# Assembly name: Tmad_KSU_1.1 # Organism name: Tribolium madens (black flour beetle) # Infraspecific name: breed=KSU strain # Isolate: multiple individuals # Sex: pooled male and female # Taxid: 41895 # BioSample: SAMN16398860 # BioProject: PRJNA668153 # Submitter: Kansas State University # Date: 2020-11-10 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JADDYM01 # Assembly method: AllPaths v. G-40028; AllPaths v. G-42337; HiRise v. Devetail 2019 # Expected final version: yes # Genome coverage: 22.0x # Sequencing technology: Illumina GAII # RefSeq category: Representative Genome # GenBank assembly accession: GCA_015345945.1 # RefSeq assembly accession: GCF_015345945.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015345965.1 GCF_015345965.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Scaffold_100;HRSCAF=253 unplaced-scaffold na na JADDYM010000100.1 = NW_025400961.1 Primary Assembly 1259 na Scaffold_101;HRSCAF=255 unplaced-scaffold na na JADDYM010000101.1 = NW_025400962.1 Primary Assembly 1191 na Scaffold_102;HRSCAF=256 unplaced-scaffold na na JADDYM010000102.1 = NW_025400963.1 Primary Assembly 1181 na Scaffold_103;HRSCAF=257 unplaced-scaffold na na JADDYM010000103.1 = NW_025400964.1 Primary Assembly 1222 na Scaffold_104;HRSCAF=258 unplaced-scaffold na na JADDYM010000104.1 = NW_025400965.1 Primary Assembly 1221 na Scaffold_106;HRSCAF=264 unplaced-scaffold na na JADDYM010000105.1 = NW_025400966.1 Primary Assembly 1158 na Scaffold_107;HRSCAF=265 unplaced-scaffold na na JADDYM010000106.1 = NW_025400967.1 Primary Assembly 1179 na Scaffold_108;HRSCAF=268 unplaced-scaffold na na JADDYM010000107.1 = NW_025400968.1 Primary Assembly 1100 na Scaffold_109;HRSCAF=270 unplaced-scaffold na na JADDYM010000108.1 = NW_025400969.1 Primary Assembly 1075 na Scaffold_10;HRSCAF=94 unplaced-scaffold na na JADDYM010000010.1 = NW_025400970.1 Primary Assembly 6797 na Scaffold_110;HRSCAF=271 unplaced-scaffold na na JADDYM010000109.1 = NW_025400971.1 Primary Assembly 1101 na Scaffold_111;HRSCAF=274 unplaced-scaffold na na JADDYM010000110.1 = NW_025400972.1 Primary Assembly 933 na Scaffold_113;HRSCAF=276 unplaced-scaffold na na JADDYM010000111.1 = NW_025400973.1 Primary Assembly 1014 na Scaffold_114;HRSCAF=277 unplaced-scaffold na na JADDYM010000112.1 = NW_025400974.1 Primary Assembly 951 na Scaffold_11;HRSCAF=98;Tcas5.2_LG3b unplaced-scaffold na na JADDYM010000011.1 = NW_025400975.1 Primary Assembly 9488471 na Scaffold_12;HRSCAF=101 unplaced-scaffold na na JADDYM010000012.1 = NW_025400976.1 Primary Assembly 6048 na Scaffold_13;HRSCAF=106 unplaced-scaffold na na JADDYM010000013.1 = NW_025400977.1 Primary Assembly 1737 na Scaffold_14;HRSCAF=107 unplaced-scaffold na na JADDYM010000014.1 = NW_025400978.1 Primary Assembly 9809 na Scaffold_15;HRSCAF=108 unplaced-scaffold na na JADDYM010000015.1 = NW_025400979.1 Primary Assembly 5625 na Scaffold_16;HRSCAF=112 unplaced-scaffold na na JADDYM010000016.1 = NW_025400980.1 Primary Assembly 5745 na Scaffold_17;HRSCAF=113 unplaced-scaffold na na JADDYM010000017.1 = NW_025400981.1 Primary Assembly 5742 na Scaffold_18;HRSCAF=114 unplaced-scaffold na na JADDYM010000018.1 = NW_025400982.1 Primary Assembly 5445 na Scaffold_19;HRSCAF=116;Tcas5.2_LG9 unplaced-scaffold na na JADDYM010000019.1 = NW_025400983.1 Primary Assembly 17610752 na Scaffold_1;HRSCAF=32;Tcas5.2_LG8 unplaced-scaffold na na JADDYM010000001.1 = NW_025400984.1 Primary Assembly 11620447 na Scaffold_20;HRSCAF=117;Tcas5.2_LG4 unplaced-scaffold na na JADDYM010000020.1 = NW_025400985.1 Primary Assembly 14877774 na Scaffold_21;HRSCAF=118 unplaced-scaffold na na JADDYM010000021.1 = NW_025400986.1 Primary Assembly 5263 na Scaffold_22;HRSCAF=119 unplaced-scaffold na na JADDYM010000022.1 = NW_025400987.1 Primary Assembly 5178 na Scaffold_23;HRSCAF=120 unplaced-scaffold na na JADDYM010000023.1 = NW_025400988.1 Primary Assembly 5030 na Scaffold_24;HRSCAF=122 unplaced-scaffold na na JADDYM010000024.1 = NW_025400989.1 Primary Assembly 4955 na Scaffold_25;HRSCAF=123 unplaced-scaffold na na JADDYM010000025.1 = NW_025400990.1 Primary Assembly 4953 na Scaffold_26;HRSCAF=124 unplaced-scaffold na na JADDYM010000026.1 = NW_025400991.1 Primary Assembly 4610 na Scaffold_27;HRSCAF=125 unplaced-scaffold na na JADDYM010000027.1 = NW_025400992.1 Primary Assembly 4536 na Scaffold_28;HRSCAF=126 unplaced-scaffold na na JADDYM010000028.1 = NW_025400993.1 Primary Assembly 4541 na Scaffold_29;HRSCAF=128 unplaced-scaffold na na JADDYM010000029.1 = NW_025400994.1 Primary Assembly 4047 na Scaffold_2;HRSCAF=44;Tcas5.2_LGX unplaced-scaffold na na JADDYM010000002.1 = NW_025400995.1 Primary Assembly 8458022 na Scaffold_30;HRSCAF=129 unplaced-scaffold na na JADDYM010000030.1 = NW_025400996.1 Primary Assembly 3723 na Scaffold_31;HRSCAF=131 unplaced-scaffold na na JADDYM010000031.1 = NW_025400997.1 Primary Assembly 39674 na Scaffold_32;HRSCAF=132 unplaced-scaffold na na JADDYM010000032.1 = NW_025400998.1 Primary Assembly 3515 na Scaffold_33;HRSCAF=133 unplaced-scaffold na na JADDYM010000033.1 = NW_025400999.1 Primary Assembly 3277 na Scaffold_34;HRSCAF=135 unplaced-scaffold na na JADDYM010000034.1 = NW_025401000.1 Primary Assembly 3240 na Scaffold_35;HRSCAF=136 unplaced-scaffold na na JADDYM010000035.1 = NW_025401001.1 Primary Assembly 3185 na Scaffold_36;HRSCAF=137 unplaced-scaffold na na JADDYM010000036.1 = NW_025401002.1 Primary Assembly 3176 na Scaffold_37;HRSCAF=138 unplaced-scaffold na na JADDYM010000037.1 = NW_025401003.1 Primary Assembly 3113 na Scaffold_38;HRSCAF=139 unplaced-scaffold na na JADDYM010000038.1 = NW_025401004.1 Primary Assembly 3111 na Scaffold_39;HRSCAF=140 unplaced-scaffold na na JADDYM010000039.1 = NW_025401005.1 Primary Assembly 3062 na Scaffold_3;HRSCAF=73;Tcas5.2_LG2 unplaced-scaffold na na JADDYM010000003.1 = NW_025401006.1 Primary Assembly 15274290 na Scaffold_40;HRSCAF=142 unplaced-scaffold na na JADDYM010000040.1 = NW_025401007.1 Primary Assembly 3002 na Scaffold_41;HRSCAF=144 unplaced-scaffold na na JADDYM010000041.1 = NW_025401008.1 Primary Assembly 2968 na Scaffold_42;HRSCAF=147 unplaced-scaffold na na JADDYM010000042.1 = NW_025401009.1 Primary Assembly 2708 na Scaffold_43;HRSCAF=149 unplaced-scaffold na na JADDYM010000043.1 = NW_025401010.1 Primary Assembly 2634 na Scaffold_44;HRSCAF=150 unplaced-scaffold na na JADDYM010000044.1 = NW_025401011.1 Primary Assembly 2520 na Scaffold_45;HRSCAF=151 unplaced-scaffold na na JADDYM010000045.1 = NW_025401012.1 Primary Assembly 2504 na Scaffold_46;HRSCAF=152 unplaced-scaffold na na JADDYM010000046.1 = NW_025401013.1 Primary Assembly 2427 na Scaffold_47;HRSCAF=153 unplaced-scaffold na na JADDYM010000047.1 = NW_025401014.1 Primary Assembly 2424 na Scaffold_48;HRSCAF=154 unplaced-scaffold na na JADDYM010000048.1 = NW_025401015.1 Primary Assembly 2353 na Scaffold_49;HRSCAF=155 unplaced-scaffold na na JADDYM010000049.1 = NW_025401016.1 Primary Assembly 2367 na Scaffold_4;HRSCAF=75 unplaced-scaffold na na JADDYM010000004.1 = NW_025401017.1 Primary Assembly 15340 na Scaffold_50;HRSCAF=157 unplaced-scaffold na na JADDYM010000050.1 = NW_025401018.1 Primary Assembly 2342 na Scaffold_51;HRSCAF=159 unplaced-scaffold na na JADDYM010000051.1 = NW_025401019.1 Primary Assembly 2302 na Scaffold_52;HRSCAF=160 unplaced-scaffold na na JADDYM010000052.1 = NW_025401020.1 Primary Assembly 2300 na Scaffold_53;HRSCAF=161 unplaced-scaffold na na JADDYM010000053.1 = NW_025401021.1 Primary Assembly 2271 na Scaffold_54;HRSCAF=162 unplaced-scaffold na na JADDYM010000054.1 = NW_025401022.1 Primary Assembly 2182 na Scaffold_55;HRSCAF=164 unplaced-scaffold na na JADDYM010000055.1 = NW_025401023.1 Primary Assembly 2189 na Scaffold_56;HRSCAF=166 unplaced-scaffold na na JADDYM010000056.1 = NW_025401024.1 Primary Assembly 2177 na Scaffold_57;HRSCAF=167 unplaced-scaffold na na JADDYM010000057.1 = NW_025401025.1 Primary Assembly 2172 na Scaffold_58;HRSCAF=168 unplaced-scaffold na na JADDYM010000058.1 = NW_025401026.1 Primary Assembly 2103 na Scaffold_59;HRSCAF=170 unplaced-scaffold na na JADDYM010000059.1 = NW_025401027.1 Primary Assembly 2103 na Scaffold_5;HRSCAF=78 unplaced-scaffold na na JADDYM010000005.1 = NW_025401028.1 Primary Assembly 10772 na Scaffold_60;HRSCAF=172 unplaced-scaffold na na JADDYM010000060.1 = NW_025401029.1 Primary Assembly 2064 na Scaffold_61;HRSCAF=176 unplaced-scaffold na na JADDYM010000061.1 = NW_025401030.1 Primary Assembly 2009 na Scaffold_62;HRSCAF=177 unplaced-scaffold na na JADDYM010000062.1 = NW_025401031.1 Primary Assembly 2003 na Scaffold_63;HRSCAF=180 unplaced-scaffold na na JADDYM010000063.1 = NW_025401032.1 Primary Assembly 1965 na Scaffold_64;HRSCAF=182 unplaced-scaffold na na JADDYM010000064.1 = NW_025401033.1 Primary Assembly 1943 na Scaffold_65;HRSCAF=184 unplaced-scaffold na na JADDYM010000065.1 = NW_025401034.1 Primary Assembly 1931 na Scaffold_66;HRSCAF=186 unplaced-scaffold na na JADDYM010000066.1 = NW_025401035.1 Primary Assembly 1898 na Scaffold_67;HRSCAF=188 unplaced-scaffold na na JADDYM010000067.1 = NW_025401036.1 Primary Assembly 1878 na Scaffold_68;HRSCAF=189 unplaced-scaffold na na JADDYM010000068.1 = NW_025401037.1 Primary Assembly 1863 na Scaffold_69;HRSCAF=190 unplaced-scaffold na na JADDYM010000069.1 = NW_025401038.1 Primary Assembly 1856 na Scaffold_6;HRSCAF=84 unplaced-scaffold na na JADDYM010000006.1 = NW_025401039.1 Primary Assembly 8852 na Scaffold_70;HRSCAF=191 unplaced-scaffold na na JADDYM010000070.1 = NW_025401040.1 Primary Assembly 1856 na Scaffold_71;HRSCAF=194;Tcas5.2_LG6 unplaced-scaffold na na JADDYM010000071.1 = NW_025401041.1 Primary Assembly 8948946 na Scaffold_72;HRSCAF=195 unplaced-scaffold na na JADDYM010000072.1 = NW_025401042.1 Primary Assembly 1772 na Scaffold_73;HRSCAF=196 unplaced-scaffold na na JADDYM010000073.1 = NW_025401043.1 Primary Assembly 1768 na Scaffold_74;HRSCAF=197 unplaced-scaffold na na JADDYM010000074.1 = NW_025401044.1 Primary Assembly 1756 na Scaffold_75;HRSCAF=198 unplaced-scaffold na na JADDYM010000075.1 = NW_025401045.1 Primary Assembly 1753 na Scaffold_76;HRSCAF=200 unplaced-scaffold na na JADDYM010000076.1 = NW_025401046.1 Primary Assembly 1717 na Scaffold_77;HRSCAF=202 unplaced-scaffold na na JADDYM010000077.1 = NW_025401047.1 Primary Assembly 1700 na Scaffold_78;HRSCAF=204 unplaced-scaffold na na JADDYM010000078.1 = NW_025401048.1 Primary Assembly 1679 na Scaffold_79;HRSCAF=205 unplaced-scaffold na na JADDYM010000079.1 = NW_025401049.1 Primary Assembly 1662 na Scaffold_7;HRSCAF=85;Tcas5.2_LG10 unplaced-scaffold na na JADDYM010000007.1 = NW_025401050.1 Primary Assembly 11418420 na Scaffold_80;HRSCAF=206 unplaced-scaffold na na JADDYM010000080.1 = NW_025401051.1 Primary Assembly 1624 na Scaffold_81;HRSCAF=210 unplaced-scaffold na na JADDYM010000081.1 = NW_025401052.1 Primary Assembly 1630 na Scaffold_82;HRSCAF=213 unplaced-scaffold na na JADDYM010000082.1 = NW_025401053.1 Primary Assembly 1604 na Scaffold_83;HRSCAF=214 unplaced-scaffold na na JADDYM010000083.1 = NW_025401054.1 Primary Assembly 1600 na Scaffold_84;HRSCAF=216 unplaced-scaffold na na JADDYM010000084.1 = NW_025401055.1 Primary Assembly 1582 na Scaffold_85;HRSCAF=218 unplaced-scaffold na na JADDYM010000085.1 = NW_025401056.1 Primary Assembly 1577 na Scaffold_86;HRSCAF=219 unplaced-scaffold na na JADDYM010000086.1 = NW_025401057.1 Primary Assembly 1568 na Scaffold_87;HRSCAF=220 unplaced-scaffold na na JADDYM010000087.1 = NW_025401058.1 Primary Assembly 1518 na Scaffold_88;HRSCAF=222 unplaced-scaffold na na JADDYM010000088.1 = NW_025401059.1 Primary Assembly 1519 na Scaffold_89;HRSCAF=224 unplaced-scaffold na na JADDYM010000089.1 = NW_025401060.1 Primary Assembly 1478 na Scaffold_8;HRSCAF=86 unplaced-scaffold na na JADDYM010000008.1 = NW_025401061.1 Primary Assembly 8465 na Scaffold_90;HRSCAF=226 unplaced-scaffold na na JADDYM010000090.1 = NW_025401062.1 Primary Assembly 1465 na Scaffold_91;HRSCAF=231;Tcas5.2_LG7 unplaced-scaffold na na JADDYM010000091.1 = NW_025401063.1 Primary Assembly 19633174 na Scaffold_92;HRSCAF=232 unplaced-scaffold na na JADDYM010000092.1 = NW_025401064.1 Primary Assembly 1422 na Scaffold_93;HRSCAF=233 unplaced-scaffold na na JADDYM010000093.1 = NW_025401065.1 Primary Assembly 1409 na Scaffold_94;HRSCAF=237 unplaced-scaffold na na JADDYM010000094.1 = NW_025401066.1 Primary Assembly 1365 na Scaffold_95;HRSCAF=239 unplaced-scaffold na na JADDYM010000095.1 = NW_025401067.1 Primary Assembly 1284 na Scaffold_96;HRSCAF=242;Tcas5.2_LG5 unplaced-scaffold na na JADDYM010000096.1 = NW_025401068.1 Primary Assembly 16538574 na Scaffold_97;HRSCAF=244;Tcas5.2_LG3a unplaced-scaffold na na JADDYM010000097.1 = NW_025401069.1 Primary Assembly 15175020 na Scaffold_98;HRSCAF=248 unplaced-scaffold na na JADDYM010000098.1 = NW_025401070.1 Primary Assembly 1297 na Scaffold_99;HRSCAF=251 unplaced-scaffold na na JADDYM010000099.1 = NW_025401071.1 Primary Assembly 1142 na Scaffold_9;HRSCAF=87 unplaced-scaffold na na JADDYM010000009.1 = NW_025401072.1 Primary Assembly 8408 na