assembly 56304 na scaffold_100_ctg1 unplaced-scaffold na na JAMYDX010000084.1 = NW_026060334.1 Primary Assembly 50914 na scaffold_103_ctg1 unplaced-scaffold na na JAMYDX010000085.1 = NW_026060335.1 Primary Assembly 48895 na scaffold_104_ctg1 unplaced-scaffold na na JAMYDX010000086.1 = NW_026060336.1 Primary Assembly 48469 na scaffold_105_ctg1 unplaced-scaffold na na JAMYDX010000087.1 = NW_026060337.1 Primary Assembly 48161 na scaffold_106_ctg1 unplaced-scaffold na na JAMYDX010000088.1 = NW_026060338.1 Primary Assembly 46947 na scaffold_107_ctg1 unplaced-scaffold na na JAMYDX010000089.1 = NW_026060339.1 Primary Assembly 46914 na scaffold_108_ctg1 unplaced-scaffold na na JAMYDX010000090.1 = NW_026060340.1 Primary Assembly 46832 na scaffold_111_ctg1 unplaced-scaffold na na JAMYDX010000091.1 = NW_026060341.1 Primary Assembly 43848 na scaffold_112_ctg1 unplaced-scaffold na na JAMYDX010000092.1 = NW_026060342.1 Primary Assembly 43222 na scaffold_113_ctg1 unplaced-scaffold na na JAMYDX010000093.1 = NW_026060343.1 Primary Assembly 43112 na scaffold_115_ctg1 unplaced-scaffold na na JAMYDX010000094.1 = NW_026060344.1 Primary Assembly 41866 na scaffold_117_ctg1 unplaced-scaffold na na JAMYDX010000095.1 = NW_026060345.1 Primary Assembly 40319 na scaffold_119_ctg1 unplaced-scaffold na na JAMYDX010000096.1 = NW_026060346.1 Primary Assembly 40080 na scaffold_120_ctg1 unplaced-scaffold na na JAMYDX010000097.1 = NW_026060347.1 Primary Assembly 39588 na scaffold_122_ctg1 unplaced-scaffold na na JAMYDX010000098.1 = NW_026060348.1 Primary Assembly 37579 na scaffold_124_ctg1 unplaced-scaffold na na JAMYDX010000099.1 = NW_026060349.1 Primary Assembly 35740 na scaffold_125_ctg1 unplaced-scaffold na na JAMYDX010000100.1 = NW_026060350.1 Primary Assembly 34692 na scaffold_126_ctg1 unplaced-scaffold na na JAMYDX010000101.1 = NW_026060351.1 Primary Assembly 34348 na scaffold_127_ctg1 unplaced-scaffold na na JAMYDX010000102.1 = NW_026060352.1 Primary Assembly 33491 na scaffold_128_ctg1 unplaced-scaffold na na JAMYDX010000103.1 = NW_026060353.1 Primary Assembly 32954 na scaffold_129_ctg1 unplaced-scaffold na na JAMYDX010000104.1 = NW_026060354.1 Primary Assembly 31721 na scaffold_130_ctg1 unplaced-scaffold na na JAMYDX010000105.1 = NW_026060355.1 Primary Assembly 31332 na scaffold_132_ctg1 unplaced-scaffold na na JAMYDX010000106.1 = NW_026060356.1 Primary Assembly 30680 na scaffold_135_ctg1 unplaced-scaffold na na JAMYDX010000107.1 = NW_026060357.1 Primary Assembly 29642 na scaffold_136_ctg1 unplaced-scaffold na na JAMYDX010000108.1 = NW_026060358.1 Primary Assembly 29308 na scaffold_137_ctg1 unplaced-scaffold na na JAMYDX010000109.1 = NW_026060359.1 Primary Assembly 28197 na scaffold_139_ctg1 unplaced-scaffold na na JAMYDX010000110.1 = NW_026060360.1 Primary Assembly 27629 na scaffold_140_ctg1 unplaced-scaffold na na JAMYDX010000111.1 = NW_026060361.1 Primary Assembly 26700 na scaffold_142_ctg1 unplaced-scaffold na na JAMYDX010000112.1 = NW_026060362.1 Primary Assembly 26023 na scaffold_144_ctg1 unplaced-scaffold na na JAMYDX010000113.1 = NW_026060363.1 Primary Assembly 24486 na scaffold_145_ctg1 unplaced-scaffold na na JAMYDX010000114.1 = NW_026060364.1 Primary Assembly 23752 na scaffold_146_ctg1 unplaced-scaffold na na JAMYDX010000115.1 = NW_026060365.1 Primary Assembly 22435 na scaffold_148_ctg1 unplaced-scaffold na na JAMYDX010000116.1 = NW_026060366.1 Primary Assembly 22093 na scaffold_149_ctg1 unplaced-scaffold na na JAMYDX010000117.1 = NW_026060367.1 Primary Assembly 22089 na scaffold_150_ctg1 unplaced-scaffold na na JAMYDX010000118.1 = NW_026060368.1 Primary Assembly 21307 na scaffold_151_ctg1 unplaced-scaffold na na JAMYDX010000119.1 = NW_026060369.1 Primary Assembly 20257 na scaffold_152_ctg1 unplaced-scaffold na na JAMYDX010000120.1 = NW_026060370.1 Primary Assembly 19438 na scaffold_153_ctg1 unplaced-scaffold na na JAMYDX010000121.1 = NW_026060371.1 Primary Assembly 19332 na scaffold_155_ctg1 unplaced-scaffold na na JAMYDX010000122.1 = NW_026060372.1 Primary Assembly 18889 na scaffold_156_ctg1 unplaced-scaffold na na JAMYDX010000123.1 = NW_026060373.1 Primary Assembly 18314 na scaffold_157_ctg1 unplaced-scaffold na na JAMYDX010000124.1 = NW_026060374.1 Primary Assembly 18045 na scaffold_159_ctg1 unplaced-scaffold na na JAMYDX010000125.1 = NW_026060375.1 Primary Assembly 17705 na scaffold_160_ctg1 unplaced-scaffold na na JAMYDX010000126.1 = NW_026060376.1 Primary Assembly 16925 na scaffold_161_ctg1 unplaced-scaffold na na JAMYDX010000127.1 = NW_026060377.1 Primary Assembly 13021 na scaffold_162_ctg1 unplaced-scaffold na na JAMYDX010000128.1 = NW_026060378.1 Primary Assembly 12636 na scaffold_163_ctg1 unplaced-scaffold na na JAMYDX010000129.1 = NW_026060379.1 Primary Assembly 11601 na scaffold_164_ctg1 unplaced-scaffold na na JAMYDX010000130.1 = NW_026060380.1 Primary Assembly 10549 na scaffold_165_ctg1 unplaced-scaffold na na JAMYDX010000131.1 = NW_026060381.1 Primary Assembly 10173 na scaffold_166_ctg1 unplaced-scaffold na na JAMYDX010000132.1 = NW_026060382.1 Primary Assembly 10081 na scaffold_167_ctg1 unplaced-scaffold na na JAMYDX010000133.1 = NW_026060383.1 Primary Assembly 9980 na scaffold_168_ctg1 unplaced-scaffold na na JAMYDX010000134.1 = NW_026060384.1 Primary Assembly 9839 na scaffold_169_ctg1 unplaced-scaffold na na JAMYDX010000135.1 = NW_026060385.1 Primary Assembly 9737 na scaffold_170_ctg1 unplaced-scaffold na na JAMYDX010000136.1 = NW_026060386.1 Primary Assembly 9222 na scaffold_172_ctg1 unplaced-scaffold na na JAMYDX010000137.1 = NW_026060387.1 Primary Assembly 9048 na scaffold_173_ctg1 unplaced-scaffold na na JAMYDX010000138.1 = NW_026060388.1 Primary Assembly 8863 na scaffold_174_ctg1 unplaced-scaffold na na JAMYDX010000139.1 = NW_026060389.1 Primary Assembly 8197 na scaffold_175_ctg1 unplaced-scaffold na na JAMYDX010000140.1 = NW_026060390.1 Primary Assembly 7942 na scaffold_176_ctg1 unplaced-scaffold na na JAMYDX010000141.1 = NW_026060391.1 Primary Assembly 6291 na scaffold_177_ctg1 unplaced-scaffold na na JAMYDX010000142.1 = NW_026060392.1 Primary Assembly 5885 na scaffold_178_ctg1 unplaced-scaffold na na JAMYDX010000143.1 = NW_026060393.1 Primary Assembly 5886 na scaffold_179_ctg1 unplaced-scaffold na na JAMYDX010000144.1 = NW_026060394.1 Primary Assembly 3860 na scaffold_180_ctg1 unplaced-scaffold na na JAMYDX010000145.1 = NW_026060395.1 Primary Assembly 3637 na scaffold_181_ctg1 unplaced-scaffold na na JAMYDX010000146.1 = NW_026060396.1 Primary Assembly 2888 na scaffold_182_ctg1 unplaced-scaffold na na JAMYDX010000147.1 = NW_026060397.1 Primary Assembly 2813 na scaffold_MT assembled-molecule MT Mitochondrion CM044019.1 <> na non-nuclear 16982 na