# Assembly name: mPhyDis1.pri.v3 # Organism name: Phyllostomus discolor (pale spear-nosed bat) # Isolate: MPI-MPIP mPhyDis1 # Sex: male # Taxid: 89673 # BioSample: SAMN09948786 # BioProject: PRJNA489141 # Submitter: Vertebrate Genomes Project # Date: 2020-05-12 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: RXPA02 # Assembly method: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve B v. spQI/BssSI 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10 # Expected final version: no # Genome coverage: 65.8x # Sequencing technology: PacBio Sequel; 10X Genomics linked reads; Bioanano Genomics 2 enzyme; Arima Genomics HiC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_004126475.3 # RefSeq assembly accession: GCF_004126475.2 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_004115245.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_004126485.2 GCF_004126485.2 Primary Assembly ## GCA_005460155.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name S3 assembled-molecule 1 Chromosome CM014254.2 = NC_040903.2 Primary Assembly 218430143 na S2 assembled-molecule 2 Chromosome CM014255.2 = NC_040904.2 Primary Assembly 217365085 na S1 assembled-molecule 3 Chromosome CM014256.2 = NC_040905.2 Primary Assembly 214898898 na S4 assembled-molecule 4 Chromosome CM014257.2 = NC_040906.2 Primary Assembly 209856503 na S5 assembled-molecule 5 Chromosome CM014258.2 = NC_040907.2 Primary Assembly 175148221 na S6 assembled-molecule 6 Chromosome CM014259.2 = NC_040908.2 Primary Assembly 171742863 na S7 assembled-molecule 7 Chromosome CM014260.2 = NC_040909.2 Primary Assembly 139247929 na S8 assembled-molecule 8 Chromosome CM014261.2 = NC_040910.2 Primary Assembly 114856535 na S10 assembled-molecule 9 Chromosome CM014262.2 = NC_040911.2 Primary Assembly 105687968 na S11 assembled-molecule 10 Chromosome CM014263.2 = NC_040912.2 Primary Assembly 95633574 na S12 assembled-molecule 11 Chromosome CM014264.2 = NC_040913.2 Primary Assembly 95224836 na S14 assembled-molecule 12 Chromosome CM014265.2 = NC_040914.2 Primary Assembly 77959510 na S13 assembled-molecule 13 Chromosome CM014266.2 = NC_040915.2 Primary Assembly 77039987 na S15 assembled-molecule 14 Chromosome CM014267.2 = NC_040916.2 Primary Assembly 52274924 na S16 assembled-molecule 15 Chromosome CM014268.2 = NC_040917.2 Primary Assembly 26886775 na X assembled-molecule X Chromosome CM023025.1 = NC_050198.1 Primary Assembly 107342191 na Y assembled-molecule Y Chromosome CM023026.1 = NC_050199.1 Primary Assembly 4591497 na mPhyDis1_scaffold_1 unlocalized-scaffold 15 Chromosome RXPA02000017.1 = NW_023397489.1 Primary Assembly 716790 na mPhyDis1_scaffold_2 unlocalized-scaffold 15 Chromosome RXPA02000018.1 = NW_023397491.1 Primary Assembly 362420 na mPhyDis1_scaffold_4 unlocalized-scaffold 15 Chromosome RXPA02000020.1 = NW_023397494.1 Primary Assembly 206240 na mPhyDis1_scaffold_12 unlocalized-scaffold 15 Chromosome RXPA02000028.1 = NW_023397490.1 Primary Assembly 141723 na mPhyDis1_scaffold_33 unlocalized-scaffold 15 Chromosome RXPA02000049.1 = NW_023397492.1 Primary Assembly 223466 na mPhyDis1_scaffold_37 unlocalized-scaffold 15 Chromosome RXPA02000053.1 = NW_023397493.1 Primary Assembly 407212 na mPhyDis1_scaffold_43 unlocalized-scaffold 15 Chromosome RXPA02000059.1 = NW_023397495.1 Primary Assembly 105528 na mPhyDis1_scaffold_3 unplaced-scaffold na na RXPA02000019.1 = NW_023397516.1 Primary Assembly 102419 na mPhyDis1_scaffold_5 unplaced-scaffold na na RXPA02000021.1 = NW_023397534.1 Primary Assembly 57015 na mPhyDis1_scaffold_6 unplaced-scaffold na na RXPA02000022.1 = NW_023397545.1 Primary Assembly 45375 na mPhyDis1_scaffold_7 unplaced-scaffold na na RXPA02000023.1 = NW_023397546.1 Primary Assembly 59143 na mPhyDis1_scaffold_8 unplaced-scaffold na na RXPA02000024.1 = NW_023397547.1 Primary Assembly 36013 na mPhyDis1_scaffold_9 unplaced-scaffold na na RXPA02000025.1 = NW_023397548.1 Primary Assembly 23692 na mPhyDis1_scaffold_10 unplaced-scaffold na na RXPA02000026.1 = NW_023397497.1 Primary Assembly 68107 na mPhyDis1_scaffold_11 unplaced-scaffold na na RXPA02000027.1 = NW_023397498.1 Primary Assembly 47903 na mPhyDis1_scaffold_13 unplaced-scaffold na na RXPA02000029.1 = NW_023397499.1 Primary Assembly 31548 na mPhyDis1_scaffold_14 unplaced-scaffold na na RXPA02000030.1 = NW_023397500.1 Primary Assembly 24442 na mPhyDis1_scaffold_15 unplaced-scaffold na na RXPA02000031.1 = NW_023397501.1 Primary Assembly 89244 na mPhyDis1_scaffold_16 unplaced-scaffold na na RXPA02000032.1 = NW_023397502.1 Primary Assembly 28926 na mPhyDis1_scaffold_17 unplaced-scaffold na na RXPA02000033.1 = NW_023397503.1 Primary Assembly 21147 na mPhyDis1_scaffold_18 unplaced-scaffold na na RXPA02000034.1 = NW_023397504.1 Primary Assembly 27270 na mPhyDis1_scaffold_19 unplaced-scaffold na na RXPA02000035.1 = NW_023397505.1 Primary Assembly 41423 na mPhyDis1_scaffold_20 unplaced-scaffold na na RXPA02000036.1 = NW_023397506.1 Primary Assembly 49744 na mPhyDis1_scaffold_21 unplaced-scaffold na na RXPA02000037.1 = NW_023397507.1 Primary Assembly 35546 na mPhyDis1_scaffold_22 unplaced-scaffold na na RXPA02000038.1 = NW_023397508.1 Primary Assembly 40986 na mPhyDis1_scaffold_23 unplaced-scaffold na na RXPA02000039.1 = NW_023397509.1 Primary Assembly 26800 na mPhyDis1_scaffold_24 unplaced-scaffold na na RXPA02000040.1 = NW_023397510.1 Primary Assembly 156074 na mPhyDis1_scaffold_25 unplaced-scaffold na na RXPA02000041.1 = NW_023397511.1 Primary Assembly 30469 na mPhyDis1_scaffold_26 unplaced-scaffold na na RXPA02000042.1 = NW_023397512.1 Primary Assembly 33541 na mPhyDis1_scaffold_27 unplaced-scaffold na na RXPA02000043.1 = NW_023397513.1 Primary Assembly 39136 na mPhyDis1_scaffold_28 unplaced-scaffold na na RXPA02000044.1 = NW_023397514.1 Primary Assembly 35482 na mPhyDis1_scaffold_29 unplaced-scaffold na na RXPA02000045.1 = NW_023397515.1 Primary Assembly 26304 na mPhyDis1_scaffold_30 unplaced-scaffold na na RXPA02000046.1 = NW_023397517.1 Primary Assembly 24599 na mPhyDis1_scaffold_31 unplaced-scaffold na na RXPA02000047.1 = NW_023397518.1 Primary Assembly 36187 na mPhyDis1_scaffold_32 unplaced-scaffold na na RXPA02000048.1 = NW_023397519.1 Primary Assembly 24796 na mPhyDis1_scaffold_34 unplaced-scaffold na na RXPA02000050.1 = NW_023397520.1 Primary Assembly 50830 na mPhyDis1_scaffold_35 unplaced-scaffold na na RXPA02000051.1 = NW_023397521.1 Primary Assembly 29043 na mPhyDis1_scaffold_36 unplaced-scaffold na na RXPA02000052.1 = NW_023397522.1 Primary Assembly 25942 na mPhyDis1_scaffold_38 unplaced-scaffold na na RXPA02000054.1 = NW_023397523.1 Primary Assembly 33812 na mPhyDis1_scaffold_39 unplaced-scaffold na na RXPA02000055.1 = NW_023397524.1 Primary Assembly 39370 na mPhyDis1_scaffold_40 unplaced-scaffold na na RXPA02000056.1 = NW_023397525.1 Primary Assembly 30351 na mPhyDis1_scaffold_41 unplaced-scaffold na na RXPA02000057.1 = NW_023397526.1 Primary Assembly 41059 na mPhyDis1_scaffold_42 unplaced-scaffold na na RXPA02000058.1 = NW_023397527.1 Primary Assembly 24488 na mPhyDis1_scaffold_44 unplaced-scaffold na na RXPA02000060.1 = NW_023397528.1 Primary Assembly 24830 na mPhyDis1_scaffold_45 unplaced-scaffold na na RXPA02000062.1 = NW_023397529.1 Primary Assembly 21689 na mPhyDis1_scaffold_46 unplaced-scaffold na na RXPA02000063.1 = NW_023397530.1 Primary Assembly 39351 na mPhyDis1_scaffold_47 unplaced-scaffold na na RXPA02000064.1 = NW_023397531.1 Primary Assembly 40559 na mPhyDis1_scaffold_48 unplaced-scaffold na na RXPA02000065.1 = NW_023397532.1 Primary Assembly 28380 na mPhyDis1_scaffold_49 unplaced-scaffold na na RXPA02000066.1 = NW_023397533.1 Primary Assembly 51689 na mPhyDis1_scaffold_50 unplaced-scaffold na na RXPA02000067.1 = NW_023397535.1 Primary Assembly 82430 na mPhyDis1_scaffold_51 unplaced-scaffold na na RXPA02000068.1 = NW_023397536.1 Primary Assembly 28770 na mPhyDis1_scaffold_52 unplaced-scaffold na na RXPA02000069.1 = NW_023397537.1 Primary Assembly 47368 na mPhyDis1_scaffold_53 unplaced-scaffold na na RXPA02000070.1 = NW_023397538.1 Primary Assembly 56739 na mPhyDis1_scaffold_54 unplaced-scaffold na na RXPA02000071.1 = NW_023397539.1 Primary Assembly 25193 na mPhyDis1_scaffold_55 unplaced-scaffold na na RXPA02000072.1 = NW_023397540.1 Primary Assembly 20585 na mPhyDis1_scaffold_56 unplaced-scaffold na na RXPA02000073.1 = NW_023397541.1 Primary Assembly 36009 na mPhyDis1_scaffold_57 unplaced-scaffold na na RXPA02000074.1 = NW_023397542.1 Primary Assembly 105170 na mPhyDis1_scaffold_58 unplaced-scaffold na na RXPA02000075.1 = NW_023397543.1 Primary Assembly 27667 na mPhyDis1_scaffold_59 unplaced-scaffold na na RXPA02000076.1 = NW_023397544.1 Primary Assembly 47613 na S12x unplaced-scaffold na na RXPA02000077.1 = NW_023397496.1 Primary Assembly 259755 na mPhyDis1_MT assembled-molecule MT Mitochondrion CM016611.2 <> na non-nuclear 16692 na