# Assembly name: fEleEle1.pri # Organism name: Electrophorus electricus (electric eel) # Isolate: fEleEle1 # Taxid: 8005 # BioSample: SAMN12623625 # BioProject: PRJNA561981 # Submitter: Vertebrate Genomes Project # Date: 2020-06-23 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JABVME01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina poli # Expected final version: no # Genome coverage: 52.97x # Sequencing technology: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_013358815.1 # RefSeq assembly accession: GCF_013358815.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_013347915.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_013358875.1 GCF_013358875.1 Primary Assembly ## GCA_013358885.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM023680.1 = NC_049535.1 Primary Assembly 36391443 na SUPER_2 assembled-molecule 2 Chromosome CM023681.1 = NC_049536.1 Primary Assembly 35831752 na SUPER_3 assembled-molecule 3 Chromosome CM023682.1 = NC_049537.1 Primary Assembly 32540680 na SUPER_4 assembled-molecule 4 Chromosome CM023683.1 = NC_049538.1 Primary Assembly 32347915 na SUPER_5 assembled-molecule 5 Chromosome CM023684.1 = NC_049539.1 Primary Assembly 30137670 na SUPER_6 assembled-molecule 6 Chromosome CM023685.1 = NC_049540.1 Primary Assembly 30780680 na SUPER_7 assembled-molecule 7 Chromosome CM023686.1 = NC_049541.1 Primary Assembly 28649539 na SUPER_8 assembled-molecule 8 Chromosome CM023687.1 = NC_049542.1 Primary Assembly 27587819 na SUPER_9 assembled-molecule 9 Chromosome CM023688.1 = NC_049543.1 Primary Assembly 26196259 na SUPER_10 assembled-molecule 10 Chromosome CM023689.1 = NC_049544.1 Primary Assembly 25664172 na SUPER_11 assembled-molecule 11 Chromosome CM023690.1 = NC_049545.1 Primary Assembly 25558895 na SUPER_12 assembled-molecule 12 Chromosome CM023691.1 = NC_049546.1 Primary Assembly 23225763 na SUPER_13 assembled-molecule 13 Chromosome CM023692.1 = NC_049547.1 Primary Assembly 22788488 na SUPER_14 assembled-molecule 14 Chromosome CM023693.1 = NC_049548.1 Primary Assembly 22703151 na SUPER_15 assembled-molecule 15 Chromosome CM023694.1 = NC_049549.1 Primary Assembly 19344341 na SUPER_16 assembled-molecule 16 Chromosome CM023695.1 = NC_049550.1 Primary Assembly 18983019 na SUPER_17 assembled-molecule 17 Chromosome CM023696.1 = NC_049551.1 Primary Assembly 18154453 na SUPER_18 assembled-molecule 18 Chromosome CM023697.1 = NC_049552.1 Primary Assembly 17062102 na SUPER_19 assembled-molecule 19 Chromosome CM023698.1 = NC_049553.1 Primary Assembly 16409991 na SUPER_20 assembled-molecule 20 Chromosome CM023699.1 = NC_049554.1 Primary Assembly 15907486 na SUPER_21 assembled-molecule 21 Chromosome CM023700.1 = NC_049555.1 Primary Assembly 15813368 na SUPER_22 assembled-molecule 22 Chromosome CM023701.1 = NC_049556.1 Primary Assembly 14621190 na SUPER_23 assembled-molecule 23 Chromosome CM023702.1 = NC_049557.1 Primary Assembly 12386329 na SUPER_24 assembled-molecule 24 Chromosome CM023703.1 = NC_049558.1 Primary Assembly 11982566 na SUPER_25 assembled-molecule 25 Chromosome CM023704.1 = NC_049559.1 Primary Assembly 11969312 na SUPER_26 assembled-molecule 26 Chromosome CM023705.1 = NC_049560.1 Primary Assembly 10945573 na SUPER_5_unloc_4 unlocalized-scaffold 5 Chromosome JABVME010000010.1 = NW_023336128.1 Primary Assembly 128528 na SUPER_5_unloc_1 unlocalized-scaffold 5 Chromosome JABVME010000011.1 = NW_023336124.1 Primary Assembly 199541 na SUPER_5_unloc_2 unlocalized-scaffold 5 Chromosome JABVME010000012.1 = NW_023336126.1 Primary Assembly 164553 na SUPER_5_unloc_3 unlocalized-scaffold 5 Chromosome JABVME010000013.1 = NW_023336127.1 Primary Assembly 129345 na SUPER_5_unloc_5 unlocalized-scaffold 5 Chromosome JABVME010000014.1 = NW_023336129.1 Primary Assembly 73787 na SUPER_5_unloc_6 unlocalized-scaffold 5 Chromosome JABVME010000015.1 = NW_023336130.1 Primary Assembly 66871 na SUPER_5_unloc_7 unlocalized-scaffold 5 Chromosome JABVME010000016.1 = NW_023336131.1 Primary Assembly 61118 na SUPER_5_unloc_8 unlocalized-scaffold 5 Chromosome JABVME010000017.1 = NW_023336132.1 Primary Assembly 59513 na SUPER_5_unloc_9 unlocalized-scaffold 5 Chromosome JABVME010000018.1 = NW_023336133.1 Primary Assembly 52108 na SUPER_5_unloc_10 unlocalized-scaffold 5 Chromosome JABVME010000019.1 = NW_023336125.1 Primary Assembly 46199 na S50 unplaced-scaffold na na JABVME010000036.1 = NW_023336134.1 Primary Assembly 204031 na S51 unplaced-scaffold na na JABVME010000037.1 = NW_023336135.1 Primary Assembly 104201 na S54 unplaced-scaffold na na JABVME010000039.1 = NW_023336136.1 Primary Assembly 1433108 na S56 unplaced-scaffold na na JABVME010000040.1 = NW_023336137.1 Primary Assembly 179442 na S57 unplaced-scaffold na na JABVME010000041.1 = NW_023336138.1 Primary Assembly 89420 na S58 unplaced-scaffold na na JABVME010000042.1 = NW_023336139.1 Primary Assembly 73069 na S59 unplaced-scaffold na na JABVME010000043.1 = NW_023336140.1 Primary Assembly 50068 na scaffold_15_arrow_ctg1 unplaced-scaffold na na JABVME010000044.1 = NW_023336167.1 Primary Assembly 1944 na scaffold_100_arrow_ctg1 unplaced-scaffold na na JABVME010000045.1 = NW_023336141.1 Primary Assembly 41094 na scaffold_101_arrow_ctg1 unplaced-scaffold na na JABVME010000046.1 = NW_023336142.1 Primary Assembly 39633 na scaffold_102_arrow_ctg1 unplaced-scaffold na na JABVME010000047.1 = NW_023336143.1 Primary Assembly 37876 na scaffold_103_arrow_ctg1 unplaced-scaffold na na JABVME010000048.1 = NW_023336144.1 Primary Assembly 37562 na scaffold_104_arrow_ctg1 unplaced-scaffold na na JABVME010000049.1 = NW_023336145.1 Primary Assembly 37238 na scaffold_105_arrow_ctg1 unplaced-scaffold na na JABVME010000050.1 = NW_023336146.1 Primary Assembly 36537 na scaffold_106_arrow_ctg1 unplaced-scaffold na na JABVME010000051.1 = NW_023336147.1 Primary Assembly 34929 na scaffold_107_arrow_ctg1 unplaced-scaffold na na JABVME010000052.1 = NW_023336148.1 Primary Assembly 34350 na scaffold_108_arrow_ctg1 unplaced-scaffold na na JABVME010000053.1 = NW_023336149.1 Primary Assembly 33950 na scaffold_110_arrow_ctg1 unplaced-scaffold na na JABVME010000054.1 = NW_023336150.1 Primary Assembly 32151 na scaffold_111_arrow_ctg1 unplaced-scaffold na na JABVME010000055.1 = NW_023336151.1 Primary Assembly 31009 na scaffold_112_arrow_ctg1 unplaced-scaffold na na JABVME010000056.1 = NW_023336152.1 Primary Assembly 30700 na scaffold_113_arrow_ctg1 unplaced-scaffold na na JABVME010000057.1 = NW_023336153.1 Primary Assembly 30955 na scaffold_114_arrow_ctg1 unplaced-scaffold na na JABVME010000058.1 = NW_023336154.1 Primary Assembly 27958 na scaffold_116_arrow_ctg1 unplaced-scaffold na na JABVME010000059.1 = NW_023336155.1 Primary Assembly 23733 na scaffold_117_arrow_ctg1 unplaced-scaffold na na JABVME010000060.1 = NW_023336156.1 Primary Assembly 23414 na scaffold_119_arrow_ctg1 unplaced-scaffold na na JABVME010000061.1 = NW_023336157.1 Primary Assembly 22633 na scaffold_120_arrow_ctg1 unplaced-scaffold na na JABVME010000062.1 = NW_023336158.1 Primary Assembly 21323 na scaffold_121_arrow_ctg1 unplaced-scaffold na na JABVME010000063.1 = NW_023336159.1 Primary Assembly 20782 na scaffold_122_arrow_ctg1 unplaced-scaffold na na JABVME010000064.1 = NW_023336160.1 Primary Assembly 20053 na scaffold_123_arrow_ctg1 unplaced-scaffold na na JABVME010000065.1 = NW_023336161.1 Primary Assembly 20426 na scaffold_124_arrow_ctg1 unplaced-scaffold na na JABVME010000066.1 = NW_023336162.1 Primary Assembly 11327 na scaffold_125_arrow_ctg1 unplaced-scaffold na na JABVME010000067.1 = NW_023336163.1 Primary Assembly 9742 na scaffold_126_arrow_ctg1 unplaced-scaffold na na JABVME010000068.1 = NW_023336164.1 Primary Assembly 6738 na scaffold_127_arrow_ctg1 unplaced-scaffold na na JABVME010000069.1 = NW_023336165.1 Primary Assembly 5578 na scaffold_128_arrow_ctg1 unplaced-scaffold na na JABVME010000070.1 = NW_023336166.1 Primary Assembly 1911 na scaffold_57_arrow_ctg1 unplaced-scaffold na na JABVME010000071.1 = NW_023336168.1 Primary Assembly 188628 na scaffold_58_arrow_ctg1 unplaced-scaffold na na JABVME010000072.1 = NW_023336169.1 Primary Assembly 185040 na scaffold_63_arrow_ctg1 unplaced-scaffold na na JABVME010000073.1 = NW_023336170.1 Primary Assembly 124061 na scaffold_64_arrow_ctg1 unplaced-scaffold na na JABVME010000074.1 = NW_023336171.1 Primary Assembly 117734 na scaffold_67_arrow_ctg1 unplaced-scaffold na na JABVME010000075.1 = NW_023336172.1 Primary Assembly 96119 na scaffold_71_arrow_ctg1 unplaced-scaffold na na JABVME010000076.1 = NW_023336173.1 Primary Assembly 86413 na scaffold_72_arrow_ctg1 unplaced-scaffold na na JABVME010000077.1 = NW_023336174.1 Primary Assembly 83421 na scaffold_73_arrow_ctg1 unplaced-scaffold na na JABVME010000078.1 = NW_023336175.1 Primary Assembly 79360 na scaffold_74_arrow_ctg1 unplaced-scaffold na na JABVME010000079.1 = NW_023336176.1 Primary Assembly 77134 na scaffold_77_arrow_ctg1 unplaced-scaffold na na JABVME010000080.1 = NW_023336177.1 Primary Assembly 70944 na scaffold_78_arrow_ctg1 unplaced-scaffold na na JABVME010000081.1 = NW_023336178.1 Primary Assembly 67901 na scaffold_80_arrow_ctg1 unplaced-scaffold na na JABVME010000082.1 = NW_023336179.1 Primary Assembly 65193 na scaffold_86_arrow_ctg1 unplaced-scaffold na na JABVME010000083.1 = NW_023336180.1 Primary Assembly 54193 na scaffold_88_arrow_ctg1 unplaced-scaffold na na JABVME010000084.1 = NW_023336181.1 Primary Assembly 52817 na scaffold_90_arrow_ctg1 unplaced-scaffold na na JABVME010000085.1 = NW_023336182.1 Primary Assembly 50956 na scaffold_91_arrow_ctg1 unplaced-scaffold na na JABVME010000086.1 = NW_023336183.1 Primary Assembly 50349 na scaffold_92_arrow_ctg1 unplaced-scaffold na na JABVME010000087.1 = NW_023336184.1 Primary Assembly 50500 na scaffold_98_arrow_ctg1 unplaced-scaffold na na JABVME010000088.1 = NW_023336185.1 Primary Assembly 42182 na scaffold_99_arrow_ctg1 unplaced-scaffold na na JABVME010000089.1 = NW_023336186.1 Primary Assembly 41607 na fEleEle1_MT assembled-molecule MT Mitochondrion CM023706.1 <> na non-nuclear 17309 na