# Assembly name: UJ_Ityp_2.0 # Organism name: Ips typographus (beetles) # Isolate: SLU # Sex: pooled male and female # Taxid: 55986 # BioSample: SAMN16538706 # BioProject: PRJNA671615 # Submitter: Czech University of Life Sciences # Date: 2026-01-16 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADDUH02 # Assembly method: LepMap3 v. June-2025; Lep-Anchor v. June-2025 # Expected final version: Yes # Reference guided assembly: CZU_Ityp_1.0 # Genome coverage: 211.0x # Sequencing technology: Illumina NovaSeq; Oxford Nanopore; PacBio # RefSeq category: Reference Genome # GenBank assembly accession: GCA_016097725.2 # RefSeq assembly accession: GCF_016097725.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016097745.2 GCF_016097745.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name LG1 assembled-molecule LG1 Linkage Group CM137208.1 = NC_138422.1 Primary Assembly 31121059 na LG2 assembled-molecule LG2 Linkage Group CM137209.1 = NC_138423.1 Primary Assembly 26547836 na LG3 assembled-molecule LG3 Linkage Group CM137210.1 = NC_138424.1 Primary Assembly 22521065 na LG4 assembled-molecule LG4 Linkage Group CM137211.1 = NC_138425.1 Primary Assembly 14410712 na LG5 assembled-molecule LG5 Linkage Group CM137212.1 = NC_138426.1 Primary Assembly 14452831 na LG6 assembled-molecule LG6 Linkage Group CM137213.1 = NC_138427.1 Primary Assembly 12144430 na LG7 assembled-molecule LG7 Linkage Group CM137214.1 = NC_138428.1 Primary Assembly 9585165 na LG8 assembled-molecule LG8 Linkage Group CM137215.1 = NC_138429.1 Primary Assembly 8697214 na LG9 assembled-molecule LG9 Linkage Group CM137216.1 = NC_138430.1 Primary Assembly 9863139 na LG10 assembled-molecule LG10 Linkage Group CM137217.1 = NC_138431.1 Primary Assembly 8074229 na LG11 assembled-molecule LG11 Linkage Group CM137218.1 = NC_138432.1 Primary Assembly 11013495 na LG12 assembled-molecule LG12 Linkage Group CM137219.1 = NC_138433.1 Primary Assembly 10596154 na LG13 assembled-molecule LG13 Linkage Group CM137220.1 = NC_138434.1 Primary Assembly 7770798 na LG14 assembled-molecule LG14 Linkage Group CM137221.1 = NC_138435.1 Primary Assembly 7078474 na LG15 assembled-molecule LG15 Linkage Group CM137222.1 = NC_138436.1 Primary Assembly 9526174 na LG16 assembled-molecule LG16 Linkage Group CM137223.1 = NC_138437.1 Primary Assembly 9645974 na IpsContig33 unplaced-scaffold na na JADDUH020000017.1 = NW_028098572.1 Primary Assembly 1134613 na IpsContig31 unplaced-scaffold na na JADDUH020000018.1 = NW_028098571.1 Primary Assembly 196690 na IpsContig107 unplaced-scaffold na na JADDUH020000019.1 = NW_028098533.1 Primary Assembly 231420 na IpsContig121 unplaced-scaffold na na JADDUH020000020.1 = NW_028098541.1 Primary Assembly 187368 na IpsContig109 unplaced-scaffold na na JADDUH020000021.1 = NW_028098534.1 Primary Assembly 229046 na IpsContig124 unplaced-scaffold na na JADDUH020000022.1 = NW_028098542.1 Primary Assembly 175849 na IpsContig144 unplaced-scaffold na na JADDUH020000023.1 = NW_028098545.1 Primary Assembly 129860 na IpsContig162 unplaced-scaffold na na JADDUH020000024.1 = NW_028098547.1 Primary Assembly 101736 na IpsContig44 unplaced-scaffold na na JADDUH020000025.1 = NW_028098575.1 Primary Assembly 859754 na IpsContig167 unplaced-scaffold na na JADDUH020000026.1 = NW_028098548.1 Primary Assembly 92960 na IpsContig200 unplaced-scaffold na na JADDUH020000027.1 = NW_028098554.1 Primary Assembly 44865 na IpsContig201 unplaced-scaffold na na JADDUH020000028.1 = NW_028098555.1 Primary Assembly 44608 na IpsContig202 unplaced-scaffold na na JADDUH020000029.1 = NW_028098556.1 Primary Assembly 44541 na IpsContig186 unplaced-scaffold na na JADDUH020000030.1 = NW_028098552.1 Primary Assembly 56911 na IpsContig220 unplaced-scaffold na na JADDUH020000031.1 = NW_028098559.1 Primary Assembly 37334 na IpsContig188 unplaced-scaffold na na JADDUH020000032.1 = NW_028098553.1 Primary Assembly 54616 na IpsContig224 unplaced-scaffold na na JADDUH020000033.1 = NW_028098560.1 Primary Assembly 36153 na IpsContig82 unplaced-scaffold na na JADDUH020000034.1 = NW_028098581.1 Primary Assembly 358550 na IpsContig227 unplaced-scaffold na na JADDUH020000035.1 = NW_028098561.1 Primary Assembly 35073 na IpsContig240 unplaced-scaffold na na JADDUH020000036.1 = NW_028098563.1 Primary Assembly 30273 na IpsContig241 unplaced-scaffold na na JADDUH020000037.1 = NW_028098564.1 Primary Assembly 29760 na IpsContig87 unplaced-scaffold na na JADDUH020000038.1 = NW_028098582.1 Primary Assembly 315677 na IpsContig245 unplaced-scaffold na na JADDUH020000039.1 = NW_028098565.1 Primary Assembly 28858 na IpsContig261 unplaced-scaffold na na JADDUH020000040.1 = NW_028098568.1 Primary Assembly 23802 na IpsContig6_part1 unplaced-scaffold na na JADDUH020000041.1 = NW_028098577.1 Primary Assembly 29434 na IpsContig269 unplaced-scaffold na na JADDUH020000042.1 = NW_028098569.1 Primary Assembly 22780 na IpsContig111 unplaced-scaffold na na JADDUH020000043.1 = NW_028098535.1 Primary Assembly 217963 na IpsContig112 unplaced-scaffold na na JADDUH020000044.1 = NW_028098536.1 Primary Assembly 204769 na IpsContig113 unplaced-scaffold na na JADDUH020000045.1 = NW_028098537.1 Primary Assembly 203637 na IpsContig115 unplaced-scaffold na na JADDUH020000046.1 = NW_028098538.1 Primary Assembly 198354 na IpsContig116 unplaced-scaffold na na JADDUH020000047.1 = NW_028098539.1 Primary Assembly 197204 na IpsContig119 unplaced-scaffold na na JADDUH020000048.1 = NW_028098540.1 Primary Assembly 194260 na IpsContig137 unplaced-scaffold na na JADDUH020000049.1 = NW_028098543.1 Primary Assembly 142061 na IpsContig139 unplaced-scaffold na na JADDUH020000050.1 = NW_028098544.1 Primary Assembly 137261 na IpsContig156 unplaced-scaffold na na JADDUH020000051.1 = NW_028098546.1 Primary Assembly 111500 na IpsContig34 unplaced-scaffold na na JADDUH020000052.1 = NW_028098573.1 Primary Assembly 1120605 na IpsContig35_part1 unplaced-scaffold na na JADDUH020000053.1 = NW_028098574.1 Primary Assembly 498302 na IpsContig171 unplaced-scaffold na na JADDUH020000054.1 = NW_028098549.1 Primary Assembly 80975 na IpsContig173 unplaced-scaffold na na JADDUH020000055.1 = NW_028098550.1 Primary Assembly 78124 na IpsContig179 unplaced-scaffold na na JADDUH020000056.1 = NW_028098551.1 Primary Assembly 64785 na IpsContig212 unplaced-scaffold na na JADDUH020000057.1 = NW_028098557.1 Primary Assembly 40956 na IpsContig58 unplaced-scaffold na na JADDUH020000058.1 = NW_028098576.1 Primary Assembly 678784 na IpsContig73 unplaced-scaffold na na JADDUH020000059.1 = NW_028098578.1 Primary Assembly 446042 na IpsContig217 unplaced-scaffold na na JADDUH020000060.1 = NW_028098558.1 Primary Assembly 39243 na IpsContig76 unplaced-scaffold na na JADDUH020000061.1 = NW_028098579.1 Primary Assembly 417898 na IpsContig77 unplaced-scaffold na na JADDUH020000062.1 = NW_028098580.1 Primary Assembly 417407 na IpsContig93 unplaced-scaffold na na JADDUH020000063.1 = NW_028098583.1 Primary Assembly 283640 na IpsContig94 unplaced-scaffold na na JADDUH020000064.1 = NW_028098584.1 Primary Assembly 281853 na IpsContig239 unplaced-scaffold na na JADDUH020000065.1 = NW_028098562.1 Primary Assembly 30298 na IpsContig252 unplaced-scaffold na na JADDUH020000066.1 = NW_028098566.1 Primary Assembly 25771 na IpsContig99 unplaced-scaffold na na JADDUH020000067.1 = NW_028098585.1 Primary Assembly 260482 na IpsContig257 unplaced-scaffold na na JADDUH020000068.1 = NW_028098567.1 Primary Assembly 24657 na IpsContig273 unplaced-scaffold na na JADDUH020000069.1 = NW_028098570.1 Primary Assembly 21144 na IpsContig100 unplaced-scaffold na na JADDUH020000070.1 = NW_028098529.1 Primary Assembly 258929 na IpsContig103 unplaced-scaffold na na JADDUH020000071.1 = NW_028098530.1 Primary Assembly 248431 na IpsContig104 unplaced-scaffold na na JADDUH020000072.1 = NW_028098531.1 Primary Assembly 237674 na IpsContig105 unplaced-scaffold na na JADDUH020000073.1 = NW_028098532.1 Primary Assembly 232708 na