# Assembly name: bAytFul2.pri # Organism name: Aythya fuligula (tufted duck) # Isolate: bAytFul2 # Sex: female # Taxid: 219594 # BioSample: SAMN12621346 # BioProject: PRJNA561952 # Submitter: Vertebrate Genomes Project # Date: 2019-12-31 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNMM01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-09-20; VGP assembly pipeline individual v. 1.5 # Expected final version: no # Genome coverage: 64.03x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009819795.1 # RefSeq assembly accession: GCF_009819795.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_009819845.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009819815.1 GCF_009819815.1 Primary Assembly ## GCF_009910435.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_1 assembled-molecule 1 Chromosome CM020300.1 = NC_045559.1 Primary Assembly 207018403 na Super_scaffold_2 assembled-molecule 2 Chromosome CM020301.1 = NC_045560.1 Primary Assembly 159650012 na Super_scaffold_3 assembled-molecule 3 Chromosome CM020302.1 = NC_045561.1 Primary Assembly 119491689 na Super_scaffold_4 assembled-molecule 4 Chromosome CM020303.1 = NC_045562.1 Primary Assembly 76878203 na Super_scaffold_6 assembled-molecule 5 Chromosome CM020304.1 = NC_045563.1 Primary Assembly 65067180 na Super_scaffold_7 assembled-molecule 6 Chromosome CM020305.1 = NC_045564.1 Primary Assembly 39514636 na Super_scaffold_9 assembled-molecule 7 Chromosome CM020306.1 = NC_045565.1 Primary Assembly 37840942 na Super_scaffold_10 assembled-molecule 8 Chromosome CM020307.1 = NC_045566.1 Primary Assembly 32406295 na Super_scaffold_11 assembled-molecule 9 Chromosome CM020308.1 = NC_045567.1 Primary Assembly 26499672 na Super_scaffold_12 assembled-molecule 10 Chromosome CM020309.1 = NC_045568.1 Primary Assembly 22162769 na Super_scaffold_13 assembled-molecule 11 Chromosome CM020310.1 = NC_045569.1 Primary Assembly 21928510 na Super_scaffold_14 assembled-molecule 12 Chromosome CM020311.1 = NC_045570.1 Primary Assembly 21526058 na Super_scaffold_15 assembled-molecule 13 Chromosome CM020312.1 = NC_045571.1 Primary Assembly 21228795 na Super_scaffold_16 assembled-molecule 14 Chromosome CM020313.1 = NC_045572.1 Primary Assembly 19924658 na Super_scaffold_17 assembled-molecule 15 Chromosome CM020314.1 = NC_045573.1 Primary Assembly 17816505 na Super_scaffold_18 assembled-molecule 16 Chromosome CM020315.1 = NC_045574.1 Primary Assembly 16262610 na Super_scaffold_22 assembled-molecule 17 Chromosome CM020316.1 = NC_045575.1 Primary Assembly 15484054 na Super_scaffold_19 assembled-molecule 18 Chromosome CM020317.1 = NC_045576.1 Primary Assembly 12903739 na Super_scaffold_8 assembled-molecule 19 Chromosome CM020318.1 = NC_045577.1 Primary Assembly 11953284 na Super_scaffold_20 assembled-molecule 20 Chromosome CM020319.1 = NC_045578.1 Primary Assembly 11861279 na Super_scaffold_23 assembled-molecule 21 Chromosome CM020320.1 = NC_045579.1 Primary Assembly 8424528 na Super_scaffold_24 assembled-molecule 22 Chromosome CM020321.1 = NC_045580.1 Primary Assembly 7582326 na Super_scaffold_25 assembled-molecule 23 Chromosome CM020322.1 = NC_045581.1 Primary Assembly 7507630 na Super_scaffold_27 assembled-molecule 24 Chromosome CM020323.1 = NC_045582.1 Primary Assembly 6710917 na Super_scaffold_26 assembled-molecule 25 Chromosome CM020324.1 = NC_045583.1 Primary Assembly 6693931 na Super_scaffold_28 assembled-molecule 26 Chromosome CM020325.1 = NC_045584.1 Primary Assembly 5835185 na Super_scaffold_29 assembled-molecule 27 Chromosome CM020326.1 = NC_045585.1 Primary Assembly 5453253 na Super_scaffold_30 assembled-molecule 28 Chromosome CM020327.1 = NC_045586.1 Primary Assembly 3167070 na Super_scaffold_31 assembled-molecule 29 Chromosome CM020328.1 = NC_045587.1 Primary Assembly 2844608 na Super_scaffold_36 assembled-molecule 30 Chromosome CM020329.1 = NC_045588.1 Primary Assembly 1560659 na Super_scaffold_33 assembled-molecule 31 Chromosome CM020330.1 = NC_045589.1 Primary Assembly 1405878 na Super_scaffold_32 assembled-molecule 32 Chromosome CM020331.1 = NC_045590.1 Primary Assembly 1164621 na Super_scaffold_34 assembled-molecule 33 Chromosome CM020332.1 = NC_045591.1 Primary Assembly 983965 na Super_scaffold_35 assembled-molecule 34 Chromosome CM020333.1 = NC_045592.1 Primary Assembly 723082 na Super_scaffold_5 assembled-molecule Z Chromosome CM020334.1 = NC_045593.1 Primary Assembly 85905639 na Super_scaffold_21 assembled-molecule W Chromosome CM020335.1 = NC_045594.1 Primary Assembly 18736694 na scaffold_100_arrow_ctg1 unplaced-scaffold na na WNMM01000037.1 = NW_022473957.1 Primary Assembly 22640 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WNMM01000038.1 = NW_022473958.1 Primary Assembly 22305 na scaffold_104_arrow_ctg1 unplaced-scaffold na na WNMM01000039.1 = NW_022473959.1 Primary Assembly 20877 na scaffold_105_arrow_ctg1 unplaced-scaffold na na WNMM01000040.1 = NW_022473960.1 Primary Assembly 20061 na scaffold_107_arrow_ctg1 unplaced-scaffold na na WNMM01000041.1 = NW_022473961.1 Primary Assembly 18754 na scaffold_108_arrow_ctg1 unplaced-scaffold na na WNMM01000042.1 = NW_022473962.1 Primary Assembly 16575 na scaffold_109_arrow_ctg1 unplaced-scaffold na na WNMM01000043.1 = NW_022473963.1 Primary Assembly 16342 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WNMM01000044.1 = NW_022473964.1 Primary Assembly 15936 na scaffold_112_arrow_ctg1 unplaced-scaffold na na WNMM01000045.1 = NW_022473965.1 Primary Assembly 15474 na scaffold_113_arrow_ctg1 unplaced-scaffold na na WNMM01000046.1 = NW_022473966.1 Primary Assembly 14375 na scaffold_114_arrow_ctg1 unplaced-scaffold na na WNMM01000047.1 = NW_022473967.1 Primary Assembly 13881 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WNMM01000048.1 = NW_022473968.1 Primary Assembly 13775 na scaffold_116_arrow_ctg1 unplaced-scaffold na na WNMM01000049.1 = NW_022473969.1 Primary Assembly 13115 na scaffold_117_arrow_ctg1 unplaced-scaffold na na WNMM01000050.1 = NW_022473970.1 Primary Assembly 13079 na scaffold_118_arrow_ctg1 unplaced-scaffold na na WNMM01000051.1 = NW_022473971.1 Primary Assembly 11849 na scaffold_119_arrow_ctg1 unplaced-scaffold na na WNMM01000052.1 = NW_022473972.1 Primary Assembly 10592 na scaffold_120_arrow_ctg1 unplaced-scaffold na na WNMM01000053.1 = NW_022473973.1 Primary Assembly 11132 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNMM01000054.1 = NW_022473974.1 Primary Assembly 6672 na scaffold_122_arrow_ctg1 unplaced-scaffold na na WNMM01000055.1 = NW_022473975.1 Primary Assembly 5679 na scaffold_123_arrow_ctg1 unplaced-scaffold na na WNMM01000056.1 = NW_022473976.1 Primary Assembly 3261 na scaffold_124_arrow_ctg1 unplaced-scaffold na na WNMM01000057.1 = NW_022473977.1 Primary Assembly 2927 na scaffold_31_arrow_ctg1 unplaced-scaffold na na WNMM01000058.1 = NW_022473978.1 Primary Assembly 78149 na scaffold_31_arrow_ctg1_1 unplaced-scaffold na na WNMM01000059.1 = NW_022473979.1 Primary Assembly 132060 na scaffold_31_arrow_ctg1_2 unplaced-scaffold na na WNMM01000060.1 = NW_022473980.1 Primary Assembly 91880 na scaffold_31_arrow_ctg1_3 unplaced-scaffold na na WNMM01000061.1 = NW_022473981.1 Primary Assembly 142819 na scaffold_31_arrow_ctg1_4 unplaced-scaffold na na WNMM01000062.1 = NW_022473982.1 Primary Assembly 54200 na scaffold_31_arrow_ctg1_5 unplaced-scaffold na na WNMM01000063.1 = NW_022473983.1 Primary Assembly 131371 na scaffold_32_arrow_ctg1_1 unplaced-scaffold na na WNMM01000064.1 = NW_022473984.1 Primary Assembly 95564 na scaffold_37_arrow_ctg1_1 unplaced-scaffold na na WNMM01000065.1 = NW_022473986.1 Primary Assembly 109532 na scaffold_37_arrow_ctg1 unplaced-scaffold na na WNMM01000066.1 = NW_022473985.1 Primary Assembly 114173 na scaffold_40_arrow_ctg1 unplaced-scaffold na na WNMM01000067.1 = NW_022473987.1 Primary Assembly 102201 na scaffold_46_arrow_ctg1 unplaced-scaffold na na WNMM01000068.1 = NW_022473988.1 Primary Assembly 181274 na scaffold_46_arrow_ctg1_1 unplaced-scaffold na na WNMM01000069.1 = NW_022473989.1 Primary Assembly 164880 na scaffold_50_arrow_ctg1 unplaced-scaffold na na WNMM01000070.1 = NW_022473990.1 Primary Assembly 574735 na scaffold_52_arrow_ctg1 unplaced-scaffold na na WNMM01000071.1 = NW_022473991.1 Primary Assembly 410890 na scaffold_54_arrow_ctg1 unplaced-scaffold na na WNMM01000072.1 = NW_022473992.1 Primary Assembly 294789 na scaffold_57_arrow_ctg1 unplaced-scaffold na na WNMM01000073.1 = NW_022473993.1 Primary Assembly 145857 na scaffold_58_arrow_ctg1 unplaced-scaffold na na WNMM01000074.1 = NW_022473994.1 Primary Assembly 127236 na scaffold_60_arrow_ctg1 unplaced-scaffold na na WNMM01000075.1 = NW_022473995.1 Primary Assembly 125289 na scaffold_62_arrow_ctg1 unplaced-scaffold na na WNMM01000076.1 = NW_022473996.1 Primary Assembly 120298 na scaffold_63_arrow_ctg1 unplaced-scaffold na na WNMM01000077.1 = NW_022473997.1 Primary Assembly 103287 na scaffold_64_arrow_ctg1 unplaced-scaffold na na WNMM01000078.1 = NW_022473998.1 Primary Assembly 101783 na scaffold_65_arrow_ctg1 unplaced-scaffold na na WNMM01000079.1 = NW_022473999.1 Primary Assembly 98892 na scaffold_66_arrow_ctg1 unplaced-scaffold na na WNMM01000080.1 = NW_022474000.1 Primary Assembly 96175 na scaffold_68_arrow_ctg1 unplaced-scaffold na na WNMM01000081.1 = NW_022474001.1 Primary Assembly 75354 na scaffold_69_arrow_ctg1 unplaced-scaffold na na WNMM01000082.1 = NW_022474002.1 Primary Assembly 67040 na scaffold_70_arrow_ctg1 unplaced-scaffold na na WNMM01000083.1 = NW_022474003.1 Primary Assembly 63589 na scaffold_71_arrow_ctg1 unplaced-scaffold na na WNMM01000084.1 = NW_022474004.1 Primary Assembly 61510 na scaffold_72_arrow_ctg1 unplaced-scaffold na na WNMM01000085.1 = NW_022474005.1 Primary Assembly 51808 na scaffold_73_arrow_ctg1 unplaced-scaffold na na WNMM01000086.1 = NW_022474006.1 Primary Assembly 51487 na scaffold_75_arrow_ctg1 unplaced-scaffold na na WNMM01000087.1 = NW_022474007.1 Primary Assembly 49062 na scaffold_78_arrow_ctg1 unplaced-scaffold na na WNMM01000088.1 = NW_022474008.1 Primary Assembly 41558 na scaffold_79_arrow_ctg1 unplaced-scaffold na na WNMM01000089.1 = NW_022474009.1 Primary Assembly 41166 na scaffold_80_arrow_ctg1 unplaced-scaffold na na WNMM01000090.1 = NW_022474010.1 Primary Assembly 40665 na scaffold_81_arrow_ctg1 unplaced-scaffold na na WNMM01000091.1 = NW_022474011.1 Primary Assembly 40169 na scaffold_83_arrow_ctg1 unplaced-scaffold na na WNMM01000092.1 = NW_022474012.1 Primary Assembly 38698 na scaffold_84_arrow_ctg1 unplaced-scaffold na na WNMM01000093.1 = NW_022474013.1 Primary Assembly 38058 na scaffold_85_arrow_ctg1 unplaced-scaffold na na WNMM01000094.1 = NW_022474014.1 Primary Assembly 37509 na scaffold_87_arrow_ctg1 unplaced-scaffold na na WNMM01000095.1 = NW_022474015.1 Primary Assembly 36335 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WNMM01000096.1 = NW_022474016.1 Primary Assembly 34541 na scaffold_91_arrow_ctg1 unplaced-scaffold na na WNMM01000097.1 = NW_022474017.1 Primary Assembly 32799 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WNMM01000098.1 = NW_022474018.1 Primary Assembly 32395 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WNMM01000099.1 = NW_022474019.1 Primary Assembly 26160 na scaffold_95_arrow_ctg1 unplaced-scaffold na na WNMM01000100.1 = NW_022474020.1 Primary Assembly 24719 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WNMM01000101.1 = NW_022474021.1 Primary Assembly 24755 na scaffold_97_arrow_ctg1 unplaced-scaffold na na WNMM01000102.1 = NW_022474022.1 Primary Assembly 24599 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNMM01000103.1 = NW_022474023.1 Primary Assembly 24505 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WNMM01000104.1 = NW_022474024.1 Primary Assembly 23714 na MT assembled-molecule MT Mitochondrion na <> NC_024595.1 non-nuclear 16616 na