# Assembly name: mLynCan4.pri.v2 # Organism name: Lynx canadensis (Canada lynx) # Isolate: LIC74 # Sex: male # Taxid: 61383 # BioSample: SAMN09948483 # BioProject: PRJNA489107 # Submitter: Vertebrate Genomes Project # Date: 2020-07-14 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VHLE02 # Assembly method: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano Solve 2 enzyme v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2020-04-03; VGP s # Expected final version: no # Genome coverage: 72.0x # Sequencing technology: PacBio Sequel I; 10X genome; Bionano Genomics; Arima Genomics Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_007474595.2 # RefSeq assembly accession: GCF_007474595.2 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_007474575.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_007474685.2 GCF_007474685.2 Primary Assembly ## GCA_007474695.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_Scaffold_1 assembled-molecule A1 Chromosome CM017329.2 = NC_044303.2 Primary Assembly 240012660 na Super_Scaffold_5 assembled-molecule A2 Chromosome CM017330.2 = NC_044304.2 Primary Assembly 168988343 na Super_Scaffold_9 assembled-molecule A3 Chromosome CM017331.1 = NC_044305.1 Primary Assembly 139831168 na scaffold_2_arrow_ctg1 assembled-molecule B1 Chromosome CM017332.2 = NC_044306.2 Primary Assembly 205934466 na Super_Scaffold_3 assembled-molecule B2 Chromosome CM017333.1 = NC_044307.1 Primary Assembly 152753185 na Super_Scaffold_2 assembled-molecule B3 Chromosome CM017334.2 = NC_044308.2 Primary Assembly 147275701 na Super_Scaffold_13 assembled-molecule B4 Chromosome CM017335.1 = NC_044309.1 Primary Assembly 141311636 na Super_Scaffold_4 assembled-molecule C1 Chromosome CM017336.1 = NC_044310.1 Primary Assembly 220954660 na Super_Scaffold_12 assembled-molecule C2 Chromosome CM017337.2 = NC_044311.2 Primary Assembly 158927374 na Super_Scaffold_14 assembled-molecule D1 Chromosome CM017338.2 = NC_044312.2 Primary Assembly 115715915 na scaffold_11_arrow_ctg1 assembled-molecule D2 Chromosome CM017339.2 = NC_044313.2 Primary Assembly 87252839 na Super_Scaffold_6 assembled-molecule D3 Chromosome CM017340.2 = NC_044314.2 Primary Assembly 93546183 na Super_Scaffold_8 assembled-molecule D4 Chromosome CM017341.2 = NC_044315.2 Primary Assembly 94005490 na scaffold_18_arrow_ctg1 assembled-molecule E1 Chromosome CM017342.2 = NC_044316.2 Primary Assembly 60670153 na Super_Scaffold_11 assembled-molecule E2 Chromosome CM017343.1 = NC_044317.1 Primary Assembly 61563313 na scaffold_21_arrow_ctg1 assembled-molecule E3 Chromosome CM017344.1 = NC_044318.1 Primary Assembly 41050830 na scaffold_17_arrow_ctg1 assembled-molecule F1 Chromosome CM017345.2 = NC_044319.2 Primary Assembly 69073222 na Super_Scaffold_7 assembled-molecule F2 Chromosome CM017346.2 = NC_044320.2 Primary Assembly 83270606 na Super_Scaffold_10 assembled-molecule X Chromosome CM017347.2 = NC_044321.2 Primary Assembly 122536723 na Super_Scaffold_15 assembled-molecule Y Chromosome CM023961.1 = NC_050200.1 Primary Assembly 1924741 na scaffold_62_arrow_ctg1 unlocalized-scaffold Y Chromosome VHLE02000025.1 = NW_023397569.1 Primary Assembly 48158 na scaffold_70_arrow_ctg1 unlocalized-scaffold Y Chromosome VHLE02000033.1 = NW_023397570.1 Primary Assembly 31503 na scaffold_84_arrow_ctg1 unlocalized-scaffold Y Chromosome VHLE02000046.1 = NW_023397571.1 Primary Assembly 22828 na scaffold_89_arrow_ctg1 unlocalized-scaffold Y Chromosome VHLE02000051.1 = NW_023397572.1 Primary Assembly 21498 na scaffold_18_arrow_ctg1_1 unplaced-scaffold na na VHLE02000008.1 = NW_023397573.1 Primary Assembly 62198 na scaffold_52_arrow_ctg1 unplaced-scaffold na na VHLE02000017.1 = NW_023397574.1 Primary Assembly 72670 na scaffold_53_arrow_ctg1 unplaced-scaffold na na VHLE02000018.1 = NW_023397575.1 Primary Assembly 67592 na scaffold_54_arrow_ctg1 unplaced-scaffold na na VHLE02000019.1 = NW_023397576.1 Primary Assembly 68325 na scaffold_57_arrow_ctg1 unplaced-scaffold na na VHLE02000020.1 = NW_023397577.1 Primary Assembly 54009 na scaffold_58_arrow_ctg1 unplaced-scaffold na na VHLE02000021.1 = NW_023397578.1 Primary Assembly 51901 na scaffold_59_arrow_ctg1 unplaced-scaffold na na VHLE02000022.1 = NW_023397579.1 Primary Assembly 51687 na scaffold_61_arrow_ctg1 unplaced-scaffold na na VHLE02000024.1 = NW_023397580.1 Primary Assembly 49735 na scaffold_64_arrow_ctg1 unplaced-scaffold na na VHLE02000026.1 = NW_023397581.1 Primary Assembly 41772 na scaffold_65_arrow_ctg1 unplaced-scaffold na na VHLE02000027.1 = NW_023397582.1 Primary Assembly 39736 na scaffold_66_arrow_ctg1 unplaced-scaffold na na VHLE02000028.1 = NW_023397583.1 Primary Assembly 38278 na scaffold_67_arrow_ctg1 unplaced-scaffold na na VHLE02000029.1 = NW_023397584.1 Primary Assembly 35960 na scaffold_68_arrow_ctg1 unplaced-scaffold na na VHLE02000030.1 = NW_023397585.1 Primary Assembly 33107 na scaffold_69_arrow_ctg1 unplaced-scaffold na na VHLE02000031.1 = NW_023397586.1 Primary Assembly 31671 na scaffold_73_arrow_ctg1 unplaced-scaffold na na VHLE02000034.1 = NW_023397587.1 Primary Assembly 28874 na scaffold_74_arrow_ctg1 unplaced-scaffold na na VHLE02000035.1 = NW_023397588.1 Primary Assembly 27850 na scaffold_75_arrow_ctg1 unplaced-scaffold na na VHLE02000036.1 = NW_023397589.1 Primary Assembly 26426 na scaffold_76_arrow_ctg1 unplaced-scaffold na na VHLE02000037.1 = NW_023397590.1 Primary Assembly 25287 na scaffold_77_arrow_ctg1 unplaced-scaffold na na VHLE02000038.1 = NW_023397591.1 Primary Assembly 25318 na scaffold_78_arrow_ctg1 unplaced-scaffold na na VHLE02000039.1 = NW_023397592.1 Primary Assembly 24574 na scaffold_79_arrow_ctg1 unplaced-scaffold na na VHLE02000040.1 = NW_023397593.1 Primary Assembly 24566 na scaffold_80_arrow_ctg1 unplaced-scaffold na na VHLE02000042.1 = NW_023397594.1 Primary Assembly 24262 na scaffold_81_arrow_ctg1 unplaced-scaffold na na VHLE02000043.1 = NW_023397595.1 Primary Assembly 24174 na scaffold_82_arrow_ctg1 unplaced-scaffold na na VHLE02000044.1 = NW_023397596.1 Primary Assembly 23762 na scaffold_83_arrow_ctg1 unplaced-scaffold na na VHLE02000045.1 = NW_023397597.1 Primary Assembly 23100 na scaffold_85_arrow_ctg1 unplaced-scaffold na na VHLE02000047.1 = NW_023397598.1 Primary Assembly 22736 na scaffold_86_arrow_ctg1 unplaced-scaffold na na VHLE02000048.1 = NW_023397599.1 Primary Assembly 22512 na scaffold_87_arrow_ctg1 unplaced-scaffold na na VHLE02000049.1 = NW_023397600.1 Primary Assembly 22129 na scaffold_88_arrow_ctg1 unplaced-scaffold na na VHLE02000050.1 = NW_023397601.1 Primary Assembly 21928 na scaffold_90_arrow_ctg1 unplaced-scaffold na na VHLE02000053.1 = NW_023397602.1 Primary Assembly 20921 na mLynCan4_MT assembled-molecule MT Mitochondrion CM017348.2 <> na non-nuclear 17044 na