RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.6pSNG6/RM_31023.ThuOct100757502024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1728572268
Database = /dev/shm/rModeler.6pSNG6/GCF_006384225.1_ASM638422v1   - Sequences = 25
  - Bases = 7010185
Storage Throughput = excellent ( 1067.22 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 7010100 bp ( 6931336 non ambiguous )
   - Num Contigs Represented = 25
   - Sequence extraction : 00:00:03 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:04:04 (hh:mm:ss) Elapsed Time
Round Time: 00:04:33 (hh:mm:ss) Elapsed Time : 8 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:08 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       315 repeats masked totaling 64937 bp(s).
   - TE Masking time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 7010100 bp
       Num Contigs Represented = 25
       Non ambiguous bp:
             Initial: 6931336 bp
             After Masking: 6861520 bp
             Masked: 1.01 % 
 -- Input Database Coverage: 7010100 bp out of 7010185 bp ( 100.00 % )
Sampling Time: 00:00:14 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 18528
Comparison Time: 00:04:52 (hh:mm:ss) Elapsed Time, 6883 HSPs Collected
Number of families returned by RECON: 1294
Round Time: 00:05:24 (hh:mm:ss) Elapsed Time : 2 families discovered.

RepeatScout/RECON discovery complete: 10 families found


Classification Time: 00:00:10 (hh:mm:ss) Elapsed Time


Program Time: 00:10:07 (hh:mm:ss) Elapsed Time