# Assembly name: O.geoffroyi_Oge1_pat1.0 # Organism name: Leopardus geoffroyi (Geoffroy's cat) # Isolate: Oge1 # Sex: male # Taxid: 46844 # BioSample: SAMN19729386 # BioProject: PRJNA684599 # Submitter: Texas A&M University # Date: 2021-05-13 # Assembly type: alternate-pseudohaplotype # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAFEKB01 # Assembly method: NextDenovo v. 2.2-beta.0 # Expected final version: yes # Reference guided assembly: GCA_016509815.1 # Genome coverage: 85.0x # Sequencing technology: PacBio Sequel 2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_018350155.1 # RefSeq assembly accession: GCF_018350155.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCF_018350175.1 (principal pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_018350165.1 GCF_018350165.1 Primary Assembly ## GCF_021095085.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chrA1 assembled-molecule A1 Chromosome CM031394.1 = NC_059326.1 Primary Assembly 239694388 na chrB1 assembled-molecule B1 Chromosome CM031397.1 = NC_059327.1 Primary Assembly 205836458 na chrC1 assembled-molecule C1 Chromosome CM031401.1 = NC_059328.1 Primary Assembly 222052948 na chrD1 assembled-molecule D1 Chromosome CM031404.1 = NC_059329.1 Primary Assembly 115783437 na chrE1 assembled-molecule E1 Chromosome CM031408.1 = NC_059330.1 Primary Assembly 61591894 na chrA2 assembled-molecule A2 Chromosome CM031395.1 = NC_059331.1 Primary Assembly 169709481 na chrB2 assembled-molecule B2 Chromosome CM031398.1 = NC_059332.1 Primary Assembly 152606360 na chrC2 assembled-molecule C2 Chromosome CM031402.1 = NC_059333.1 Primary Assembly 158996348 na chrD2 assembled-molecule D2 Chromosome CM031405.1 = NC_059334.1 Primary Assembly 88472993 na chrE2 assembled-molecule E2 Chromosome CM031409.1 = NC_059335.1 Primary Assembly 62031975 na chrA3 assembled-molecule A3 Chromosome CM031396.1 = NC_059336.1 Primary Assembly 140630183 na chrB3 assembled-molecule B3 Chromosome CM031399.1 = NC_059337.1 Primary Assembly 148130213 na chrC3 assembled-molecule C3 Chromosome CM031403.1 = NC_059338.1 Primary Assembly 153706148 na chrD3 assembled-molecule D3 Chromosome CM031406.1 = NC_059339.1 Primary Assembly 94884351 na chrE3 assembled-molecule E3 Chromosome CM031410.1 = NC_059340.1 Primary Assembly 42047855 na chrB4 assembled-molecule B4 Chromosome CM031400.1 = NC_059341.1 Primary Assembly 142838203 na chrD4 assembled-molecule D4 Chromosome CM031407.1 = NC_059342.1 Primary Assembly 94461142 na chrX assembled-molecule X Chromosome CM031393.1 = NC_059343.1 Primary Assembly 128930408 na chrD1_random_Un_scaffold_69 unlocalized-scaffold D1 Chromosome JAFEKB010000075.1 = NW_025543551.1 Primary Assembly 72565 na chrA2_random_Un_scaffold_71 unlocalized-scaffold A2 Chromosome JAFEKB010000077.1 = NW_025543552.1 Primary Assembly 58110 na chrB2_random_Un_scaffold_59 unlocalized-scaffold B2 Chromosome JAFEKB010000065.1 = NW_025543553.1 Primary Assembly 117511 na chrC2_random_Un_scaffold_44 unlocalized-scaffold C2 Chromosome JAFEKB010000050.1 = NW_025543554.1 Primary Assembly 298734 na chrD2_random_Un_scaffold_58 unlocalized-scaffold D2 Chromosome JAFEKB010000064.1 = NW_025543555.1 Primary Assembly 146327 na chrC3_random_Un_scaffold_41 unlocalized-scaffold C3 Chromosome JAFEKB010000047.1 = NW_025543556.1 Primary Assembly 317969 na chrD3_random_Un_scaffold_40 unlocalized-scaffold D3 Chromosome JAFEKB010000046.1 = NW_025543557.1 Primary Assembly 375427 na chrD3_random_Un_scaffold_43 unlocalized-scaffold D3 Chromosome JAFEKB010000049.1 = NW_025543558.1 Primary Assembly 305094 na chrD3_random_Un_scaffold_47 unlocalized-scaffold D3 Chromosome JAFEKB010000053.1 = NW_025543559.1 Primary Assembly 204169 na chrD3_random_Un_scaffold_48 unlocalized-scaffold D3 Chromosome JAFEKB010000054.1 = NW_025543560.1 Primary Assembly 180892 na chrD3_random_Un_scaffold_49 unlocalized-scaffold D3 Chromosome JAFEKB010000055.1 = NW_025543561.1 Primary Assembly 178842 na chrD3_random_Un_scaffold_53 unlocalized-scaffold D3 Chromosome JAFEKB010000059.1 = NW_025543562.1 Primary Assembly 155117 na chrD3_random_Un_scaffold_54 unlocalized-scaffold D3 Chromosome JAFEKB010000060.1 = NW_025543563.1 Primary Assembly 153653 na chrD3_random_Un_scaffold_61 unlocalized-scaffold D3 Chromosome JAFEKB010000067.1 = NW_025543564.1 Primary Assembly 107342 na chrD3_random_Un_scaffold_62 unlocalized-scaffold D3 Chromosome JAFEKB010000068.1 = NW_025543565.1 Primary Assembly 88200 na chrD3_random_Un_scaffold_63 unlocalized-scaffold D3 Chromosome JAFEKB010000069.1 = NW_025543566.1 Primary Assembly 85892 na chrD3_random_Un_scaffold_64 unlocalized-scaffold D3 Chromosome JAFEKB010000070.1 = NW_025543567.1 Primary Assembly 85885 na chrD3_random_Un_scaffold_66 unlocalized-scaffold D3 Chromosome JAFEKB010000072.1 = NW_025543568.1 Primary Assembly 81868 na chrD3_random_Un_scaffold_74 unlocalized-scaffold D3 Chromosome JAFEKB010000080.1 = NW_025543569.1 Primary Assembly 45486 na chrE3_random_Un_scaffold_51 unlocalized-scaffold E3 Chromosome JAFEKB010000057.1 = NW_025543570.1 Primary Assembly 173790 na chrX_random_Un_scaffold_50 unlocalized-scaffold X Chromosome JAFEKB010000056.1 = NW_025543571.1 Primary Assembly 178397 na chrX_random_Un_scaffold_55 unlocalized-scaffold X Chromosome JAFEKB010000061.1 = NW_025543572.1 Primary Assembly 153328 na chrX_random_Un_scaffold_60 unlocalized-scaffold X Chromosome JAFEKB010000066.1 = NW_025543573.1 Primary Assembly 112120 na chrX_random_Un_scaffold_67 unlocalized-scaffold X Chromosome JAFEKB010000073.1 = NW_025543574.1 Primary Assembly 78246 na chrX_random_Un_scaffold_68 unlocalized-scaffold X Chromosome JAFEKB010000074.1 = NW_025543575.1 Primary Assembly 75132 na chrX_random_Un_scaffold_72 unlocalized-scaffold X Chromosome JAFEKB010000078.1 = NW_025543576.1 Primary Assembly 56726 na chrX_random_Un_scaffold_73 unlocalized-scaffold X Chromosome JAFEKB010000079.1 = NW_025543577.1 Primary Assembly 50499 na Un_scaffold_75 unplaced-scaffold na na JAFEKB010000081.1 = NW_025543578.1 Primary Assembly 28710 na MT assembled-molecule MT Mitochondrion na <> NC_028320.1 non-nuclear 16738 na