# Assembly name: Prin_Dsan_1.1 # Organism name: Drosophila santomea (flies) # Infraspecific name: strain=STO CAGO 1482 # Sex: female # Taxid: 129105 # BioSample: SAMN15573959 # BioProject: PRJNA647033 # Submitter: Princeton University # Date: 2021-07-30 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAECZZ02 # Assembly method: FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d # Expected final version: yes # Reference guided assembly: Drosophila melanogaster FlyBase release 6.26 # Genome coverage: 103.0x # Sequencing technology: PacBio RSII; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016746245.2 # RefSeq assembly accession: GCF_016746245.2 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016746285.2 GCF_016746285.2 Primary Assembly ## GCA_016746315.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 2L assembled-molecule 2L Chromosome CM028588.2 = NC_053016.2 Primary Assembly 27915280 na 2R assembled-molecule 2R Chromosome CM028589.2 = NC_053017.2 Primary Assembly 22646313 na 3L assembled-molecule 3L Chromosome CM028590.2 = NC_053018.2 Primary Assembly 25621868 na 3R assembled-molecule 3R Chromosome CM028591.2 = NC_053019.2 Primary Assembly 29038104 na 4 assembled-molecule 4 Chromosome CM028586.2 = NC_053020.2 Primary Assembly 1429326 na X assembled-molecule X Chromosome CM028587.2 = NC_053021.2 Primary Assembly 22631256 na Segkk63_quiver_pilon_ctg1_scaf unplaced-scaffold na na JAECZZ020000007.1 = NW_025318995.1 Primary Assembly 790015 na Segkk97_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ020000008.1 = NW_025319028.1 Primary Assembly 71015 na Segkk57_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000009.1 = NW_025318988.1 Primary Assembly 46035 na Segkk81_quiver_pilon_misjoin2_scaf unplaced-scaffold na na JAECZZ020000010.1 = NW_025319018.1 Primary Assembly 10001 na Segkk107_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000011.1 = NW_025318938.1 Primary Assembly 82190 na Segkk28_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000012.1 = NW_025318960.1 Primary Assembly 63556 na Segkk81_quiver_pilon_ctg2_scaf unplaced-scaffold na na JAECZZ020000013.1 = NW_025319016.1 Primary Assembly 246009 na Segkk37_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000014.1 = NW_025318970.1 Primary Assembly 49402 na Segkk69_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000015.1 = NW_025319001.1 Primary Assembly 1663439 na Segkk54_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000016.1 = NW_025318985.1 Primary Assembly 30582 na Segkk86_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000017.1 = NW_025319022.1 Primary Assembly 407963 na Segkk9_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000018.1 = NW_025319030.1 Primary Assembly 509314 na Segkk26_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000019.1 = NW_025318958.1 Primary Assembly 69697 na Segkk81_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ020000020.1 = NW_025319017.1 Primary Assembly 22003 na Segkk72_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000021.1 = NW_025319005.1 Primary Assembly 10743 na Segkk88_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000022.1 = NW_025319023.1 Primary Assembly 98797 na Segkk68_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000023.1 = NW_025319000.1 Primary Assembly 13653 na Segkk16_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000024.1 = NW_025318948.1 Primary Assembly 174142 na Segkk83_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000025.1 = NW_025319019.1 Primary Assembly 1400491 na Segkk8_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000026.1 = NW_025319025.1 Primary Assembly 34531 na Segkk45_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000027.1 = NW_025318977.1 Primary Assembly 39543 na Segkk63_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ020000028.1 = NW_025318996.1 Primary Assembly 31003 na Segkk25_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000029.1 = NW_025318957.1 Primary Assembly 71805 na Segkk79_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ020000030.1 = NW_025319012.1 Primary Assembly 815445 na Segkk32_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000031.1 = NW_025318965.1 Primary Assembly 58119 na Segkk111_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000032.1 = NW_025318943.1 Primary Assembly 87918 na Segkk21_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000033.1 = NW_025318953.1 Primary Assembly 209173 na Segkk30_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000034.1 = NW_025318963.1 Primary Assembly 61996 na Segkk75_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000035.1 = NW_025319008.1 Primary Assembly 7392 na Segkk42_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000036.1 = NW_025318974.1 Primary Assembly 140179 na Segkk94_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ020000037.1 = NW_025319027.1 Primary Assembly 20005 na Segkk6_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000038.1 = NW_025319002.1 Primary Assembly 718906 na Segkk59_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000039.1 = NW_025318990.1 Primary Assembly 24458 na Segkk89_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000040.1 = NW_025319024.1 Primary Assembly 104264 na Segkk34_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000041.1 = NW_025318967.1 Primary Assembly 27995 na Segkk5_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000042.1 = NW_025318991.1 Primary Assembly 805159 na Segkk10_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000043.1 = NW_025318941.1 Primary Assembly 447160 na Segkk102_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000044.1 = NW_025318934.1 Primary Assembly 97358 na Segkk78_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000045.1 = NW_025319011.1 Primary Assembly 48676 na Segkk62_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000046.1 = NW_025318994.1 Primary Assembly 22641 na Segkk70_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000047.1 = NW_025319003.1 Primary Assembly 16055 na Segkk52_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000048.1 = NW_025318983.1 Primary Assembly 31083 na Segkk49_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000049.1 = NW_025318980.1 Primary Assembly 31944 na Segkk17_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000050.1 = NW_025318949.1 Primary Assembly 183471 na Segkk31_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000051.1 = NW_025318964.1 Primary Assembly 61249 na Segkk44_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000052.1 = NW_025318976.1 Primary Assembly 39793 na Segkk35_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000053.1 = NW_025318968.1 Primary Assembly 51104 na Segkk74_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000054.1 = NW_025319007.1 Primary Assembly 6475 na Segkk33_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000055.1 = NW_025318966.1 Primary Assembly 107252 na Segkk48_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000056.1 = NW_025318979.1 Primary Assembly 16757 na Segkk84_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000057.1 = NW_025319020.1 Primary Assembly 56743 na Segkk61_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000058.1 = NW_025318993.1 Primary Assembly 82881 na Segkk67_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000059.1 = NW_025318999.1 Primary Assembly 76551 na Segkk85_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000060.1 = NW_025319021.1 Primary Assembly 1359427 na Segkk71_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000061.1 = NW_025319004.1 Primary Assembly 14943 na Segkk29_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000062.1 = NW_025318961.1 Primary Assembly 61625 na Segkk60_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000063.1 = NW_025318992.1 Primary Assembly 21988 na Segkk77_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000064.1 = NW_025319010.1 Primary Assembly 17908 na Segkk15_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000065.1 = NW_025318947.1 Primary Assembly 169655 na Segkk109_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000066.1 = NW_025318940.1 Primary Assembly 185952 na Segkk80_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ020000067.1 = NW_025319014.1 Primary Assembly 14012 na Segkk40_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000068.1 = NW_025318972.1 Primary Assembly 47148 na Segkk73_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000069.1 = NW_025319006.1 Primary Assembly 10243 na Segkk98_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000070.1 = NW_025319029.1 Primary Assembly 91674 na Segkk36_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000071.1 = NW_025318969.1 Primary Assembly 50702 na Segkk64_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000072.1 = NW_025318997.1 Primary Assembly 20706 na Segkk106_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000073.1 = NW_025318937.1 Primary Assembly 61725 na Segkk53_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000074.1 = NW_025318984.1 Primary Assembly 31013 na Segkk18_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000075.1 = NW_025318950.1 Primary Assembly 146371 na Segkk19_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000076.1 = NW_025318951.1 Primary Assembly 131060 na Segkk23_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000077.1 = NW_025318955.1 Primary Assembly 93142 na Segkk38_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000078.1 = NW_025318971.1 Primary Assembly 48539 na Segkk104_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000079.1 = NW_025318935.1 Primary Assembly 145562 na Segkk55_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000080.1 = NW_025318986.1 Primary Assembly 27934 na Segkk11_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000081.1 = NW_025318944.1 Primary Assembly 395661 na Segkk43_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000082.1 = NW_025318975.1 Primary Assembly 27774 na Segkk13_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000083.1 = NW_025318946.1 Primary Assembly 342525 na Segkk80_quiver_pilon_misjoin2_scaf unplaced-scaffold na na JAECZZ020000084.1 = NW_025319015.1 Primary Assembly 16003 na Segkk24_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000085.1 = NW_025318956.1 Primary Assembly 72047 na Segkk65_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000086.1 = NW_025318998.1 Primary Assembly 30063 na Segkk50_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000087.1 = NW_025318981.1 Primary Assembly 30320 na Segkk7_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000088.1 = NW_025319013.1 Primary Assembly 620847 na Segkk108_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000089.1 = NW_025318939.1 Primary Assembly 37109 na Segkk20_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000090.1 = NW_025318952.1 Primary Assembly 115993 na Segkk76_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000091.1 = NW_025319009.1 Primary Assembly 16849 na Segkk56_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000092.1 = NW_025318987.1 Primary Assembly 28061 na Segkk51_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000093.1 = NW_025318982.1 Primary Assembly 31164 na Segkk101_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000094.1 = NW_025318933.1 Primary Assembly 1641520 na Segkk2_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000095.1 = NW_025318962.1 Primary Assembly 36781 na Segkk105_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000097.1 = NW_025318936.1 Primary Assembly 44216 na Segkk46_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000098.1 = NW_025318978.1 Primary Assembly 103334 na Segkk12_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000099.1 = NW_025318945.1 Primary Assembly 364863 na Segkk110_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000100.1 = NW_025318942.1 Primary Assembly 46518 na Segkk27_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000101.1 = NW_025318959.1 Primary Assembly 67452 na Segkk22_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000102.1 = NW_025318954.1 Primary Assembly 153022 na Segkk91_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000103.1 = NW_025319026.1 Primary Assembly 80407 na Segkk58_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000104.1 = NW_025318989.1 Primary Assembly 25576 na Segkk41_quiver_pilon_scaf unplaced-scaffold na na JAECZZ020000105.1 = NW_025318973.1 Primary Assembly 44810 na Dsan_STOCAGO1482_mtDNA assembled-molecule MT Mitochondrion CM028611.2 <> na non-nuclear 16011 na