# Assembly name: bCorMon1.pri # Organism name: Corvus moneduloides (New Caledonian crow) # Isolate: bCorMon1 # Sex: female # Taxid: 1196302 # BioSample: SAMN12368441 # BioProject: PRJNA560983 # Submitter: Vertebrate Genomes Project # Date: 2019-11-14 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WHPO01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip + Arrow v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Bionano solve v. 3.2.1_04122018; Salsa HiC v. 2.2; Arrow polishing + gap filling v. SMRTlink_6.0.0.47841; longranger alignment v # Expected final version: no # Genome coverage: 62.08x # Sequencing technology: PacBio Sequel I; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009650955.1 # RefSeq assembly accession: GCF_009650955.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_009651025.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009651085.1 GCF_009651085.1 Primary Assembly ## GCA_009651095.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_scaffold_6_arrow_ctg1 assembled-molecule 1 Chromosome CM018807.1 = NC_045476.1 Primary Assembly 165740467 na SUPER_scaffold_1_arrow_ctg1 assembled-molecule 2 Chromosome CM018808.1 = NC_045477.1 Primary Assembly 123340174 na SUPER_scaffold_2_arrow_ctg1 assembled-molecule 3 Chromosome CM018809.1 = NC_045478.1 Primary Assembly 122098567 na SUPER_scaffold_3_arrow_ctg1 assembled-molecule 4 Chromosome CM018810.1 = NC_045479.1 Primary Assembly 74699841 na SUPER_scaffold_8_arrow_ctg1 assembled-molecule 5 Chromosome CM018811.1 = NC_045480.1 Primary Assembly 74461389 na SUPER_scaffold_4_arrow_ctg1 assembled-molecule 6 Chromosome CM018812.1 = NC_045481.1 Primary Assembly 63805600 na SUPER_scaffold_12_arrow_ctg1 assembled-molecule 7 Chromosome CM018813.1 = NC_045482.1 Primary Assembly 39609540 na SUPER_scaffold_11_arrow_ctg1 assembled-molecule 8 Chromosome CM018814.1 = NC_045483.1 Primary Assembly 37231433 na SUPER_scaffold_9_arrow_ctg1 assembled-molecule 9 Chromosome CM018815.1 = NC_045484.1 Primary Assembly 32877830 na SUPER_scaffold_10_arrow_ctg1 assembled-molecule 10 Chromosome CM018816.1 = NC_045485.1 Primary Assembly 28582475 na SUPER_scaffold_14_arrow_ctg1 assembled-molecule 11 Chromosome CM018817.1 = NC_045486.1 Primary Assembly 21791607 na SUPER_scaffold_13_arrow_ctg1 assembled-molecule 12 Chromosome CM018818.1 = NC_045487.1 Primary Assembly 21200103 na SUPER_scaffold_15_arrow_ctg1 assembled-molecule 13 Chromosome CM018819.1 = NC_045488.1 Primary Assembly 20922009 na SUPER_scaffold_21_arrow_ctg1 assembled-molecule 14 Chromosome CM018820.1 = NC_045489.1 Primary Assembly 20680512 na SUPER_scaffold_22_arrow_ctg1 assembled-molecule 15 Chromosome CM018821.1 = NC_045490.1 Primary Assembly 19370643 na SUPER_scaffold_18_arrow_ctg1 assembled-molecule 16 Chromosome CM018822.1 = NC_045491.1 Primary Assembly 17823271 na SUPER_scaffold_160_arrow_ctg1 assembled-molecule 17 Chromosome CM018823.1 = NC_045492.1 Primary Assembly 15784260 na SUPER_scaffold_17_arrow_ctg1 assembled-molecule 18 Chromosome CM018824.1 = NC_045493.1 Primary Assembly 14829806 na SUPER_scaffold_36_arrow_ctg1 assembled-molecule 19 Chromosome CM018825.1 = NC_045494.1 Primary Assembly 12479413 na SUPER_scaffold_24_arrow_ctg1 assembled-molecule 20 Chromosome CM018826.1 = NC_045495.1 Primary Assembly 11258830 na SUPER_scaffold_25_arrow_ctg1 assembled-molecule 21 Chromosome CM018827.1 = NC_045496.1 Primary Assembly 11163919 na SUPER_scaffold_39_arrow_ctg1 assembled-molecule 22 Chromosome CM018828.1 = NC_045497.1 Primary Assembly 8050423 na SUPER_scaffold_33_arrow_ctg1 assembled-molecule 23 Chromosome CM018829.1 = NC_045498.1 Primary Assembly 7320952 na SUPER_scaffold_34_arrow_ctg1 assembled-molecule 24 Chromosome CM018830.1 = NC_045499.1 Primary Assembly 7308453 na SUPER_scaffold_35_arrow_ctg1 assembled-molecule 25 Chromosome CM018831.1 = NC_045500.1 Primary Assembly 6846114 na SUPER_scaffold_48_arrow_ctg1 assembled-molecule 26 Chromosome CM018832.1 = NC_045501.1 Primary Assembly 6151477 na SUPER_scaffold_41_arrow_ctg1 assembled-molecule 27 Chromosome CM018833.1 = NC_045502.1 Primary Assembly 5850513 na SUPER_scaffold_100_arrow_ctg1 assembled-molecule 28 Chromosome CM018834.1 = NC_045503.1 Primary Assembly 5795124 na SUPER_scaffold_55_arrow_ctg1 assembled-molecule 29 Chromosome CM018835.1 = NC_045504.1 Primary Assembly 3332324 na SUPER_scaffold_58_arrow_ctg1 assembled-molecule 30 Chromosome CM018836.1 = NC_045505.1 Primary Assembly 2735592 na SUPER_scaffold_71_arrow_ctg1 assembled-molecule 31 Chromosome CM018837.1 = NC_045506.1 Primary Assembly 1421766 na SUPER_scaffold_90_arrow_ctg1 assembled-molecule 32 Chromosome CM018838.1 = NC_045507.1 Primary Assembly 1184810 na SUPER_scaffold_80_arrow_ctg1 assembled-molecule 33 Chromosome CM018839.1 = NC_045508.1 Primary Assembly 1156330 na SUPER_scaffold_82_arrow_ctg1 assembled-molecule 34 Chromosome CM018840.1 = NC_045509.1 Primary Assembly 1064302 na SUPER_scaffold_16_arrow_ctg1 assembled-molecule W Chromosome CM018842.1 = NC_045510.1 Primary Assembly 21203907 na SUPER_scaffold_5_arrow_ctg1 assembled-molecule Z Chromosome CM018841.1 = NC_045511.1 Primary Assembly 77816073 na SUPER_scaffold_79_arrow_ctg1 unplaced-scaffold na na WHPO01000034.1 = NW_022436872.1 Primary Assembly 491886 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WHPO01000038.1 = NW_022436937.1 Primary Assembly 731315 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WHPO01000039.1 = NW_022436938.1 Primary Assembly 299843 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WHPO01000040.1 = NW_022436939.1 Primary Assembly 257524 na scaffold_9_arrow_ctg1 unplaced-scaffold na na WHPO01000041.1 = NW_022436940.1 Primary Assembly 357944 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WHPO01000042.1 = NW_022436873.1 Primary Assembly 236333 na scaffold_63_arrow_ctg1 unplaced-scaffold na na WHPO01000043.1 = NW_022436935.1 Primary Assembly 281132 na scaffold_79_arrow_ctg1 unplaced-scaffold na na WHPO01000044.1 = NW_022436936.1 Primary Assembly 121934 na scaffold_104_arrow_ctg1 unplaced-scaffold na na WHPO01000045.1 = NW_022436874.1 Primary Assembly 233436 na scaffold_106_arrow_ctg1 unplaced-scaffold na na WHPO01000046.1 = NW_022436875.1 Primary Assembly 208299 na scaffold_109_arrow_ctg1 unplaced-scaffold na na WHPO01000047.1 = NW_022436876.1 Primary Assembly 169415 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WHPO01000048.1 = NW_022436877.1 Primary Assembly 163736 na scaffold_111_arrow_ctg1 unplaced-scaffold na na WHPO01000049.1 = NW_022436878.1 Primary Assembly 152246 na scaffold_114_arrow_ctg1 unplaced-scaffold na na WHPO01000050.1 = NW_022436879.1 Primary Assembly 145865 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WHPO01000051.1 = NW_022436880.1 Primary Assembly 145028 na scaffold_116_arrow_ctg1 unplaced-scaffold na na WHPO01000052.1 = NW_022436881.1 Primary Assembly 136298 na scaffold_118_arrow_ctg1 unplaced-scaffold na na WHPO01000053.1 = NW_022436882.1 Primary Assembly 112326 na scaffold_124_arrow_ctg1 unplaced-scaffold na na WHPO01000054.1 = NW_022436883.1 Primary Assembly 94345 na scaffold_126_arrow_ctg1 unplaced-scaffold na na WHPO01000055.1 = NW_022436884.1 Primary Assembly 76014 na scaffold_127_arrow_ctg1 unplaced-scaffold na na WHPO01000056.1 = NW_022436885.1 Primary Assembly 74117 na scaffold_129_arrow_ctg1 unplaced-scaffold na na WHPO01000057.1 = NW_022436886.1 Primary Assembly 71914 na scaffold_133_arrow_ctg1 unplaced-scaffold na na WHPO01000058.1 = NW_022436887.1 Primary Assembly 66668 na scaffold_134_arrow_ctg1 unplaced-scaffold na na WHPO01000059.1 = NW_022436888.1 Primary Assembly 65715 na scaffold_136_arrow_ctg1 unplaced-scaffold na na WHPO01000060.1 = NW_022436889.1 Primary Assembly 60464 na scaffold_138_arrow_ctg1 unplaced-scaffold na na WHPO01000061.1 = NW_022436890.1 Primary Assembly 60406 na scaffold_140_arrow_ctg1 unplaced-scaffold na na WHPO01000062.1 = NW_022436891.1 Primary Assembly 57330 na scaffold_142_arrow_ctg1 unplaced-scaffold na na WHPO01000063.1 = NW_022436892.1 Primary Assembly 52982 na scaffold_143_arrow_ctg1 unplaced-scaffold na na WHPO01000064.1 = NW_022436893.1 Primary Assembly 51725 na scaffold_144_arrow_ctg1 unplaced-scaffold na na WHPO01000065.1 = NW_022436894.1 Primary Assembly 50156 na scaffold_146_arrow_ctg1 unplaced-scaffold na na WHPO01000066.1 = NW_022436895.1 Primary Assembly 41219 na scaffold_147_arrow_ctg1 unplaced-scaffold na na WHPO01000067.1 = NW_022436896.1 Primary Assembly 39145 na scaffold_148_arrow_ctg1 unplaced-scaffold na na WHPO01000068.1 = NW_022436897.1 Primary Assembly 38868 na scaffold_152_arrow_ctg1 unplaced-scaffold na na WHPO01000069.1 = NW_022436898.1 Primary Assembly 31553 na scaffold_153_arrow_ctg1 unplaced-scaffold na na WHPO01000070.1 = NW_022436899.1 Primary Assembly 31357 na scaffold_154_arrow_ctg1 unplaced-scaffold na na WHPO01000071.1 = NW_022436900.1 Primary Assembly 30817 na scaffold_155_arrow_ctg1 unplaced-scaffold na na WHPO01000072.1 = NW_022436901.1 Primary Assembly 30422 na scaffold_157_arrow_ctg1 unplaced-scaffold na na WHPO01000073.1 = NW_022436902.1 Primary Assembly 27921 na scaffold_159_arrow_ctg1 unplaced-scaffold na na WHPO01000074.1 = NW_022436903.1 Primary Assembly 26991 na scaffold_160_arrow_ctg1 unplaced-scaffold na na WHPO01000075.1 = NW_022436904.1 Primary Assembly 25784 na scaffold_161_arrow_ctg1 unplaced-scaffold na na WHPO01000076.1 = NW_022436905.1 Primary Assembly 25779 na scaffold_163_arrow_ctg1 unplaced-scaffold na na WHPO01000077.1 = NW_022436906.1 Primary Assembly 24147 na scaffold_164_arrow_ctg1 unplaced-scaffold na na WHPO01000078.1 = NW_022436907.1 Primary Assembly 23939 na scaffold_165_arrow_ctg1 unplaced-scaffold na na WHPO01000079.1 = NW_022436908.1 Primary Assembly 23372 na scaffold_166_arrow_ctg1 unplaced-scaffold na na WHPO01000080.1 = NW_022436909.1 Primary Assembly 22711 na scaffold_167_arrow_ctg1 unplaced-scaffold na na WHPO01000081.1 = NW_022436910.1 Primary Assembly 22365 na scaffold_170_arrow_ctg1 unplaced-scaffold na na WHPO01000082.1 = NW_022436911.1 Primary Assembly 18187 na scaffold_171_arrow_ctg1 unplaced-scaffold na na WHPO01000083.1 = NW_022436912.1 Primary Assembly 17906 na scaffold_172_arrow_ctg1 unplaced-scaffold na na WHPO01000084.1 = NW_022436913.1 Primary Assembly 17357 na scaffold_173_arrow_ctg1 unplaced-scaffold na na WHPO01000085.1 = NW_022436914.1 Primary Assembly 16988 na scaffold_174_arrow_ctg1 unplaced-scaffold na na WHPO01000086.1 = NW_022436915.1 Primary Assembly 16847 na scaffold_178_arrow_ctg1 unplaced-scaffold na na WHPO01000087.1 = NW_022436916.1 Primary Assembly 15886 na scaffold_179_arrow_ctg1 unplaced-scaffold na na WHPO01000088.1 = NW_022436917.1 Primary Assembly 15100 na scaffold_180_arrow_ctg1 unplaced-scaffold na na WHPO01000089.1 = NW_022436918.1 Primary Assembly 14282 na scaffold_181_arrow_ctg1 unplaced-scaffold na na WHPO01000090.1 = NW_022436919.1 Primary Assembly 13122 na scaffold_182_arrow_ctg1 unplaced-scaffold na na WHPO01000091.1 = NW_022436920.1 Primary Assembly 12499 na scaffold_183_arrow_ctg1 unplaced-scaffold na na WHPO01000092.1 = NW_022436921.1 Primary Assembly 11692 na scaffold_184_arrow_ctg1 unplaced-scaffold na na WHPO01000093.1 = NW_022436922.1 Primary Assembly 9374 na scaffold_185_arrow_ctg1 unplaced-scaffold na na WHPO01000094.1 = NW_022436923.1 Primary Assembly 8669 na scaffold_186_arrow_ctg1 unplaced-scaffold na na WHPO01000095.1 = NW_022436924.1 Primary Assembly 8276 na scaffold_187_arrow_ctg1 unplaced-scaffold na na WHPO01000096.1 = NW_022436925.1 Primary Assembly 7983 na scaffold_188_arrow_ctg1 unplaced-scaffold na na WHPO01000097.1 = NW_022436926.1 Primary Assembly 7390 na scaffold_189_arrow_ctg1 unplaced-scaffold na na WHPO01000098.1 = NW_022436927.1 Primary Assembly 6903 na scaffold_190_arrow_ctg1 unplaced-scaffold na na WHPO01000099.1 = NW_022436928.1 Primary Assembly 6285 na scaffold_191_arrow_ctg1 unplaced-scaffold na na WHPO01000100.1 = NW_022436929.1 Primary Assembly 6054 na scaffold_192_arrow_ctg1 unplaced-scaffold na na WHPO01000101.1 = NW_022436930.1 Primary Assembly 5686 na scaffold_193_arrow_ctg1 unplaced-scaffold na na WHPO01000102.1 = NW_022436931.1 Primary Assembly 4961 na scaffold_194_arrow_ctg1 unplaced-scaffold na na WHPO01000103.1 = NW_022436932.1 Primary Assembly 4071 na scaffold_195_arrow_ctg1 unplaced-scaffold na na WHPO01000104.1 = NW_022436933.1 Primary Assembly 3724 na scaffold_196_arrow_ctg1 unplaced-scaffold na na WHPO01000105.1 = NW_022436934.1 Primary Assembly 2217 na bCorMon1_MT assembled-molecule MT Mitochondrion CM018859.1 <> na non-nuclear 16895 na