# Assembly name: Jm3101_v1.0 # Organism name: Juglans microcarpa x Juglans regia (eudicots) # Isolate: MS1-56 # Taxid: 2249226 # BioSample: SAMN09474938 # BioProject: PRJNA529253 # Submitter: University of California, Davis # Date: 2019-04-16 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: QKZX01 # Assembly method: FALCON v. 0.4.2 # Expected final version: no # Genome coverage: 47x # Sequencing technology: PacBio # RefSeq category: Representative Genome # GenBank assembly accession: GCA_004785595.1 # RefSeq assembly accession: GCF_004785595.1 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_004785585.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_004785615.1 GCF_004785615.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Jm1D assembled-molecule 1D Chromosome CM015633.1 = NC_054594.1 Primary Assembly 49856174 na Jm1S assembled-molecule 1S Chromosome CM015634.1 = NC_054595.1 Primary Assembly 30169828 na Jm2D assembled-molecule 2D Chromosome CM015635.1 = NC_054596.1 Primary Assembly 43614719 na Jm2S assembled-molecule 2S Chromosome CM015636.1 = NC_054597.1 Primary Assembly 34707362 na Jm3D assembled-molecule 3D Chromosome CM015637.1 = NC_054598.1 Primary Assembly 39900371 na Jm3S assembled-molecule 3S Chromosome CM015638.1 = NC_054599.1 Primary Assembly 27832763 na Jm4D assembled-molecule 4D Chromosome CM015639.1 = NC_054600.1 Primary Assembly 35629462 na Jm4S assembled-molecule 4S Chromosome CM015640.1 = NC_054601.1 Primary Assembly 27577207 na Jm5D assembled-molecule 5D Chromosome CM015641.1 = NC_054602.1 Primary Assembly 35798223 na Jm5S assembled-molecule 5S Chromosome CM015642.1 = NC_054603.1 Primary Assembly 32113326 na Jm6D assembled-molecule 6D Chromosome CM015643.1 = NC_054604.1 Primary Assembly 38364907 na Jm6S assembled-molecule 6S Chromosome CM015644.1 = NC_054605.1 Primary Assembly 22373256 na Jm7D assembled-molecule 7D Chromosome CM015645.1 = NC_054606.1 Primary Assembly 26765518 na Jm7S assembled-molecule 7S Chromosome CM015646.1 = NC_054607.1 Primary Assembly 21889424 na Jm8D assembled-molecule 8D Chromosome CM015647.1 = NC_054608.1 Primary Assembly 36225362 na Jm8S assembled-molecule 8S Chromosome CM015648.1 = NC_054609.1 Primary Assembly 19962766 na JmScfU0001 unplaced-scaffold na na QKZX01000017.1 = NW_024475745.1 Primary Assembly 1155875 na JmScfU0002 unplaced-scaffold na na QKZX01000018.1 = NW_024475746.1 Primary Assembly 176421 na JmScfU0003 unplaced-scaffold na na QKZX01000019.1 = NW_024475747.1 Primary Assembly 134876 na JmScfU0004 unplaced-scaffold na na QKZX01000020.1 = NW_024475748.1 Primary Assembly 124290 na JmScfU0005 unplaced-scaffold na na QKZX01000021.1 = NW_024475749.1 Primary Assembly 86458 na JmScfU0006 unplaced-scaffold na na QKZX01000022.1 = NW_024475750.1 Primary Assembly 85188 na JmScfU0007 unplaced-scaffold na na QKZX01000023.1 = NW_024475751.1 Primary Assembly 77901 na JmScfU0008 unplaced-scaffold na na QKZX01000024.1 = NW_024475752.1 Primary Assembly 74832 na JmScfU0009 unplaced-scaffold na na QKZX01000025.1 = NW_024475753.1 Primary Assembly 71496 na JmScfU0010 unplaced-scaffold na na QKZX01000026.1 = NW_024475754.1 Primary Assembly 61458 na JmScfU0011 unplaced-scaffold na na QKZX01000027.1 = NW_024475755.1 Primary Assembly 57292 na JmScfU0012 unplaced-scaffold na na QKZX01000028.1 = NW_024475756.1 Primary Assembly 56525 na JmScfU0013 unplaced-scaffold na na QKZX01000029.1 = NW_024475757.1 Primary Assembly 55453 na JmScfU0014 unplaced-scaffold na na QKZX01000030.1 = NW_024475758.1 Primary Assembly 54595 na JmScfU0015 unplaced-scaffold na na QKZX01000031.1 = NW_024475759.1 Primary Assembly 53110 na JmScfU0016 unplaced-scaffold na na QKZX01000032.1 = NW_024475760.1 Primary Assembly 52495 na JmScfU0017 unplaced-scaffold na na QKZX01000033.1 = NW_024475761.1 Primary Assembly 51833 na JmScfU0018 unplaced-scaffold na na QKZX01000034.1 = NW_024475762.1 Primary Assembly 50570 na JmScfU0019 unplaced-scaffold na na QKZX01000035.1 = NW_024475763.1 Primary Assembly 49908 na JmScfU0020 unplaced-scaffold na na QKZX01000036.1 = NW_024475764.1 Primary Assembly 46982 na JmScfU0021 unplaced-scaffold na na QKZX01000037.1 = NW_024475765.1 Primary Assembly 46494 na JmScfU0022 unplaced-scaffold na na QKZX01000038.1 = NW_024475766.1 Primary Assembly 46368 na JmScfU0023 unplaced-scaffold na na QKZX01000039.1 = NW_024475767.1 Primary Assembly 45159 na JmScfU0024 unplaced-scaffold na na QKZX01000040.1 = NW_024475768.1 Primary Assembly 44001 na JmScfU0025 unplaced-scaffold na na QKZX01000041.1 = NW_024475769.1 Primary Assembly 43309 na JmScfU0026 unplaced-scaffold na na QKZX01000042.1 = NW_024475770.1 Primary Assembly 43040 na JmScfU0027 unplaced-scaffold na na QKZX01000043.1 = NW_024475771.1 Primary Assembly 42491 na JmScfU0028 unplaced-scaffold na na QKZX01000044.1 = NW_024475772.1 Primary Assembly 42455 na JmScfU0029 unplaced-scaffold na na QKZX01000045.1 = NW_024475773.1 Primary Assembly 42294 na JmScfU0030 unplaced-scaffold na na QKZX01000046.1 = NW_024475774.1 Primary Assembly 41986 na JmScfU0031 unplaced-scaffold na na QKZX01000047.1 = NW_024475775.1 Primary Assembly 39938 na JmScfU0032 unplaced-scaffold na na QKZX01000048.1 = NW_024475776.1 Primary Assembly 39640 na JmScfU0033 unplaced-scaffold na na QKZX01000049.1 = NW_024475777.1 Primary Assembly 39477 na JmScfU0034 unplaced-scaffold na na QKZX01000050.1 = NW_024475778.1 Primary Assembly 39419 na JmScfU0035 unplaced-scaffold na na QKZX01000051.1 = NW_024475779.1 Primary Assembly 39143 na JmScfU0036 unplaced-scaffold na na QKZX01000052.1 = NW_024475780.1 Primary Assembly 38979 na JmScfU0037 unplaced-scaffold na na QKZX01000053.1 = NW_024475781.1 Primary Assembly 38623 na JmScfU0038 unplaced-scaffold na na QKZX01000054.1 = NW_024475782.1 Primary Assembly 36574 na JmScfU0039 unplaced-scaffold na na QKZX01000055.1 = NW_024475783.1 Primary Assembly 36440 na JmScfU0040 unplaced-scaffold na na QKZX01000056.1 = NW_024475784.1 Primary Assembly 36073 na JmScfU0041 unplaced-scaffold na na QKZX01000057.1 = NW_024475785.1 Primary Assembly 35505 na JmScfU0042 unplaced-scaffold na na QKZX01000058.1 = NW_024475786.1 Primary Assembly 34433 na JmScfU0043 unplaced-scaffold na na QKZX01000059.1 = NW_024475787.1 Primary Assembly 33993 na JmScfU0044 unplaced-scaffold na na QKZX01000060.1 = NW_024475788.1 Primary Assembly 33875 na JmScfU0045 unplaced-scaffold na na QKZX01000061.1 = NW_024475789.1 Primary Assembly 33230 na JmScfU0046 unplaced-scaffold na na QKZX01000062.1 = NW_024475790.1 Primary Assembly 32957 na JmScfU0047 unplaced-scaffold na na QKZX01000063.1 = NW_024475791.1 Primary Assembly 32500 na JmScfU0048 unplaced-scaffold na na QKZX01000064.1 = NW_024475792.1 Primary Assembly 32056 na JmScfU0049 unplaced-scaffold na na QKZX01000065.1 = NW_024475793.1 Primary Assembly 31911 na JmScfU0050 unplaced-scaffold na na QKZX01000066.1 = NW_024475794.1 Primary Assembly 31773 na JmScfU0051 unplaced-scaffold na na QKZX01000067.1 = NW_024475795.1 Primary Assembly 30545 na JmScfU0052 unplaced-scaffold na na QKZX01000068.1 = NW_024475796.1 Primary Assembly 30102 na JmScfU0053 unplaced-scaffold na na QKZX01000069.1 = NW_024475797.1 Primary Assembly 29645 na JmScfU0054 unplaced-scaffold na na QKZX01000070.1 = NW_024475798.1 Primary Assembly 29028 na JmScfU0055 unplaced-scaffold na na QKZX01000071.1 = NW_024475799.1 Primary Assembly 28983 na JmScfU0056 unplaced-scaffold na na QKZX01000072.1 = NW_024475800.1 Primary Assembly 28853 na JmScfU0057 unplaced-scaffold na na QKZX01000073.1 = NW_024475801.1 Primary Assembly 28506 na JmScfU0058 unplaced-scaffold na na QKZX01000074.1 = NW_024475802.1 Primary Assembly 28013 na JmScfU0059 unplaced-scaffold na na QKZX01000075.1 = NW_024475803.1 Primary Assembly 27908 na JmScfU0060 unplaced-scaffold na na QKZX01000076.1 = NW_024475804.1 Primary Assembly 27480 na JmScfU0061 unplaced-scaffold na na QKZX01000077.1 = NW_024475805.1 Primary Assembly 27321 na JmScfU0062 unplaced-scaffold na na QKZX01000078.1 = NW_024475806.1 Primary Assembly 27309 na JmScfU0063 unplaced-scaffold na na QKZX01000079.1 = NW_024475807.1 Primary Assembly 27126 na JmScfU0064 unplaced-scaffold na na QKZX01000080.1 = NW_024475808.1 Primary Assembly 26816 na JmScfU0065 unplaced-scaffold na na QKZX01000081.1 = NW_024475809.1 Primary Assembly 26740 na JmScfU0066 unplaced-scaffold na na QKZX01000082.1 = NW_024475810.1 Primary Assembly 26686 na JmScfU0067 unplaced-scaffold na na QKZX01000083.1 = NW_024475811.1 Primary Assembly 26186 na JmScfU0068 unplaced-scaffold na na QKZX01000084.1 = NW_024475812.1 Primary Assembly 25783 na JmScfU0069 unplaced-scaffold na na QKZX01000085.1 = NW_024475813.1 Primary Assembly 24664 na JmScfU0070 unplaced-scaffold na na QKZX01000086.1 = NW_024475814.1 Primary Assembly 24424 na JmScfU0071 unplaced-scaffold na na QKZX01000087.1 = NW_024475815.1 Primary Assembly 23428 na JmScfU0072 unplaced-scaffold na na QKZX01000088.1 = NW_024475816.1 Primary Assembly 23052 na JmScfU0073 unplaced-scaffold na na QKZX01000089.1 = NW_024475817.1 Primary Assembly 22787 na JmScfU0074 unplaced-scaffold na na QKZX01000090.1 = NW_024475818.1 Primary Assembly 22646 na JmScfU0075 unplaced-scaffold na na QKZX01000091.1 = NW_024475819.1 Primary Assembly 20580 na JmScfU0076 unplaced-scaffold na na QKZX01000092.1 = NW_024475820.1 Primary Assembly 20042 na JmScfU0077 unplaced-scaffold na na QKZX01000093.1 = NW_024475821.1 Primary Assembly 19958 na JmScfU0078 unplaced-scaffold na na QKZX01000094.1 = NW_024475822.1 Primary Assembly 19697 na JmScfU0079 unplaced-scaffold na na QKZX01000095.1 = NW_024475823.1 Primary Assembly 18346 na JmScfU0080 unplaced-scaffold na na QKZX01000096.1 = NW_024475824.1 Primary Assembly 18187 na JmScfU0081 unplaced-scaffold na na QKZX01000097.1 = NW_024475825.1 Primary Assembly 17870 na JmScfU0082 unplaced-scaffold na na QKZX01000098.1 = NW_024475826.1 Primary Assembly 17588 na JmScfU0083 unplaced-scaffold na na QKZX01000099.1 = NW_024475827.1 Primary Assembly 17116 na JmScfU0084 unplaced-scaffold na na QKZX01000100.1 = NW_024475828.1 Primary Assembly 16849 na JmScfU0085 unplaced-scaffold na na QKZX01000101.1 = NW_024475829.1 Primary Assembly 16780 na JmScfU0086 unplaced-scaffold na na QKZX01000102.1 = NW_024475830.1 Primary Assembly 15807 na JmScfU0087 unplaced-scaffold na na QKZX01000103.1 = NW_024475831.1 Primary Assembly 15807 na JmScfU0088 unplaced-scaffold na na QKZX01000104.1 = NW_024475832.1 Primary Assembly 14927 na JmScfU0089 unplaced-scaffold na na QKZX01000105.1 = NW_024475833.1 Primary Assembly 14650 na JmScfU0090 unplaced-scaffold na na QKZX01000106.1 = NW_024475834.1 Primary Assembly 13879 na JmScfU0091 unplaced-scaffold na na QKZX01000107.1 = NW_024475835.1 Primary Assembly 13506 na JmScfU0092 unplaced-scaffold na na QKZX01000108.1 = NW_024475836.1 Primary Assembly 13236 na JmScfU0093 unplaced-scaffold na na QKZX01000109.1 = NW_024475837.1 Primary Assembly 13151 na JmScfU0094 unplaced-scaffold na na QKZX01000110.1 = NW_024475838.1 Primary Assembly 12783 na JmScfU0095 unplaced-scaffold na na QKZX01000111.1 = NW_024475839.1 Primary Assembly 12580 na JmScfU0096 unplaced-scaffold na na QKZX01000112.1 = NW_024475840.1 Primary Assembly 12268 na JmScfU0097 unplaced-scaffold na na QKZX01000113.1 = NW_024475841.1 Primary Assembly 12242 na JmScfU0098 unplaced-scaffold na na QKZX01000114.1 = NW_024475842.1 Primary Assembly 12216 na JmScfU0099 unplaced-scaffold na na QKZX01000115.1 = NW_024475843.1 Primary Assembly 12010 na JmScfU0100 unplaced-scaffold na na QKZX01000116.1 = NW_024475844.1 Primary Assembly 12000 na JmScfU0101 unplaced-scaffold na na QKZX01000117.1 = NW_024475845.1 Primary Assembly 11989 na JmScfU0102 unplaced-scaffold na na QKZX01000118.1 = NW_024475846.1 Primary Assembly 11915 na JmScfU0103 unplaced-scaffold na na QKZX01000119.1 = NW_024475847.1 Primary Assembly 11713 na JmScfU0104 unplaced-scaffold na na QKZX01000120.1 = NW_024475848.1 Primary Assembly 11671 na JmScfU0105 unplaced-scaffold na na QKZX01000121.1 = NW_024475849.1 Primary Assembly 11294 na JmScfU0106 unplaced-scaffold na na QKZX01000122.1 = NW_024475850.1 Primary Assembly 11271 na JmScfU0107 unplaced-scaffold na na QKZX01000123.1 = NW_024475851.1 Primary Assembly 11264 na JmScfU0108 unplaced-scaffold na na QKZX01000124.1 = NW_024475852.1 Primary Assembly 11194 na JmScfU0109 unplaced-scaffold na na QKZX01000125.1 = NW_024475853.1 Primary Assembly 11182 na JmScfU0110 unplaced-scaffold na na QKZX01000126.1 = NW_024475854.1 Primary Assembly 11117 na JmScfU0111 unplaced-scaffold na na QKZX01000127.1 = NW_024475855.1 Primary Assembly 10967 na JmScfU0112 unplaced-scaffold na na QKZX01000128.1 = NW_024475856.1 Primary Assembly 10618 na JmScfU0113 unplaced-scaffold na na QKZX01000129.1 = NW_024475857.1 Primary Assembly 10511 na JmScfU0114 unplaced-scaffold na na QKZX01000130.1 = NW_024475858.1 Primary Assembly 10055 na JmScfU0115 unplaced-scaffold na na QKZX01000131.1 = NW_024475859.1 Primary Assembly 9988 na JmScfU0116 unplaced-scaffold na na QKZX01000132.1 = NW_024475860.1 Primary Assembly 9507 na JmScfU0117 unplaced-scaffold na na QKZX01000133.1 = NW_024475861.1 Primary Assembly 9097 na JmScfU0118 unplaced-scaffold na na QKZX01000134.1 = NW_024475862.1 Primary Assembly 8906 na JmScfU0119 unplaced-scaffold na na QKZX01000135.1 = NW_024475863.1 Primary Assembly 7988 na JmScfU0120 unplaced-scaffold na na QKZX01000136.1 = NW_024475864.1 Primary Assembly 7967 na JmScfU0121 unplaced-scaffold na na QKZX01000137.1 = NW_024475865.1 Primary Assembly 7760 na JmScfU0122 unplaced-scaffold na na QKZX01000138.1 = NW_024475866.1 Primary Assembly 7757 na JmScfU0123 unplaced-scaffold na na QKZX01000139.1 = NW_024475867.1 Primary Assembly 7672 na JmScfU0124 unplaced-scaffold na na QKZX01000140.1 = NW_024475868.1 Primary Assembly 7634 na JmScfU0125 unplaced-scaffold na na QKZX01000141.1 = NW_024475869.1 Primary Assembly 7602 na JmScfU0126 unplaced-scaffold na na QKZX01000142.1 = NW_024475870.1 Primary Assembly 7505 na JmScfU0127 unplaced-scaffold na na QKZX01000143.1 = NW_024475871.1 Primary Assembly 7491 na JmScfU0128 unplaced-scaffold na na QKZX01000144.1 = NW_024475872.1 Primary Assembly 7068 na JmScfU0129 unplaced-scaffold na na QKZX01000145.1 = NW_024475873.1 Primary Assembly 7064 na JmScfU0130 unplaced-scaffold na na QKZX01000146.1 = NW_024475874.1 Primary Assembly 7057 na JmScfU0131 unplaced-scaffold na na QKZX01000147.1 = NW_024475875.1 Primary Assembly 7053 na JmScfU0132 unplaced-scaffold na na QKZX01000148.1 = NW_024475876.1 Primary Assembly 6901 na JmScfU0133 unplaced-scaffold na na QKZX01000149.1 = NW_024475877.1 Primary Assembly 6768 na JmScfU0134 unplaced-scaffold na na QKZX01000150.1 = NW_024475878.1 Primary Assembly 6566 na JmScfU0135 unplaced-scaffold na na QKZX01000151.1 = NW_024475879.1 Primary Assembly 6456 na JmScfU0136 unplaced-scaffold na na QKZX01000152.1 = NW_024475880.1 Primary Assembly 5935 na JmScfU0137 unplaced-scaffold na na QKZX01000153.1 = NW_024475881.1 Primary Assembly 5407 na JmScfU0138 unplaced-scaffold na na QKZX01000154.1 = NW_024475882.1 Primary Assembly 5379 na