# Assembly name: CSIRO_AGI_Dcar_HiC_V3 # Organism name: Daphnia carinata (crustaceans) # Infraspecific name: strain=CSIRO-1 # Sex: female # Taxid: 120202 # BioSample: SAMN25047845 # BioProject: PRJNA798159 # Submitter: Australian Pest Genome Partnership # Date: 2023-08-08 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAKKWT03 # Assembly method: canu v. 2.2.0; flye v. 3.9; AllHiC v. 0.9.13 # Expected final version: yes # Genome coverage: 30.0x # Sequencing technology: Oxford Nanopore PromethION; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_022539665.4 # RefSeq assembly accession: GCF_022539665.2 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022539985.4 GCF_022539985.2 Primary Assembly ## GCF_027575775.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome1 assembled-molecule 1 Chromosome CM060641.1 = NC_081331.1 Primary Assembly 14382998 na Chromosome2 assembled-molecule 2 Chromosome CM060642.1 = NC_081332.1 Primary Assembly 7871635 na Chromosome3 assembled-molecule 3 Chromosome CM060643.1 = NC_081333.1 Primary Assembly 13273426 na Chromosome4 assembled-molecule 4 Chromosome CM060644.1 = NC_081334.1 Primary Assembly 9432699 na Chromosome5 assembled-molecule 5 Chromosome CM060645.1 = NC_081335.1 Primary Assembly 9753380 na Chromosome6 assembled-molecule 6 Chromosome CM060646.1 = NC_081336.1 Primary Assembly 10897450 na Chromosome7 assembled-molecule 7 Chromosome CM060647.1 = NC_081337.1 Primary Assembly 11596001 na Chromosome8 assembled-molecule 8 Chromosome CM060648.1 = NC_081338.1 Primary Assembly 8392112 na Chromosome9 assembled-molecule 9 Chromosome CM060649.1 = NC_081339.1 Primary Assembly 9910348 na Chromosome10 assembled-molecule 10 Chromosome CM060650.1 = NC_081340.1 Primary Assembly 8375650 na NW_026453019.1 unplaced-scaffold na na JAKKWT030000011.1 = NW_026712503.1 Primary Assembly 11993 na NW_026452972.1 unplaced-scaffold na na JAKKWT030000012.1 = NW_026712481.1 Primary Assembly 11529 na NW_026453135.1 unplaced-scaffold na na JAKKWT030000013.1 = NW_026712550.1 Primary Assembly 27681 na NW_026452999.1 unplaced-scaffold na na JAKKWT030000014.1 = NW_026712490.1 Primary Assembly 50181 na NW_026453007.1 unplaced-scaffold na na JAKKWT030000015.1 = NW_026712497.1 Primary Assembly 51613 na NW_026452979.1 unplaced-scaffold na na JAKKWT030000016.1 = NW_026712485.1 Primary Assembly 41388 na NW_026452978.1 unplaced-scaffold na na JAKKWT030000017.1 = NW_026712484.1 Primary Assembly 41177 na NW_026453132.1 unplaced-scaffold na na JAKKWT030000018.1 = NW_026712549.1 Primary Assembly 27255 na NW_026453156.1 unplaced-scaffold na na JAKKWT030000019.1 = NW_026712555.1 Primary Assembly 30392 na NW_026453045.1 unplaced-scaffold na na JAKKWT030000020.1 = NW_026712516.1 Primary Assembly 84565 na NW_026453122.1 unplaced-scaffold na na JAKKWT030000021.1 = NW_026712543.1 Primary Assembly 25628 na NW_026453131.1 unplaced-scaffold na na JAKKWT030000022.1 = NW_026712548.1 Primary Assembly 26349 na NW_026452989.1 unplaced-scaffold na na JAKKWT030000023.1 = NW_026712487.1 Primary Assembly 44903 na NW_026453021.1 unplaced-scaffold na na JAKKWT030000024.1 = NW_026712504.1 Primary Assembly 58916 na NW_026453040.1 unplaced-scaffold na na JAKKWT030000025.1 = NW_026712514.1 Primary Assembly 80161 na NW_026453093.1 unplaced-scaffold na na JAKKWT030000026.1 = NW_026712529.1 Primary Assembly 23118 na NW_026453013.1 unplaced-scaffold na na JAKKWT030000027.1 = NW_026712500.1 Primary Assembly 17712 na NW_026452952.1 unplaced-scaffold na na JAKKWT030000028.1 = NW_026712475.1 Primary Assembly 34814 na NW_026453037.1 unplaced-scaffold na na JAKKWT030000029.1 = NW_026712511.1 Primary Assembly 75779 na NW_026453129.1 unplaced-scaffold na na JAKKWT030000030.1 = NW_026712547.1 Primary Assembly 26372 na NW_026453039.1 unplaced-scaffold na na JAKKWT030000031.1 = NW_026712513.1 Primary Assembly 83739 na NW_026452997.1 unplaced-scaffold na na JAKKWT030000032.1 = NW_026712489.1 Primary Assembly 49932 na NW_026452980.1 unplaced-scaffold na na JAKKWT030000033.1 = NW_026712486.1 Primary Assembly 42385 na NW_026453063.1 unplaced-scaffold na na JAKKWT030000034.1 = NW_026712520.1 Primary Assembly 12832 na NW_026453100.1 unplaced-scaffold na na JAKKWT030000035.1 = NW_026712531.1 Primary Assembly 10418 na NW_026453094.1 unplaced-scaffold na na JAKKWT030000036.1 = NW_026712530.1 Primary Assembly 23153 na NW_026453111.1 unplaced-scaffold na na JAKKWT030000037.1 = NW_026712537.1 Primary Assembly 25282 na NW_026453012.1 unplaced-scaffold na na JAKKWT030000038.1 = NW_026712499.1 Primary Assembly 58259 na NW_026453027.1 unplaced-scaffold na na JAKKWT030000039.1 = NW_026712507.1 Primary Assembly 63617 na NW_026453023.1 unplaced-scaffold na na JAKKWT030000040.1 = NW_026712505.1 Primary Assembly 63056 na NW_026453160.1 unplaced-scaffold na na JAKKWT030000041.1 = NW_026712557.1 Primary Assembly 30806 na NW_026453116.1 unplaced-scaffold na na JAKKWT030000042.1 = NW_026712539.1 Primary Assembly 25616 na NW_026453018.1 unplaced-scaffold na na JAKKWT030000043.1 = NW_026712502.1 Primary Assembly 12266 na NW_026452935.1 unplaced-scaffold na na JAKKWT030000044.1 = NW_026712463.1 Primary Assembly 15478 na NW_026453092.1 unplaced-scaffold na na JAKKWT030000045.1 = NW_026712528.1 Primary Assembly 22742 na NW_026453085.1 unplaced-scaffold na na JAKKWT030000046.1 = NW_026712526.1 Primary Assembly 21394 na NW_026453125.1 unplaced-scaffold na na JAKKWT030000047.1 = NW_026712544.1 Primary Assembly 26136 na NW_026453114.1 unplaced-scaffold na na JAKKWT030000048.1 = NW_026712538.1 Primary Assembly 25432 na NW_026452975.1 unplaced-scaffold na na JAKKWT030000049.1 = NW_026712482.1 Primary Assembly 41029 na NW_026453104.1 unplaced-scaffold na na JAKKWT030000050.1 = NW_026712533.1 Primary Assembly 23298 na NW_026453108.1 unplaced-scaffold na na JAKKWT030000051.1 = NW_026712536.1 Primary Assembly 24077 na NW_026453025.1 unplaced-scaffold na na JAKKWT030000052.1 = NW_026712506.1 Primary Assembly 60068 na NW_026453067.1 unplaced-scaffold na na JAKKWT030000053.1 = NW_026712522.1 Primary Assembly 134907 na NW_026452941.1 unplaced-scaffold na na JAKKWT030000054.1 = NW_026712469.1 Primary Assembly 31821 na NW_026453107.1 unplaced-scaffold na na JAKKWT030000055.1 = NW_026712535.1 Primary Assembly 24222 na NW_026453005.1___fragment_4___debris unplaced-scaffold na na JAKKWT030000056.1 = NW_026712496.1 Primary Assembly 25000 na NW_026453005.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000057.1 = NW_026712495.1 Primary Assembly 25000 na NW_026453005.1___fragment_1 unplaced-scaffold na na JAKKWT030000058.1 = NW_026712494.1 Primary Assembly 52067 na NW_026453038.1 unplaced-scaffold na na JAKKWT030000059.1 = NW_026712512.1 Primary Assembly 74179 na NW_026453000.1 unplaced-scaffold na na JAKKWT030000060.1 = NW_026712491.1 Primary Assembly 48707 na NW_026453148.1 unplaced-scaffold na na JAKKWT030000061.1 = NW_026712553.1 Primary Assembly 107987 na NW_026453042.1 unplaced-scaffold na na JAKKWT030000062.1 = NW_026712515.1 Primary Assembly 80314 na NW_026452945.1 unplaced-scaffold na na JAKKWT030000063.1 = NW_026712472.1 Primary Assembly 32802 na NW_026453034.1 unplaced-scaffold na na JAKKWT030000064.1 = NW_026712510.1 Primary Assembly 76677 na NW_026452959.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000065.1 = NW_026712476.1 Primary Assembly 5000 na NW_026453031.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000066.1 = NW_026712508.1 Primary Assembly 50000 na NW_026453141.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000067.1 = NW_026712551.1 Primary Assembly 25000 na NW_026453105.1 unplaced-scaffold na na JAKKWT030000068.1 = NW_026712534.1 Primary Assembly 246134 na NW_026453017.1 unplaced-scaffold na na JAKKWT030000069.1 = NW_026712501.1 Primary Assembly 122828 na NW_026452950.1 unplaced-scaffold na na JAKKWT030000070.1 = NW_026712474.1 Primary Assembly 35051 na NW_026452937.1___fragment_4___debris unplaced-scaffold na na JAKKWT030000071.1 = NW_026712466.1 Primary Assembly 25000 na NW_026452937.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000072.1 = NW_026712465.1 Primary Assembly 25000 na NW_026452937.1___fragment_1 unplaced-scaffold na na JAKKWT030000073.1 = NW_026712464.1 Primary Assembly 249676 na NW_026452939.1 unplaced-scaffold na na JAKKWT030000074.1 = NW_026712468.1 Primary Assembly 31691 na NW_026453047.1 unplaced-scaffold na na JAKKWT030000075.1 = NW_026712517.1 Primary Assembly 17822 na NW_026453074.1 unplaced-scaffold na na JAKKWT030000076.1 = NW_026712525.1 Primary Assembly 14952 na NW_026453121.1 unplaced-scaffold na na JAKKWT030000077.1 = NW_026712542.1 Primary Assembly 25711 na NW_026452971.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000078.1 = NW_026712479.1 Primary Assembly 25000 na NW_026452971.1___fragment_3 unplaced-scaffold na na JAKKWT030000079.1 = NW_026712480.1 Primary Assembly 135882 na NW_026453119.1 unplaced-scaffold na na JAKKWT030000080.1 = NW_026712540.1 Primary Assembly 25619 na NW_026453151.1 unplaced-scaffold na na JAKKWT030000081.1 = NW_026712554.1 Primary Assembly 29448 na NW_026453053.1 unplaced-scaffold na na JAKKWT030000082.1 = NW_026712518.1 Primary Assembly 99702 na NW_026453159.1 unplaced-scaffold na na JAKKWT030000083.1 = NW_026712556.1 Primary Assembly 31550 na NW_026453120.1 unplaced-scaffold na na JAKKWT030000084.1 = NW_026712541.1 Primary Assembly 25971 na NW_026452976.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000085.1 = NW_026712483.1 Primary Assembly 5000 na NW_026453072.1___fragment_2___debris unplaced-scaffold na na JAKKWT030000086.1 = NW_026712524.1 Primary Assembly 50000 na NW_026453128.1 unplaced-scaffold na na JAKKWT030000087.1 = NW_026712546.1 Primary Assembly 16275 na NW_026453087.1 unplaced-scaffold na na JAKKWT030000088.1 = NW_026712527.1 Primary Assembly 20581 na NW_026453145.1 unplaced-scaffold na na JAKKWT030000089.1 = NW_026712552.1 Primary Assembly 11027 na NW_026453102.1 unplaced-scaffold na na JAKKWT030000090.1 = NW_026712532.1 Primary Assembly 23240 na NW_026452964.1 unplaced-scaffold na na JAKKWT030000091.1 = NW_026712477.1 Primary Assembly 39455 na NW_026452947.1 unplaced-scaffold na na JAKKWT030000092.1 = NW_026712473.1 Primary Assembly 32422 na NW_026453004.1 unplaced-scaffold na na JAKKWT030000093.1 = NW_026712493.1 Primary Assembly 16861 na NW_026452938.1 unplaced-scaffold na na JAKKWT030000094.1 = NW_026712467.1 Primary Assembly 16588 na NW_026453127.1 unplaced-scaffold na na JAKKWT030000095.1 = NW_026712545.1 Primary Assembly 26304 na NW_026452965.1 unplaced-scaffold na na JAKKWT030000096.1 = NW_026712478.1 Primary Assembly 38428 na NW_026453032.1 unplaced-scaffold na na JAKKWT030000097.1 = NW_026712509.1 Primary Assembly 65703 na NW_026453071.1 unplaced-scaffold na na JAKKWT030000098.1 = NW_026712523.1 Primary Assembly 14129 na NW_026452990.1 unplaced-scaffold na na JAKKWT030000099.1 = NW_026712488.1 Primary Assembly 45948 na NW_026452942.1 unplaced-scaffold na na JAKKWT030000100.1 = NW_026712470.1 Primary Assembly 32138 na NW_026452944.1 unplaced-scaffold na na JAKKWT030000101.1 = NW_026712471.1 Primary Assembly 32790 na NW_026453066.1 unplaced-scaffold na na JAKKWT030000102.1 = NW_026712521.1 Primary Assembly 132959 na NW_026453011.1 unplaced-scaffold na na JAKKWT030000103.1 = NW_026712498.1 Primary Assembly 55677 na NW_026453058.1 unplaced-scaffold na na JAKKWT030000104.1 = NW_026712519.1 Primary Assembly 19068 na NW_026453001.1 unplaced-scaffold na na JAKKWT030000105.1 = NW_026712492.1 Primary Assembly 51112 na MT assembled-molecule MT Mitochondrion na <> NC_028152.1 non-nuclear 15245 na