# Assembly name: ASM1568090v1 # Organism name: Coptis chinensis (flowering plants) # Isolate: HL-2020 # Taxid: 261450 # BioSample: SAMN16094608 # BioProject: PRJNA662860 # Submitter: Hubei University of Chinese Medicine # Date: 2020-12-01 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADFTS01 # Assembly method: SMARTdenovo v. Feb-2018 # Expected final version: Yes # Genome coverage: 73x # Sequencing technology: Illumina NovaSeq; Oxford Nanopore GridION # RefSeq category: Reference Genome # GenBank assembly accession: GCA_015680905.1 # RefSeq assembly accession: GCF_015680905.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM027377.1 = NC_141456.1 Primary Assembly 89969453 na chr2 assembled-molecule 2 Chromosome CM027378.1 = NC_141457.1 Primary Assembly 114376183 na chr3 assembled-molecule 3 Chromosome CM027379.1 = NC_141458.1 Primary Assembly 124611609 na chr4 assembled-molecule 4 Chromosome CM027380.1 = NC_141459.1 Primary Assembly 108390809 na chr5 assembled-molecule 5 Chromosome CM027381.1 = NC_141460.1 Primary Assembly 98746328 na chr6 assembled-molecule 6 Chromosome CM027382.1 = NC_141461.1 Primary Assembly 100393100 na chr7 assembled-molecule 7 Chromosome CM027383.1 = NC_141462.1 Primary Assembly 97188538 na chr8 assembled-molecule 8 Chromosome CM027384.1 = NC_141463.1 Primary Assembly 97686796 na chr9 assembled-molecule 9 Chromosome CM027385.1 = NC_141464.1 Primary Assembly 85171767 na utg4735_pilon_pilon unplaced-scaffold na na JADFTS010000010.1 = NW_028238158.1 Primary Assembly 87945 na utg7788_pilon_pilon unplaced-scaffold na na JADFTS010000011.1 = NW_028238184.1 Primary Assembly 117757 na utg167_pilon_pilon unplaced-scaffold na na JADFTS010000012.1 = NW_028238110.1 Primary Assembly 459841 na utg2290_pilon_pilon unplaced-scaffold na na JADFTS010000013.1 = NW_028238124.1 Primary Assembly 340793 na utg8131_pilon_pilon unplaced-scaffold na na JADFTS010000014.1 = NW_028238185.1 Primary Assembly 39185 na utg10148_pilon_pilon unplaced-scaffold na na JADFTS010000015.1 = NW_028238092.1 Primary Assembly 44046 na utg8721_pilon_pilon unplaced-scaffold na na JADFTS010000016.1 = NW_028238186.1 Primary Assembly 87554 na utg4890_pilon_pilon unplaced-scaffold na na JADFTS010000017.1 = NW_028238160.1 Primary Assembly 71070 na utg1247_pilon_pilon unplaced-scaffold na na JADFTS010000018.1 = NW_028238098.1 Primary Assembly 408494 na utg4047_pilon_pilon unplaced-scaffold na na JADFTS010000019.1 = NW_028238151.1 Primary Assembly 122765 na utg579_pilon_pilon unplaced-scaffold na na JADFTS010000020.1 = NW_028238168.1 Primary Assembly 279919 na utg2617_pilon_pilon unplaced-scaffold na na JADFTS010000021.1 = NW_028238132.1 Primary Assembly 126200 na utg1029_pilon_pilon unplaced-scaffold na na JADFTS010000022.1 = NW_028238094.1 Primary Assembly 679839 na utg1700_pilon_pilon unplaced-scaffold na na JADFTS010000023.1 = NW_028238111.1 Primary Assembly 221102 na utg1580_pilon_pilon unplaced-scaffold na na JADFTS010000024.1 = NW_028238109.1 Primary Assembly 202718 na utg3391_pilon_pilon unplaced-scaffold na na JADFTS010000025.1 = NW_028238146.1 Primary Assembly 93816 na utg2326_pilon_pilon unplaced-scaffold na na JADFTS010000026.1 = NW_028238125.1 Primary Assembly 130613 na utg5340_pilon_pilon unplaced-scaffold na na JADFTS010000027.1 = NW_028238164.1 Primary Assembly 112967 na utg9848_pilon_pilon unplaced-scaffold na na JADFTS010000028.1 = NW_028238196.1 Primary Assembly 32915 na utg1287_pilon_pilon unplaced-scaffold na na JADFTS010000029.1 = NW_028238099.1 Primary Assembly 209885 na utg10707_pilon_pilon unplaced-scaffold na na JADFTS010000030.1 = NW_028238096.1 Primary Assembly 199259 na utg2625_pilon_pilon unplaced-scaffold na na JADFTS010000031.1 = NW_028238133.1 Primary Assembly 226695 na utg2340_pilon_pilon unplaced-scaffold na na JADFTS010000032.1 = NW_028238126.1 Primary Assembly 288382 na utg920_pilon_pilon unplaced-scaffold na na JADFTS010000033.1 = NW_028238193.1 Primary Assembly 316262 na utg653_pilon_pilon unplaced-scaffold na na JADFTS010000034.1 = NW_028238177.1 Primary Assembly 345213 na utg5391_pilon_pilon unplaced-scaffold na na JADFTS010000035.1 = NW_028238166.1 Primary Assembly 220782 na utg2885_pilon_pilon unplaced-scaffold na na JADFTS010000036.1 = NW_028238140.1 Primary Assembly 222465 na utg2560_pilon_pilon unplaced-scaffold na na JADFTS010000037.1 = NW_028238131.1 Primary Assembly 459948 na utg1343_pilon_pilon unplaced-scaffold na na JADFTS010000038.1 = NW_028238100.1 Primary Assembly 421802 na utg1761_pilon_pilon unplaced-scaffold na na JADFTS010000039.1 = NW_028238113.1 Primary Assembly 544770 na utg912_pilon_pilon unplaced-scaffold na na JADFTS010000040.1 = NW_028238191.1 Primary Assembly 425811 na utg662_pilon_pilon unplaced-scaffold na na JADFTS010000041.1 = NW_028238178.1 Primary Assembly 204028 na utg5889_pilon_pilon unplaced-scaffold na na JADFTS010000042.1 = NW_028238169.1 Primary Assembly 73427 na utg1828_pilon_pilon unplaced-scaffold na na JADFTS010000043.1 = NW_028238117.1 Primary Assembly 321562 na utg73_pilon_pilon unplaced-scaffold na na JADFTS010000044.1 = NW_028238182.1 Primary Assembly 310763 na utg3369_pilon_pilon unplaced-scaffold na na JADFTS010000045.1 = NW_028238145.1 Primary Assembly 252445 na utg3132_pilon_pilon unplaced-scaffold na na JADFTS010000046.1 = NW_028238144.1 Primary Assembly 67888 na utg9063_pilon_pilon unplaced-scaffold na na JADFTS010000047.1 = NW_028238190.1 Primary Assembly 107666 na utg617_pilon_pilon unplaced-scaffold na na JADFTS010000048.1 = NW_028238172.1 Primary Assembly 250153 na utg4669_pilon_pilon unplaced-scaffold na na JADFTS010000049.1 = NW_028238156.1 Primary Assembly 254493 na utg2490_pilon_pilon unplaced-scaffold na na JADFTS010000050.1 = NW_028238129.1 Primary Assembly 139734 na utg498_pilon_pilon unplaced-scaffold na na JADFTS010000051.1 = NW_028238162.1 Primary Assembly 154478 na utg1929_pilon_pilon unplaced-scaffold na na JADFTS010000052.1 = NW_028238118.1 Primary Assembly 165716 na utg2345_pilon_pilon unplaced-scaffold na na JADFTS010000053.1 = NW_028238127.1 Primary Assembly 156155 na utg279_pilon_pilon unplaced-scaffold na na JADFTS010000054.1 = NW_028238138.1 Primary Assembly 334633 na utg3728_pilon_pilon unplaced-scaffold na na JADFTS010000055.1 = NW_028238148.1 Primary Assembly 61446 na utg1955_pilon_pilon unplaced-scaffold na na JADFTS010000056.1 = NW_028238119.1 Primary Assembly 629162 na utg2425_pilon_pilon unplaced-scaffold na na JADFTS010000057.1 = NW_028238128.1 Primary Assembly 245919 na utg4887_pilon_pilon unplaced-scaffold na na JADFTS010000058.1 = NW_028238159.1 Primary Assembly 303477 na utg4723_pilon_pilon unplaced-scaffold na na JADFTS010000059.1 = NW_028238157.1 Primary Assembly 91965 na utg1774_pilon_pilon unplaced-scaffold na na JADFTS010000060.1 = NW_028238115.1 Primary Assembly 82273 na utg136_pilon_pilon unplaced-scaffold na na JADFTS010000061.1 = NW_028238102.1 Primary Assembly 636610 na utg4374_pilon_pilon unplaced-scaffold na na JADFTS010000062.1 = NW_028238153.1 Primary Assembly 194509 na utg3672_pilon_pilon unplaced-scaffold na na JADFTS010000063.1 = NW_028238147.1 Primary Assembly 196305 na utg724_pilon_pilon unplaced-scaffold na na JADFTS010000064.1 = NW_028238181.1 Primary Assembly 216141 na utg4262_pilon_pilon unplaced-scaffold na na JADFTS010000065.1 = NW_028238152.1 Primary Assembly 53534 na utg15082_pilon_pilon unplaced-scaffold na na JADFTS010000066.1 = NW_028238106.1 Primary Assembly 92641 na utg9285_pilon_pilon unplaced-scaffold na na JADFTS010000067.1 = NW_028238194.1 Primary Assembly 72738 na utg6399_pilon_pilon unplaced-scaffold na na JADFTS010000068.1 = NW_028238176.1 Primary Assembly 146369 na utg1545_pilon_pilon unplaced-scaffold na na JADFTS010000069.1 = NW_028238107.1 Primary Assembly 281685 na utg2154_pilon_pilon unplaced-scaffold na na JADFTS010000070.1 = NW_028238122.1 Primary Assembly 139252 na utg2528_pilon_pilon unplaced-scaffold na na JADFTS010000071.1 = NW_028238130.1 Primary Assembly 121168 na utg9485_pilon_pilon unplaced-scaffold na na JADFTS010000072.1 = NW_028238195.1 Primary Assembly 230381 na utg6306_pilon_pilon unplaced-scaffold na na JADFTS010000073.1 = NW_028238175.1 Primary Assembly 90357 na utg4632_pilon_pilon unplaced-scaffold na na JADFTS010000074.1 = NW_028238155.1 Primary Assembly 72778 na utg9018_pilon_pilon unplaced-scaffold na na JADFTS010000075.1 = NW_028238189.1 Primary Assembly 60938 na utg3087_pilon_pilon unplaced-scaffold na na JADFTS010000076.1 = NW_028238143.1 Primary Assembly 162680 na utg6750_pilon_pilon unplaced-scaffold na na JADFTS010000077.1 = NW_028238180.1 Primary Assembly 190875 na utg4901_pilon_pilon unplaced-scaffold na na JADFTS010000078.1 = NW_028238161.1 Primary Assembly 70158 na utg610_pilon_pilon unplaced-scaffold na na JADFTS010000079.1 = NW_028238170.1 Primary Assembly 54075 na utg984_pilon_pilon unplaced-scaffold na na JADFTS010000080.1 = NW_028238197.1 Primary Assembly 81584 na utg1995_pilon_pilon unplaced-scaffold na na JADFTS010000081.1 = NW_028238120.1 Primary Assembly 77820 na utg1487_pilon_pilon unplaced-scaffold na na JADFTS010000082.1 = NW_028238105.1 Primary Assembly 90408 na utg1782_pilon_pilon unplaced-scaffold na na JADFTS010000083.1 = NW_028238116.1 Primary Assembly 196654 na utg14262_pilon_pilon unplaced-scaffold na na JADFTS010000084.1 = NW_028238104.1 Primary Assembly 85335 na utg273_pilon_pilon unplaced-scaffold na na JADFTS010000085.1 = NW_028238137.1 Primary Assembly 115032 na utg3977_pilon_pilon unplaced-scaffold na na JADFTS010000086.1 = NW_028238150.1 Primary Assembly 189457 na utg7589_pilon_pilon unplaced-scaffold na na JADFTS010000087.1 = NW_028238183.1 Primary Assembly 74817 na utg9198_pilon_pilon unplaced-scaffold na na JADFTS010000088.1 = NW_028238192.1 Primary Assembly 50203 na utg6276_pilon_pilon unplaced-scaffold na na JADFTS010000089.1 = NW_028238173.1 Primary Assembly 66120 na utg545_pilon_pilon unplaced-scaffold na na JADFTS010000090.1 = NW_028238167.1 Primary Assembly 67397 na utg10106_pilon_pilon unplaced-scaffold na na JADFTS010000091.1 = NW_028238091.1 Primary Assembly 41952 na utg1407_pilon_pilon unplaced-scaffold na na JADFTS010000092.1 = NW_028238103.1 Primary Assembly 241786 na utg2180_pilon_pilon unplaced-scaffold na na JADFTS010000093.1 = NW_028238123.1 Primary Assembly 645365 na utg6152_pilon_pilon unplaced-scaffold na na JADFTS010000094.1 = NW_028238171.1 Primary Assembly 128825 na utg270_pilon_pilon unplaced-scaffold na na JADFTS010000095.1 = NW_028238134.1 Primary Assembly 215736 na utg2721_pilon_pilon unplaced-scaffold na na JADFTS010000096.1 = NW_028238135.1 Primary Assembly 56905 na utg5192_pilon_pilon unplaced-scaffold na na JADFTS010000097.1 = NW_028238163.1 Primary Assembly 43708 na utg6677_pilon_pilon unplaced-scaffold na na JADFTS010000098.1 = NW_028238179.1 Primary Assembly 53701 na utg3857_pilon_pilon unplaced-scaffold na na JADFTS010000099.1 = NW_028238149.1 Primary Assembly 71390 na utg6277_pilon_pilon unplaced-scaffold na na JADFTS010000100.1 = NW_028238174.1 Primary Assembly 84158 na utg3055_pilon_pilon unplaced-scaffold na na JADFTS010000101.1 = NW_028238142.1 Primary Assembly 45115 na utg1364_pilon_pilon unplaced-scaffold na na JADFTS010000102.1 = NW_028238101.1 Primary Assembly 76306 na utg10570_pilon_pilon unplaced-scaffold na na JADFTS010000103.1 = NW_028238095.1 Primary Assembly 77561 na utg8755_pilon_pilon unplaced-scaffold na na JADFTS010000104.1 = NW_028238187.1 Primary Assembly 88764 na utg2104_pilon_pilon unplaced-scaffold na na JADFTS010000105.1 = NW_028238121.1 Primary Assembly 151689 na utg11830_pilon_pilon unplaced-scaffold na na JADFTS010000106.1 = NW_028238097.1 Primary Assembly 65774 na utg157_pilon_pilon unplaced-scaffold na na JADFTS010000107.1 = NW_028238108.1 Primary Assembly 355313 na utg10163_pilon_pilon unplaced-scaffold na na JADFTS010000108.1 = NW_028238093.1 Primary Assembly 40652 na utg8811_pilon_pilon unplaced-scaffold na na JADFTS010000109.1 = NW_028238188.1 Primary Assembly 59333 na utg535_pilon_pilon unplaced-scaffold na na JADFTS010000110.1 = NW_028238165.1 Primary Assembly 152370 na utg1766_pilon_pilon unplaced-scaffold na na JADFTS010000111.1 = NW_028238114.1 Primary Assembly 100953 na utg2731_pilon_pilon unplaced-scaffold na na JADFTS010000112.1 = NW_028238136.1 Primary Assembly 101992 na utg3028_pilon_pilon unplaced-scaffold na na JADFTS010000113.1 = NW_028238141.1 Primary Assembly 69526 na utg17383_pilon_pilon unplaced-scaffold na na JADFTS010000114.1 = NW_028238112.1 Primary Assembly 47477 na utg2803_pilon_pilon unplaced-scaffold na na JADFTS010000115.1 = NW_028238139.1 Primary Assembly 93251 na utg4543_pilon_pilon unplaced-scaffold na na JADFTS010000116.1 = NW_028238154.1 Primary Assembly 89388 na Pltd assembled-molecule Pltd Chloroplast na <> NC_036485.1 non-nuclear 155484 na