# Assembly name: MEX_DaPlex # Organism name: Danaus plexippus (monarch butterfly) # Sex: female # Taxid: 13037 # BioSample: SAMN16239029 # BioProject: PRJNA663267 # Submitter: Langebio / CINVESTAV # Date: 2021-04-26 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAEQBL01 # Assembly method: Canu v. 1.6; Platanus v. 1.2.1; HalploMerger2 v. 20180603; Quickmerge v. 0.3; DBG2OLC v. a2034d768efda85062de8a6d6f84a8a463e65bbe # Expected final version: yes # Genome coverage: 448.0x # Sequencing technology: PacBio Sequel; Illumina HiSeq 4000 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_018135715.1 # RefSeq assembly accession: GCF_018135715.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_018135725.1 GCF_018135725.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name mxdp_4 assembled-molecule 2 Chromosome CM030908.1 = NC_083537.1 Primary Assembly 10098950 na mxdp_9 assembled-molecule 4 Chromosome CM030909.1 = NC_083538.1 Primary Assembly 9131010 na mxdp_10 assembled-molecule 5 Chromosome CM030910.1 = NC_083539.1 Primary Assembly 9019870 na mxdp_2 assembled-molecule 6 Chromosome CM030911.1 = NC_083540.1 Primary Assembly 10309481 na mxdp_14 assembled-molecule 7 Chromosome CM030912.1 = NC_083541.1 Primary Assembly 8067864 na mxdp_3 assembled-molecule 8 Chromosome CM030913.1 = NC_083542.1 Primary Assembly 10301214 na mxdp_8 assembled-molecule 10 Chromosome CM030914.1 = NC_083543.1 Primary Assembly 9427843 na mxdp_7 assembled-molecule 11 Chromosome CM030915.1 = NC_083544.1 Primary Assembly 9638922 na mxdp_13 assembled-molecule 12 Chromosome CM030916.1 = NC_083545.1 Primary Assembly 8158176 na mxdp_12 assembled-molecule 14 Chromosome CM030917.1 = NC_083546.1 Primary Assembly 8429815 na mxdp_6 assembled-molecule 15 Chromosome CM030918.1 = NC_083547.1 Primary Assembly 9645913 na mxdp_5 assembled-molecule 17 Chromosome CM030919.1 = NC_083548.1 Primary Assembly 9976722 na mxdp_11 assembled-molecule 19 Chromosome CM030920.1 = NC_083549.1 Primary Assembly 8977435 na mxdp_16 assembled-molecule 20 Chromosome CM030921.1 = NC_083550.1 Primary Assembly 6958931 na mxdp_18 assembled-molecule 23 Chromosome CM030922.1 = NC_083551.1 Primary Assembly 6260409 na mxdp_22 assembled-molecule 24 Chromosome CM030923.1 = NC_083552.1 Primary Assembly 5062886 na mxdp_19 assembled-molecule 25 Chromosome CM030924.1 = NC_083553.1 Primary Assembly 6018111 na mxdp_17 assembled-molecule 26 Chromosome CM030925.1 = NC_083554.1 Primary Assembly 6627312 na mxdp_21 assembled-molecule 27 Chromosome CM030926.1 = NC_083555.1 Primary Assembly 5088227 na mxdp_28 assembled-molecule 28 Chromosome CM030927.1 = NC_083556.1 Primary Assembly 3665469 na mxdp_29 assembled-molecule 30 Chromosome CM030928.1 = NC_083557.1 Primary Assembly 3498347 na mxdp_32 assembled-molecule 31 Chromosome CM030929.1 = NC_083558.1 Primary Assembly 2838588 na mxdp_1 assembled-molecule Z Chromosome CM030930.1 = NC_083559.1 Primary Assembly 16343425 na mxdp_34 unlocalized-scaffold 3 Chromosome JAEQBL010000025.1 = NW_026869846.1 Primary Assembly 2629375 na mxdp_25 unlocalized-scaffold 3 Chromosome JAEQBL010000028.1 = NW_026869844.1 Primary Assembly 4527854 na mxdp_30 unlocalized-scaffold 3 Chromosome JAEQBL010000037.1 = NW_026869845.1 Primary Assembly 3346667 na mxdp_24 unlocalized-scaffold 9 Chromosome JAEQBL010000003.1 = NW_026869847.1 Primary Assembly 4968230 na mxdp_26 unlocalized-scaffold 9 Chromosome JAEQBL010000004.1 = NW_026869848.1 Primary Assembly 4409443 na mxdp_15 unlocalized-scaffold 13 Chromosome JAEQBL010000005.1 = NW_026869849.1 Primary Assembly 7664426 na mxdp_40 unlocalized-scaffold 13 Chromosome JAEQBL010000039.1 = NW_026869850.1 Primary Assembly 843341 na mxdp_31 unlocalized-scaffold 16 Chromosome JAEQBL010000026.1 = NW_026869852.1 Primary Assembly 3269702 na mxdp_23 unlocalized-scaffold 16 Chromosome JAEQBL010000035.1 = NW_026869851.1 Primary Assembly 4997668 na mxdp_35 unlocalized-scaffold 18 Chromosome JAEQBL010000001.1 = NW_026869854.1 Primary Assembly 2321143 na mxdp_20 unlocalized-scaffold 18 Chromosome JAEQBL010000002.1 = NW_026869853.1 Primary Assembly 5442852 na mxdp_27 unlocalized-scaffold 22 Chromosome JAEQBL010000021.1 = NW_026869855.1 Primary Assembly 3866676 na mxdp_33 unlocalized-scaffold 22 Chromosome JAEQBL010000023.1 = NW_026869856.1 Primary Assembly 2769542 na mxdp_36 unlocalized-scaffold 29 Chromosome JAEQBL010000032.1 = NW_026869857.1 Primary Assembly 2012871 na mxdp_37 unlocalized-scaffold 29 Chromosome JAEQBL010000033.1 = NW_026869858.1 Primary Assembly 1759534 na mxdp_39 unplaced-scaffold na na JAEQBL010000038.1 = NW_026869860.1 Primary Assembly 1138098 na mxdp_41 unplaced-scaffold na na JAEQBL010000040.1 = NW_026869861.1 Primary Assembly 588437 na mxdp_42 unplaced-scaffold na na JAEQBL010000041.1 = NW_026869862.1 Primary Assembly 584512 na mxdp_43 unplaced-scaffold na na JAEQBL010000042.1 = NW_026869863.1 Primary Assembly 523262 na mxdp_44 unplaced-scaffold na na JAEQBL010000043.1 = NW_026869864.1 Primary Assembly 312611 na mxdp_52 unplaced-scaffold na na JAEQBL010000044.1 = NW_026869872.1 Primary Assembly 143125 na mxdp_38 unplaced-scaffold na na JAEQBL010000045.1 = NW_026869859.1 Primary Assembly 1293630 na mxdp_45 unplaced-scaffold na na JAEQBL010000046.1 = NW_026869865.1 Primary Assembly 233038 na mxdp_46 unplaced-scaffold na na JAEQBL010000047.1 = NW_026869866.1 Primary Assembly 232267 na mxdp_48 unplaced-scaffold na na JAEQBL010000048.1 = NW_026869868.1 Primary Assembly 199599 na mxdp_50 unplaced-scaffold na na JAEQBL010000049.1 = NW_026869870.1 Primary Assembly 148502 na mxdp_51 unplaced-scaffold na na JAEQBL010000050.1 = NW_026869871.1 Primary Assembly 144262 na mxdp_53 unplaced-scaffold na na JAEQBL010000051.1 = NW_026869873.1 Primary Assembly 131400 na mxdp_55 unplaced-scaffold na na JAEQBL010000052.1 = NW_026869875.1 Primary Assembly 124315 na mxdp_56 unplaced-scaffold na na JAEQBL010000053.1 = NW_026869876.1 Primary Assembly 117325 na mxdp_57 unplaced-scaffold na na JAEQBL010000054.1 = NW_026869877.1 Primary Assembly 93888 na mxdp_58 unplaced-scaffold na na JAEQBL010000055.1 = NW_026869878.1 Primary Assembly 91194 na mxdp_60 unplaced-scaffold na na JAEQBL010000056.1 = NW_026869880.1 Primary Assembly 42057 na mxdp_61 unplaced-scaffold na na JAEQBL010000057.1 = NW_026869881.1 Primary Assembly 35966 na mxdp_62 unplaced-scaffold na na JAEQBL010000058.1 = NW_026869882.1 Primary Assembly 10964 na mxdp_63 unplaced-scaffold na na JAEQBL010000059.1 = NW_026869883.1 Primary Assembly 6297 na mxdp_64 unplaced-scaffold na na JAEQBL010000060.1 = NW_026869884.1 Primary Assembly 3601 na mxdp_66 unplaced-scaffold na na JAEQBL010000061.1 = NW_026869886.1 Primary Assembly 3129 na mxdp_47 unplaced-scaffold na na JAEQBL010000062.1 = NW_026869867.1 Primary Assembly 213662 na mxdp_49 unplaced-scaffold na na JAEQBL010000063.1 = NW_026869869.1 Primary Assembly 176328 na mxdp_54 unplaced-scaffold na na JAEQBL010000064.1 = NW_026869874.1 Primary Assembly 130797 na mxdp_59 unplaced-scaffold na na JAEQBL010000065.1 = NW_026869879.1 Primary Assembly 73475 na mxdp_65 unplaced-scaffold na na JAEQBL010000066.1 = NW_026869885.1 Primary Assembly 3517 na