# Assembly name: Cobs3.1 # Organism name: Cardiocondyla obscurior (ants) # Isolate: alpha-2009 # Sex: pooled male and female # Taxid: 286306 # BioSample: SAMN16869678 # BioProject: PRJNA934066 # Submitter: University of Muenster # Date: 2024-06-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADYXP02 # Assembly method: Canu v. 1.9 # Expected final version: yes # Reference guided assembly: GCA_019399895.1 # Genome coverage: 30.0x # Sequencing technology: 454; PacBio; Oxford Nanopore MinION; Illumina # RefSeq category: Reference Genome # GenBank assembly accession: GCA_019399895.2 # RefSeq assembly accession: GCF_019399895.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_019399905.2 GCF_019399905.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name LG1 assembled-molecule LG01 Linkage Group CM079762.1 = NC_091864.1 Primary Assembly 13819712 na LG2 assembled-molecule LG02 Linkage Group CM079763.1 = NC_091865.1 Primary Assembly 13226410 na LG3 assembled-molecule LG03 Linkage Group CM079764.1 = NC_091866.1 Primary Assembly 11560214 na LG4 assembled-molecule LG04 Linkage Group CM079765.1 = NC_091867.1 Primary Assembly 11118701 na LG5 assembled-molecule LG05 Linkage Group CM079766.1 = NC_091868.1 Primary Assembly 9847336 na LG6 assembled-molecule LG06 Linkage Group CM079767.1 = NC_091869.1 Primary Assembly 9247653 na LG7 assembled-molecule LG07 Linkage Group CM079768.1 = NC_091870.1 Primary Assembly 9202281 na LG8 assembled-molecule LG08 Linkage Group CM079769.1 = NC_091871.1 Primary Assembly 7919025 na LG9 assembled-molecule LG09 Linkage Group CM079770.1 = NC_091872.1 Primary Assembly 7386649 na LG10 assembled-molecule LG10 Linkage Group CM079771.1 = NC_091873.1 Primary Assembly 7382929 na LG11 assembled-molecule LG11 Linkage Group CM079772.1 = NC_091874.1 Primary Assembly 7361187 na LG12 assembled-molecule LG12 Linkage Group CM079773.1 = NC_091875.1 Primary Assembly 6602575 na LG13 assembled-molecule LG13 Linkage Group CM079774.1 = NC_091876.1 Primary Assembly 5994744 na LG14 assembled-molecule LG14 Linkage Group CM079775.1 = NC_091877.1 Primary Assembly 5902896 na LG15 assembled-molecule LG15 Linkage Group CM079776.1 = NC_091878.1 Primary Assembly 5631722 na LG16 assembled-molecule LG16 Linkage Group CM079777.1 = NC_091879.1 Primary Assembly 5477151 na LG17 assembled-molecule LG17 Linkage Group CM079778.1 = NC_091880.1 Primary Assembly 5213470 na LG18 assembled-molecule LG18 Linkage Group CM079779.1 = NC_091881.1 Primary Assembly 5200860 na LG19 assembled-molecule LG19 Linkage Group CM079780.1 = NC_091882.1 Primary Assembly 5027330 na LG20 assembled-molecule LG20 Linkage Group CM079781.1 = NC_091883.1 Primary Assembly 4857363 na LG21 assembled-molecule LG21 Linkage Group CM079782.1 = NC_091884.1 Primary Assembly 4437275 na LG22 assembled-molecule LG22 Linkage Group CM079783.1 = NC_091885.1 Primary Assembly 4343458 na LG23 assembled-molecule LG23 Linkage Group CM079784.1 = NC_091886.1 Primary Assembly 3811114 na LG24 assembled-molecule LG24 Linkage Group CM079785.1 = NC_091887.1 Primary Assembly 3702185 na LG25 assembled-molecule LG25 Linkage Group CM079786.1 = NC_091888.1 Primary Assembly 3136423 na LG26 assembled-molecule LG26 Linkage Group CM079787.1 = NC_091889.1 Primary Assembly 2304265 na LG27 assembled-molecule LG27 Linkage Group CM079788.1 = NC_091890.1 Primary Assembly 1929107 na LG28 assembled-molecule LG28 Linkage Group CM079789.1 = NC_091891.1 Primary Assembly 1678838 na LG29 assembled-molecule LG29 Linkage Group CM079790.1 = NC_091892.1 Primary Assembly 1075729 na scaffold31_0_849067 unplaced-scaffold na na JADYXP020000030.1 = NW_027228788.1 Primary Assembly 849067 na scaffold38_0_513239 unplaced-scaffold na na JADYXP020000031.1 = NW_027228789.1 Primary Assembly 513239 na scaffold33_214576_698314 unplaced-scaffold na na JADYXP020000032.1 = NW_027228790.1 Primary Assembly 483698 na scaffold20_0_355366 unplaced-scaffold na na JADYXP020000033.1 = NW_027228791.1 Primary Assembly 355365 na scaffold41_0_353218 unplaced-scaffold na na JADYXP020000034.1 = NW_027228792.1 Primary Assembly 353218 na scaffold43_0_327834 unplaced-scaffold na na JADYXP020000035.1 = NW_027228793.1 Primary Assembly 327834 na scaffold1_7361187_7686053 unplaced-scaffold na na JADYXP020000036.1 = NW_027228794.1 Primary Assembly 302579 na scaffold45_0_294702 unplaced-scaffold na na JADYXP020000037.1 = NW_027228795.1 Primary Assembly 294702 na scaffold48_0_253740 unplaced-scaffold na na JADYXP020000038.1 = NW_027228796.1 Primary Assembly 253740 na scaffold50_0_238961 unplaced-scaffold na na JADYXP020000039.1 = NW_027228797.1 Primary Assembly 238961 na scaffold55_0_238251 unplaced-scaffold na na JADYXP020000040.1 = NW_027228798.1 Primary Assembly 238251 na scaffold52_0_228554 unplaced-scaffold na na JADYXP020000041.1 = NW_027228799.1 Primary Assembly 228554 na scaffold53_0_225703 unplaced-scaffold na na JADYXP020000042.1 = NW_027228800.1 Primary Assembly 225703 na scaffold54_0_224330 unplaced-scaffold na na JADYXP020000043.1 = NW_027228801.1 Primary Assembly 224330 na scaffold78_0_167090 unplaced-scaffold na na JADYXP020000044.1 = NW_027228802.1 Primary Assembly 167090 na scaffold57_0_143363 unplaced-scaffold na na JADYXP020000045.1 = NW_027228803.1 Primary Assembly 143363 na scaffold59_0_136335 unplaced-scaffold na na JADYXP020000046.1 = NW_027228804.1 Primary Assembly 136335 na scaffold61_0_135138 unplaced-scaffold na na JADYXP020000047.1 = NW_027228805.1 Primary Assembly 135138 na scaffold60_0_130978 unplaced-scaffold na na JADYXP020000048.1 = NW_027228806.1 Primary Assembly 130978 na scaffold69_0_121451 unplaced-scaffold na na JADYXP020000049.1 = NW_027228807.1 Primary Assembly 121451 na scaffold62_0_118913 unplaced-scaffold na na JADYXP020000050.1 = NW_027228808.1 Primary Assembly 118913 na scaffold63_0_115461 unplaced-scaffold na na JADYXP020000051.1 = NW_027228809.1 Primary Assembly 115461 na scaffold64_0_109653 unplaced-scaffold na na JADYXP020000052.1 = NW_027228810.1 Primary Assembly 109653 na scaffold66_0_105518 unplaced-scaffold na na JADYXP020000053.1 = NW_027228811.1 Primary Assembly 105518 na scaffold68_0_102269 unplaced-scaffold na na JADYXP020000054.1 = NW_027228812.1 Primary Assembly 102269 na scaffold72_0_91802 unplaced-scaffold na na JADYXP020000055.1 = NW_027228813.1 Primary Assembly 91802 na scaffold71_0_91097 unplaced-scaffold na na JADYXP020000056.1 = NW_027228814.1 Primary Assembly 91097 na scaffold73_0_88197 unplaced-scaffold na na JADYXP020000057.1 = NW_027228815.1 Primary Assembly 88197 na scaffold75_0_86964 unplaced-scaffold na na JADYXP020000058.1 = NW_027228816.1 Primary Assembly 86964 na scaffold74_0_86167 unplaced-scaffold na na JADYXP020000059.1 = NW_027228817.1 Primary Assembly 86167 na scaffold76_0_78318 unplaced-scaffold na na JADYXP020000060.1 = NW_027228818.1 Primary Assembly 78318 na scaffold77_0_77356 unplaced-scaffold na na JADYXP020000061.1 = NW_027228819.1 Primary Assembly 77356 na scaffold79_0_72279 unplaced-scaffold na na JADYXP020000062.1 = NW_027228820.1 Primary Assembly 72279 na scaffold81_0_71826 unplaced-scaffold na na JADYXP020000063.1 = NW_027228821.1 Primary Assembly 71826 na scaffold82_0_71809 unplaced-scaffold na na JADYXP020000064.1 = NW_027228822.1 Primary Assembly 71809 na scaffold84_0_68234 unplaced-scaffold na na JADYXP020000065.1 = NW_027228823.1 Primary Assembly 68234 na scaffold85_0_67754 unplaced-scaffold na na JADYXP020000066.1 = NW_027228824.1 Primary Assembly 67754 na scaffold86_0_66853 unplaced-scaffold na na JADYXP020000067.1 = NW_027228825.1 Primary Assembly 66853 na scaffold87_0_63427 unplaced-scaffold na na JADYXP020000068.1 = NW_027228826.1 Primary Assembly 63427 na scaffold89_0_60147 unplaced-scaffold na na JADYXP020000069.1 = NW_027228827.1 Primary Assembly 60147 na scaffold88_0_59476 unplaced-scaffold na na JADYXP020000070.1 = NW_027228828.1 Primary Assembly 59476 na scaffold90_0_57876 unplaced-scaffold na na JADYXP020000071.1 = NW_027228829.1 Primary Assembly 57876 na scaffold91_0_56547 unplaced-scaffold na na JADYXP020000072.1 = NW_027228830.1 Primary Assembly 56547 na scaffold92_0_54270 unplaced-scaffold na na JADYXP020000073.1 = NW_027228831.1 Primary Assembly 54270 na scaffold93_0_53609 unplaced-scaffold na na JADYXP020000074.1 = NW_027228832.1 Primary Assembly 53609 na scaffold94_0_51792 unplaced-scaffold na na JADYXP020000075.1 = NW_027228833.1 Primary Assembly 51792 na scaffold95_0_50158 unplaced-scaffold na na JADYXP020000076.1 = NW_027228834.1 Primary Assembly 50158 na scaffold96_0_48959 unplaced-scaffold na na JADYXP020000077.1 = NW_027228835.1 Primary Assembly 48959 na scaffold98_0_46403 unplaced-scaffold na na JADYXP020000078.1 = NW_027228836.1 Primary Assembly 46403 na scaffold99_0_44293 unplaced-scaffold na na JADYXP020000079.1 = NW_027228837.1 Primary Assembly 44293 na scaffold100_0_41245 unplaced-scaffold na na JADYXP020000080.1 = NW_027228838.1 Primary Assembly 41245 na scaffold101_0_38427 unplaced-scaffold na na JADYXP020000081.1 = NW_027228839.1 Primary Assembly 38427 na scaffold102_0_36485 unplaced-scaffold na na JADYXP020000082.1 = NW_027228840.1 Primary Assembly 36485 na scaffold103_0_35034 unplaced-scaffold na na JADYXP020000083.1 = NW_027228841.1 Primary Assembly 35034 na scaffold5_5392496_5426199 unplaced-scaffold na na JADYXP020000084.1 = NW_027228842.1 Primary Assembly 31377 na scaffold104_0_33048 unplaced-scaffold na na JADYXP020000085.1 = NW_027228843.1 Primary Assembly 33048 na scaffold105_0_32210 unplaced-scaffold na na JADYXP020000086.1 = NW_027228844.1 Primary Assembly 32210 na scaffold107_0_31281 unplaced-scaffold na na JADYXP020000087.1 = NW_027228845.1 Primary Assembly 31281 na scaffold108_0_31099 unplaced-scaffold na na JADYXP020000088.1 = NW_027228846.1 Primary Assembly 31099 na scaffold35_540112_568523 unplaced-scaffold na na JADYXP020000089.1 = NW_027228847.1 Primary Assembly 22052 na scaffold109_0_26544 unplaced-scaffold na na JADYXP020000090.1 = NW_027228848.1 Primary Assembly 26544 na scaffold110_0_25894 unplaced-scaffold na na JADYXP020000091.1 = NW_027228849.1 Primary Assembly 25894 na scaffold111_0_24996 unplaced-scaffold na na JADYXP020000092.1 = NW_027228850.1 Primary Assembly 24996 na scaffold112_0_24900 unplaced-scaffold na na JADYXP020000093.1 = NW_027228851.1 Primary Assembly 24900 na scaffold113_0_22417 unplaced-scaffold na na JADYXP020000094.1 = NW_027228852.1 Primary Assembly 22417 na scaffold114_0_21332 unplaced-scaffold na na JADYXP020000095.1 = NW_027228853.1 Primary Assembly 21332 na scaffold115_0_20609 unplaced-scaffold na na JADYXP020000096.1 = NW_027228854.1 Primary Assembly 20609 na scaffold116_0_19052 unplaced-scaffold na na JADYXP020000097.1 = NW_027228855.1 Primary Assembly 19052 na scaffold117_0_15753 unplaced-scaffold na na JADYXP020000098.1 = NW_027228856.1 Primary Assembly 15753 na scaffold118_0_15463 unplaced-scaffold na na JADYXP020000099.1 = NW_027228857.1 Primary Assembly 15463 na scaffold119_0_14821 unplaced-scaffold na na JADYXP020000100.1 = NW_027228858.1 Primary Assembly 14821 na scaffold120_0_14179 unplaced-scaffold na na JADYXP020000101.1 = NW_027228859.1 Primary Assembly 14179 na scaffold121_0_13862 unplaced-scaffold na na JADYXP020000102.1 = NW_027228860.1 Primary Assembly 13862 na scaffold122_0_13576 unplaced-scaffold na na JADYXP020000103.1 = NW_027228861.1 Primary Assembly 13576 na scaffold123_0_13170 unplaced-scaffold na na JADYXP020000104.1 = NW_027228862.1 Primary Assembly 13170 na scaffold124_0_12262 unplaced-scaffold na na JADYXP020000105.1 = NW_027228863.1 Primary Assembly 12262 na scaffold125_0_12050 unplaced-scaffold na na JADYXP020000106.1 = NW_027228864.1 Primary Assembly 12050 na scaffold126_0_11692 unplaced-scaffold na na JADYXP020000107.1 = NW_027228865.1 Primary Assembly 11692 na scaffold127_0_5657 unplaced-scaffold na na JADYXP020000108.1 = NW_027228866.1 Primary Assembly 5657 na scaffold128_0_5629 unplaced-scaffold na na JADYXP020000109.1 = NW_027228867.1 Primary Assembly 5629 na scaffold129_0_5450 unplaced-scaffold na na JADYXP020000110.1 = NW_027228868.1 Primary Assembly 5450 na scaffold130_0_5341 unplaced-scaffold na na JADYXP020000111.1 = NW_027228869.1 Primary Assembly 5341 na scaffold131_0_2158 unplaced-scaffold na na JADYXP020000112.1 = NW_027228870.1 Primary Assembly 2158 na scaffold132_0_1425 unplaced-scaffold na na JADYXP020000113.1 = NW_027228871.1 Primary Assembly 1425 na