# Assembly name: fCycLum1.pri # Organism name: Cyclopterus lumpus (lumpfish) # Isolate: fCycLum1 # Sex: male # Taxid: 8103 # BioSample: SAMN12629502 # BioProject: PRJNA562003 # Submitter: Vertebrate Genomes Project # Date: 2019-12-23 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNNC01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. 51544-08-31; scaff10x v. 6.0.0.4784; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 2019-10-11; longranger align v. 2.2.2; freebayes # Expected final version: no # Genome coverage: 55.96x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009769545.1 # RefSeq assembly accession: GCF_009769545.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_009769515.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009769555.1 GCF_009769555.1 Primary Assembly ## GCA_009769565.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name S6 assembled-molecule 1 Chromosome CM020114.1 = NC_046966.1 Primary Assembly 27387776 na S25 assembled-molecule 2 Chromosome CM020115.1 = NC_046967.1 Primary Assembly 12788815 na S3 assembled-molecule 3 Chromosome CM020116.1 = NC_046968.1 Primary Assembly 31498552 na S4 assembled-molecule 4 Chromosome CM020117.1 = NC_046969.1 Primary Assembly 28177795 na S5 assembled-molecule 5 Chromosome CM020118.1 = NC_046970.1 Primary Assembly 28050196 na S2 assembled-molecule 6 Chromosome CM020119.1 = NC_046971.1 Primary Assembly 27064420 na S10 assembled-molecule 7 Chromosome CM020120.1 = NC_046972.1 Primary Assembly 26633010 na S15 assembled-molecule 8 Chromosome CM020121.1 = NC_046973.1 Primary Assembly 21980463 na S12 assembled-molecule 9 Chromosome CM020122.1 = NC_046974.1 Primary Assembly 27995395 na S7 assembled-molecule 10 Chromosome CM020123.1 = NC_046975.1 Primary Assembly 26151603 na S14 assembled-molecule 11 Chromosome CM020124.1 = NC_046976.1 Primary Assembly 22947575 na S17 assembled-molecule 12 Chromosome CM020125.1 = NC_046977.1 Primary Assembly 21746117 na S16 assembled-molecule 13 Chromosome CM020126.1 = NC_046978.1 Primary Assembly 21873678 na S11 assembled-molecule 14 Chromosome CM020127.1 = NC_046979.1 Primary Assembly 23863342 na S9 assembled-molecule 15 Chromosome CM020128.1 = NC_046980.1 Primary Assembly 25263199 na S23 assembled-molecule 16 Chromosome CM020129.1 = NC_046981.1 Primary Assembly 16278110 na S19 assembled-molecule 17 Chromosome CM020130.1 = NC_046982.1 Primary Assembly 23584696 na S22 assembled-molecule 18 Chromosome CM020131.1 = NC_046983.1 Primary Assembly 16667136 na S20 assembled-molecule 19 Chromosome CM020132.1 = NC_046984.1 Primary Assembly 19600944 na S18 assembled-molecule 20 Chromosome CM020133.1 = NC_046985.1 Primary Assembly 20970387 na S8 assembled-molecule 21 Chromosome CM020134.1 = NC_046986.1 Primary Assembly 25790955 na S13 assembled-molecule 22 Chromosome CM020135.1 = NC_046987.1 Primary Assembly 23786847 na S21 assembled-molecule 23 Chromosome CM020136.1 = NC_046988.1 Primary Assembly 17613290 na S1 assembled-molecule 24 Chromosome CM020137.1 = NC_046989.1 Primary Assembly 21858148 na S24 assembled-molecule 25 Chromosome CM020138.1 = NC_046990.1 Primary Assembly 12494197 na scaffold_101_arrow_ctg1 unplaced-scaffold na na WNNC01000026.1 = NW_022974907.1 Primary Assembly 21810 na scaffold_111_arrow_ctg1 unplaced-scaffold na na WNNC01000027.1 = NW_022974908.1 Primary Assembly 15028 na scaffold_114_arrow_ctg1 unplaced-scaffold na na WNNC01000028.1 = NW_022974909.1 Primary Assembly 11981 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WNNC01000029.1 = NW_022974910.1 Primary Assembly 11711 na scaffold_117_arrow_ctg1 unplaced-scaffold na na WNNC01000030.1 = NW_022974911.1 Primary Assembly 9345 na scaffold_118_arrow_ctg1 unplaced-scaffold na na WNNC01000031.1 = NW_022974912.1 Primary Assembly 7508 na scaffold_119_arrow_ctg1 unplaced-scaffold na na WNNC01000032.1 = NW_022974913.1 Primary Assembly 7369 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNNC01000033.1 = NW_022974914.1 Primary Assembly 2254 na scaffold_122_arrow_ctg1 unplaced-scaffold na na WNNC01000034.1 = NW_022974915.1 Primary Assembly 1528 na scaffold_41_arrow_ctg1 unplaced-scaffold na na WNNC01000035.1 = NW_022974916.1 Primary Assembly 143954 na scaffold_54_arrow_ctg1 unplaced-scaffold na na WNNC01000036.1 = NW_022974917.1 Primary Assembly 66930 na scaffold_55_arrow_ctg1 unplaced-scaffold na na WNNC01000037.1 = NW_022974918.1 Primary Assembly 66651 na scaffold_64_arrow_ctg1 unplaced-scaffold na na WNNC01000038.1 = NW_022974919.1 Primary Assembly 54573 na scaffold_67_arrow_ctg1 unplaced-scaffold na na WNNC01000039.1 = NW_022974920.1 Primary Assembly 53895 na scaffold_68_arrow_ctg1 unplaced-scaffold na na WNNC01000040.1 = NW_022974921.1 Primary Assembly 52054 na scaffold_70_arrow_ctg1 unplaced-scaffold na na WNNC01000041.1 = NW_022974922.1 Primary Assembly 50140 na scaffold_72_arrow_ctg1 unplaced-scaffold na na WNNC01000042.1 = NW_022974923.1 Primary Assembly 45200 na scaffold_82_arrow_ctg1 unplaced-scaffold na na WNNC01000043.1 = NW_022974924.1 Primary Assembly 37739 na scaffold_85_arrow_ctg1 unplaced-scaffold na na WNNC01000044.1 = NW_022974925.1 Primary Assembly 34723 na scaffold_86_arrow_ctg1 unplaced-scaffold na na WNNC01000045.1 = NW_022974926.1 Primary Assembly 34730 na scaffold_91_arrow_ctg1 unplaced-scaffold na na WNNC01000046.1 = NW_022974927.1 Primary Assembly 32678 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WNNC01000047.1 = NW_022974928.1 Primary Assembly 31310 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNNC01000048.1 = NW_022974929.1 Primary Assembly 25838 na fCycLum1_MT assembled-molecule MT Mitochondrion CM020140.1 <> na non-nuclear 17282 na