# Assembly name: mMusErm1.Pri # Organism name: Mustela erminea (ermine) # Isolate: mMusErm1 # Sex: male # Taxid: 36723 # BioSample: SAMN12611999 # BioProject: PRJNA561931 # Submitter: Vertebrate Genomes Project # Date: 2020-01-03 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNLY01 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. 1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.2; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-17; VGP assembly pipeline individual v. 1.6 # Expected final version: no # Genome coverage: 62.86x # Sequencing technology: PacBio Sequel; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009829155.1 # RefSeq assembly accession: GCF_009829155.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_009829165.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009829235.1 GCF_009829235.1 Primary Assembly ## GCA_009829255.1 GCF_009917685.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_1_arrow_ctg1 assembled-molecule 1 Chromosome CM020568.1 = NC_045614.1 Primary Assembly 220353689 na scaffold_2_arrow_ctg1 assembled-molecule 2 Chromosome CM020569.1 = NC_045615.1 Primary Assembly 165678983 na Super_Scaffold_4 assembled-molecule 3 Chromosome CM020570.1 = NC_045616.1 Primary Assembly 164385424 na scaffold_4_arrow_ctg1 assembled-molecule 4 Chromosome CM020571.1 = NC_045617.1 Primary Assembly 151340014 na scaffold_5_arrow_ctg1 assembled-molecule 5 Chromosome CM020572.1 = NC_045618.1 Primary Assembly 148087453 na scaffold_6_arrow_ctg1 assembled-molecule 6 Chromosome CM020573.1 = NC_045619.1 Primary Assembly 145111546 na scaffold_7_arrow_ctg1 assembled-molecule 7 Chromosome CM020574.1 = NC_045620.1 Primary Assembly 141458160 na Super_Scaffold_1 assembled-molecule 8 Chromosome CM020575.1 = NC_045621.1 Primary Assembly 114725041 na scaffold_9_arrow_ctg1 assembled-molecule 9 Chromosome CM020576.1 = NC_045622.1 Primary Assembly 114096343 na scaffold_11_arrow_ctg1 assembled-molecule 10 Chromosome CM020577.1 = NC_045623.1 Primary Assembly 109748187 na scaffold_12_arrow_ctg1 assembled-molecule 11 Chromosome CM020578.1 = NC_045624.1 Primary Assembly 106878659 na scaffold_13_arrow_ctg1 assembled-molecule 12 Chromosome CM020579.1 = NC_045625.1 Primary Assembly 93615603 na Super_Scaffold_2 assembled-molecule 13 Chromosome CM020580.1 = NC_045626.1 Primary Assembly 92899309 na scaffold_14_arrow_ctg1 assembled-molecule 14 Chromosome CM020581.1 = NC_045627.1 Primary Assembly 92140016 na scaffold_15_arrow_ctg1 assembled-molecule 15 Chromosome CM020582.1 = NC_045628.1 Primary Assembly 86137365 na scaffold_16_arrow_ctg1 assembled-molecule 16 Chromosome CM020583.1 = NC_045629.1 Primary Assembly 85466132 na scaffold_18_arrow_ctg1 assembled-molecule 17 Chromosome CM020584.1 = NC_045630.1 Primary Assembly 70820203 na Super_Scaffold_3 assembled-molecule 18 Chromosome CM020585.1 = NC_045631.1 Primary Assembly 61922212 na scaffold_19_arrow_ctg1 assembled-molecule 19 Chromosome CM020586.1 = NC_045632.1 Primary Assembly 60724788 na scaffold_21_arrow_ctg1 assembled-molecule 20 Chromosome CM020587.1 = NC_045633.1 Primary Assembly 40208309 na scaffold_22_arrow_ctg1 assembled-molecule 21 Chromosome CM020588.1 = NC_045634.1 Primary Assembly 40207010 na scaffold_8_arrow_ctg1 assembled-molecule X Chromosome CM020589.1 = NC_045635.1 Primary Assembly 130149454 na Super_Scaffold_5 assembled-molecule Y Chromosome CM020590.1 = NC_045636.1 Primary Assembly 5451993 na scaffold_100_arrow_ctg1 unplaced-scaffold na na WNLY01000001.1 = NW_022476390.1 Primary Assembly 2428 na scaffold_101_arrow_ctg1 unplaced-scaffold na na WNLY01000002.1 = NW_022476391.1 Primary Assembly 1579 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WNLY01000003.1 = NW_022476392.1 Primary Assembly 1292 na scaffold_10_arrow_ctg1 unplaced-scaffold na na WNLY01000005.1 = NW_022476393.1 Primary Assembly 97967 na scaffold_17_arrow_ctg1 unplaced-scaffold na na WNLY01000013.1 = NW_022476394.1 Primary Assembly 136167 na scaffold_35_arrow_ctg1 unplaced-scaffold na na WNLY01000022.1 = NW_022476395.1 Primary Assembly 67730 na scaffold_36_arrow_ctg1 unplaced-scaffold na na WNLY01000023.1 = NW_022476396.1 Primary Assembly 250012 na scaffold_37_arrow_ctg1 unplaced-scaffold na na WNLY01000024.1 = NW_022476397.1 Primary Assembly 234124 na scaffold_38_arrow_ctg1 unplaced-scaffold na na WNLY01000025.1 = NW_022476398.1 Primary Assembly 230907 na scaffold_39_arrow_ctg1 unplaced-scaffold na na WNLY01000026.1 = NW_022476399.1 Primary Assembly 203576 na scaffold_40_arrow_ctg1 unplaced-scaffold na na WNLY01000028.1 = NW_022476400.1 Primary Assembly 161548 na scaffold_41_arrow_ctg1 unplaced-scaffold na na WNLY01000029.1 = NW_022476401.1 Primary Assembly 126576 na scaffold_42_arrow_ctg1 unplaced-scaffold na na WNLY01000030.1 = NW_022476402.1 Primary Assembly 109316 na scaffold_43_arrow_ctg1 unplaced-scaffold na na WNLY01000031.1 = NW_022476403.1 Primary Assembly 102079 na scaffold_44_arrow_ctg1 unplaced-scaffold na na WNLY01000032.1 = NW_022476404.1 Primary Assembly 95933 na scaffold_45_arrow_ctg1 unplaced-scaffold na na WNLY01000033.1 = NW_022476405.1 Primary Assembly 90466 na scaffold_46_arrow_ctg1 unplaced-scaffold na na WNLY01000034.1 = NW_022476406.1 Primary Assembly 86709 na scaffold_47_arrow_ctg1 unplaced-scaffold na na WNLY01000035.1 = NW_022476407.1 Primary Assembly 76666 na scaffold_48_arrow_ctg1 unplaced-scaffold na na WNLY01000036.1 = NW_022476408.1 Primary Assembly 72888 na scaffold_49_arrow_ctg1 unplaced-scaffold na na WNLY01000037.1 = NW_022476409.1 Primary Assembly 60824 na scaffold_50_arrow_ctg1 unplaced-scaffold na na WNLY01000039.1 = NW_022476410.1 Primary Assembly 60368 na scaffold_51_arrow_ctg1 unplaced-scaffold na na WNLY01000040.1 = NW_022476411.1 Primary Assembly 58870 na scaffold_52_arrow_ctg1 unplaced-scaffold na na WNLY01000041.1 = NW_022476412.1 Primary Assembly 51641 na scaffold_53_arrow_ctg1 unplaced-scaffold na na WNLY01000042.1 = NW_022476413.1 Primary Assembly 51552 na scaffold_54_arrow_ctg1 unplaced-scaffold na na WNLY01000043.1 = NW_022476414.1 Primary Assembly 50225 na scaffold_55_arrow_ctg1 unplaced-scaffold na na WNLY01000044.1 = NW_022476415.1 Primary Assembly 46404 na scaffold_56_arrow_ctg1 unplaced-scaffold na na WNLY01000045.1 = NW_022476416.1 Primary Assembly 45887 na scaffold_57_arrow_ctg1 unplaced-scaffold na na WNLY01000046.1 = NW_022476417.1 Primary Assembly 44325 na scaffold_58_arrow_ctg1 unplaced-scaffold na na WNLY01000047.1 = NW_022476418.1 Primary Assembly 43942 na scaffold_59_arrow_ctg1 unplaced-scaffold na na WNLY01000048.1 = NW_022476419.1 Primary Assembly 42138 na scaffold_60_arrow_ctg1 unplaced-scaffold na na WNLY01000050.1 = NW_022476420.1 Primary Assembly 41759 na scaffold_61_arrow_ctg1 unplaced-scaffold na na WNLY01000051.1 = NW_022476421.1 Primary Assembly 40219 na scaffold_62_arrow_ctg1 unplaced-scaffold na na WNLY01000052.1 = NW_022476422.1 Primary Assembly 39517 na scaffold_63_arrow_ctg1 unplaced-scaffold na na WNLY01000053.1 = NW_022476423.1 Primary Assembly 39477 na scaffold_64_arrow_ctg1 unplaced-scaffold na na WNLY01000054.1 = NW_022476424.1 Primary Assembly 38797 na scaffold_65_arrow_ctg1 unplaced-scaffold na na WNLY01000055.1 = NW_022476425.1 Primary Assembly 37746 na scaffold_66_arrow_ctg1 unplaced-scaffold na na WNLY01000056.1 = NW_022476426.1 Primary Assembly 37461 na scaffold_67_arrow_ctg1 unplaced-scaffold na na WNLY01000057.1 = NW_022476427.1 Primary Assembly 37157 na scaffold_68_arrow_ctg1 unplaced-scaffold na na WNLY01000058.1 = NW_022476428.1 Primary Assembly 36244 na scaffold_69_arrow_ctg1 unplaced-scaffold na na WNLY01000059.1 = NW_022476429.1 Primary Assembly 35151 na scaffold_70_arrow_ctg1 unplaced-scaffold na na WNLY01000061.1 = NW_022476430.1 Primary Assembly 33927 na scaffold_71_arrow_ctg1 unplaced-scaffold na na WNLY01000062.1 = NW_022476431.1 Primary Assembly 34247 na scaffold_72_arrow_ctg1 unplaced-scaffold na na WNLY01000063.1 = NW_022476432.1 Primary Assembly 31901 na scaffold_73_arrow_ctg1 unplaced-scaffold na na WNLY01000064.1 = NW_022476433.1 Primary Assembly 31722 na scaffold_74_arrow_ctg1 unplaced-scaffold na na WNLY01000065.1 = NW_022476434.1 Primary Assembly 30364 na scaffold_75_arrow_ctg1 unplaced-scaffold na na WNLY01000066.1 = NW_022476435.1 Primary Assembly 30175 na scaffold_76_arrow_ctg1 unplaced-scaffold na na WNLY01000067.1 = NW_022476436.1 Primary Assembly 26810 na scaffold_77_arrow_ctg1 unplaced-scaffold na na WNLY01000068.1 = NW_022476437.1 Primary Assembly 25133 na scaffold_78_arrow_ctg1 unplaced-scaffold na na WNLY01000069.1 = NW_022476438.1 Primary Assembly 24566 na scaffold_79_arrow_ctg1 unplaced-scaffold na na WNLY01000070.1 = NW_022476439.1 Primary Assembly 24609 na scaffold_80_arrow_ctg1 unplaced-scaffold na na WNLY01000072.1 = NW_022476440.1 Primary Assembly 22985 na scaffold_81_arrow_ctg1 unplaced-scaffold na na WNLY01000073.1 = NW_022476441.1 Primary Assembly 19374 na scaffold_82_arrow_ctg1 unplaced-scaffold na na WNLY01000074.1 = NW_022476442.1 Primary Assembly 17506 na scaffold_83_arrow_ctg1 unplaced-scaffold na na WNLY01000075.1 = NW_022476443.1 Primary Assembly 16668 na scaffold_84_arrow_ctg1 unplaced-scaffold na na WNLY01000076.1 = NW_022476444.1 Primary Assembly 15614 na scaffold_85_arrow_ctg1 unplaced-scaffold na na WNLY01000077.1 = NW_022476445.1 Primary Assembly 14623 na scaffold_86_arrow_ctg1 unplaced-scaffold na na WNLY01000078.1 = NW_022476446.1 Primary Assembly 13144 na scaffold_87_arrow_ctg1 unplaced-scaffold na na WNLY01000079.1 = NW_022476447.1 Primary Assembly 13129 na scaffold_88_arrow_ctg1 unplaced-scaffold na na WNLY01000080.1 = NW_022476448.1 Primary Assembly 13084 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WNLY01000081.1 = NW_022476449.1 Primary Assembly 12526 na scaffold_90_arrow_ctg1 unplaced-scaffold na na WNLY01000083.1 = NW_022476450.1 Primary Assembly 11485 na scaffold_91_arrow_ctg1 unplaced-scaffold na na WNLY01000084.1 = NW_022476451.1 Primary Assembly 9286 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WNLY01000085.1 = NW_022476452.1 Primary Assembly 7566 na scaffold_93_arrow_ctg1 unplaced-scaffold na na WNLY01000086.1 = NW_022476453.1 Primary Assembly 5458 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WNLY01000087.1 = NW_022476454.1 Primary Assembly 5001 na scaffold_95_arrow_ctg1 unplaced-scaffold na na WNLY01000088.1 = NW_022476455.1 Primary Assembly 4870 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WNLY01000089.1 = NW_022476456.1 Primary Assembly 3256 na scaffold_97_arrow_ctg1 unplaced-scaffold na na WNLY01000090.1 = NW_022476457.1 Primary Assembly 2806 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNLY01000091.1 = NW_022476458.1 Primary Assembly 2758 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WNLY01000092.1 = NW_022476459.1 Primary Assembly 2646 na MT assembled-molecule MT Mitochondrion na <> NC_025516.1 non-nuclear 16471 na mMusErm1_MT assembled-molecule MT Mitochondrion CM020617.1 <> na non-nuclear 16482 na