# Assembly name: D.miranda_PacBio2.1 # Organism name: Drosophila miranda (flies) # Infraspecific name: strain=MSH22 # Sex: male # Taxid: 7229 # BioSample: SAMN09375764 # BioProject: PRJNA474939 # Submitter: Bachtrog Lab, UC Berkeley # Date: 2019-09-23 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: QNQS02 # Assembly method: FALCON v. 1.7.5; Canu v. Jan-2017 # Expected final version: yes # Genome coverage: 100.0x # Sequencing technology: PacBio # RefSeq category: Representative Genome # GenBank assembly accession: GCA_003369915.2 # RefSeq assembly accession: GCF_003369915.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003369985.2 GCF_003369985.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name MullerA_pilon assembled-molecule XL Chromosome CM010493.2 = NC_046673.1 Primary Assembly 25342487 na MullerAD_pilon assembled-molecule XR Chromosome CM010494.2 = NC_046674.1 Primary Assembly 52279357 na MullerE_pilon assembled-molecule 2 Chromosome CM010495.2 = NC_046675.1 Primary Assembly 35263383 na MullerC_pilon assembled-molecule 3 Chromosome CM010496.2 = NC_046676.1 Primary Assembly 25306191 na MullerB_pilon assembled-molecule 4 Chromosome CM010497.2 = NC_046677.1 Primary Assembly 32539841 na MullerF_pilon assembled-molecule 5 Chromosome CM010498.2 = NC_046678.1 Primary Assembly 2366016 na Contig_Y28_pilon unlocalized-scaffold Y Chromosome QNQS02000026.1 = NW_022881612.1 Primary Assembly 63950 na Contig_Y48_pilon unlocalized-scaffold Y Chromosome QNQS02000030.1 = NW_022881634.1 Primary Assembly 19619 na Contig_Y29_pilon unlocalized-scaffold Y Chromosome QNQS02000041.1 = NW_022881613.1 Primary Assembly 39125 na Contig_Y42_pilon unlocalized-scaffold Y Chromosome QNQS02000042.1 = NW_022881628.1 Primary Assembly 25766 na Contig_Y41_pilon unlocalized-scaffold Y Chromosome QNQS02000043.1 = NW_022881627.1 Primary Assembly 27781 na Contig_Y33_pilon unlocalized-scaffold Y Chromosome QNQS02000044.1 = NW_022881618.1 Primary Assembly 45526 na Contig_Y27_pilon unlocalized-scaffold Y Chromosome QNQS02000045.1 = NW_022881611.1 Primary Assembly 58232 na Contig_Y24_pilon unlocalized-scaffold Y Chromosome QNQS02000046.1 = NW_022881608.1 Primary Assembly 72689 na Contig_Y22_pilon unlocalized-scaffold Y Chromosome QNQS02000047.1 = NW_022881606.1 Primary Assembly 74297 na Contig_Y6_pilon unlocalized-scaffold Y Chromosome QNQS02000048.1 = NW_022881651.1 Primary Assembly 1115462 na Contig_Y13_pilon unlocalized-scaffold Y Chromosome QNQS02000049.1 = NW_022881596.1 Primary Assembly 186031 na Contig_Y44_pilon unlocalized-scaffold Y Chromosome QNQS02000050.1 = NW_022881630.1 Primary Assembly 23799 na Contig_Y12_pilon unlocalized-scaffold Y Chromosome QNQS02000051.1 = NW_022881595.1 Primary Assembly 200617 na Contig_Y11_pilon unlocalized-scaffold Y Chromosome QNQS02000052.1 = NW_022881594.1 Primary Assembly 291740 na Contig_Y25_pilon unlocalized-scaffold Y Chromosome QNQS02000053.1 = NW_022881609.1 Primary Assembly 70326 na Contig_Y23_pilon unlocalized-scaffold Y Chromosome QNQS02000054.1 = NW_022881607.1 Primary Assembly 79661 na Contig_Y9_pilon unlocalized-scaffold Y Chromosome QNQS02000055.1 = NW_022881654.1 Primary Assembly 419271 na Contig_Y17_pilon unlocalized-scaffold Y Chromosome QNQS02000056.1 = NW_022881600.1 Primary Assembly 130534 na Contig_Y10_pilon unlocalized-scaffold Y Chromosome QNQS02000057.1 = NW_022881593.1 Primary Assembly 367352 na Contig_Y35_pilon unlocalized-scaffold Y Chromosome QNQS02000058.1 = NW_022881620.1 Primary Assembly 37266 na Contig_Y34_pilon unlocalized-scaffold Y Chromosome QNQS02000059.1 = NW_022881619.1 Primary Assembly 37330 na Contig_Y26_pilon unlocalized-scaffold Y Chromosome QNQS02000060.1 = NW_022881610.1 Primary Assembly 69720 na Contig_Y15_pilon unlocalized-scaffold Y Chromosome QNQS02000061.1 = NW_022881598.1 Primary Assembly 131277 na Contig_Y21_pilon unlocalized-scaffold Y Chromosome QNQS02000062.1 = NW_022881605.1 Primary Assembly 87767 na Contig_Y14_pilon unlocalized-scaffold Y Chromosome QNQS02000063.1 = NW_022881597.1 Primary Assembly 128736 na Contig_Y49_pilon unlocalized-scaffold Y Chromosome QNQS02000065.1 = NW_022881635.1 Primary Assembly 14727 na Contig_Y40_pilon unlocalized-scaffold Y Chromosome QNQS02000066.1 = NW_022881626.1 Primary Assembly 26815 na Contig_Y36_pilon unlocalized-scaffold Y Chromosome QNQS02000067.1 = NW_022881621.1 Primary Assembly 32078 na Contig_Y38_pilon unlocalized-scaffold Y Chromosome QNQS02000068.1 = NW_022881623.1 Primary Assembly 28275 na Contig_Y30_pilon unlocalized-scaffold Y Chromosome QNQS02000069.1 = NW_022881615.1 Primary Assembly 45166 na Contig_Y16_pilon unlocalized-scaffold Y Chromosome QNQS02000070.1 = NW_022881599.1 Primary Assembly 119694 na Contig_Y4_pilon unlocalized-scaffold Y Chromosome QNQS02000071.1 = NW_022881636.1 Primary Assembly 1516596 na Contig_Y7_pilon unlocalized-scaffold Y Chromosome QNQS02000072.1 = NW_022881652.1 Primary Assembly 651259 na Contig_Y1_pilon unlocalized-scaffold Y Chromosome QNQS02000073.1 = NW_022881603.1 Primary Assembly 53815770 na Contig_Y5_pilon unlocalized-scaffold Y Chromosome QNQS02000074.1 = NW_022881647.1 Primary Assembly 1446963 na Contig_Y52_pilon unlocalized-scaffold Y Chromosome QNQS02000075.1 = NW_022881639.1 Primary Assembly 15266 na Contig_Y43_pilon unlocalized-scaffold Y Chromosome QNQS02000076.1 = NW_022881629.1 Primary Assembly 25509 na Contig_Y39_pilon unlocalized-scaffold Y Chromosome QNQS02000077.1 = NW_022881624.1 Primary Assembly 28179 na Contig_Y50_pilon unlocalized-scaffold Y Chromosome QNQS02000078.1 = NW_022881637.1 Primary Assembly 16734 na Contig_Y31_pilon unlocalized-scaffold Y Chromosome QNQS02000079.1 = NW_022881616.1 Primary Assembly 48009 na Contig_Y59_pilon unlocalized-scaffold Y Chromosome QNQS02000080.1 = NW_022881646.1 Primary Assembly 10396 na Contig_Y8_pilon unlocalized-scaffold Y Chromosome QNQS02000081.1 = NW_022881653.1 Primary Assembly 422300 na Contig_Y53_pilon unlocalized-scaffold Y Chromosome QNQS02000082.1 = NW_022881640.1 Primary Assembly 15213 na Contig_Y18_pilon unlocalized-scaffold Y Chromosome QNQS02000083.1 = NW_022881601.1 Primary Assembly 112791 na Contig_Y55_pilon unlocalized-scaffold Y Chromosome QNQS02000084.1 = NW_022881642.1 Primary Assembly 14654 na Contig_Y57_pilon unlocalized-scaffold Y Chromosome QNQS02000085.1 = NW_022881644.1 Primary Assembly 13726 na Contig_Y60_pilon unlocalized-scaffold Y Chromosome QNQS02000086.1 = NW_022881648.1 Primary Assembly 7309 na Contig_Y58_pilon unlocalized-scaffold Y Chromosome QNQS02000087.1 = NW_022881645.1 Primary Assembly 12968 na Contig_Y62_pilon unlocalized-scaffold Y Chromosome QNQS02000088.1 = NW_022881650.1 Primary Assembly 4095 na Contig_Y46_pilon unlocalized-scaffold Y Chromosome QNQS02000089.1 = NW_022881632.1 Primary Assembly 22779 na Contig_Y61_pilon unlocalized-scaffold Y Chromosome QNQS02000090.1 = NW_022881649.1 Primary Assembly 4329 na Contig_Y56_pilon unlocalized-scaffold Y Chromosome QNQS02000091.1 = NW_022881643.1 Primary Assembly 14476 na Contig_Y45_pilon unlocalized-scaffold Y Chromosome QNQS02000092.1 = NW_022881631.1 Primary Assembly 23115 na Contig_Y54_pilon unlocalized-scaffold Y Chromosome QNQS02000093.1 = NW_022881641.1 Primary Assembly 14743 na Contig_Y51_pilon unlocalized-scaffold Y Chromosome QNQS02000094.1 = NW_022881638.1 Primary Assembly 16449 na Contig_Y19_pilon unlocalized-scaffold Y Chromosome QNQS02000095.1 = NW_022881602.1 Primary Assembly 109654 na Contig_Y37_pilon unlocalized-scaffold Y Chromosome QNQS02000096.1 = NW_022881622.1 Primary Assembly 31138 na Contig_Y47_pilon unlocalized-scaffold Y Chromosome QNQS02000097.1 = NW_022881633.1 Primary Assembly 20093 na Contig_Y32_pilon unlocalized-scaffold Y Chromosome QNQS02000098.1 = NW_022881617.1 Primary Assembly 39204 na Contig_Y20_pilon unlocalized-scaffold Y Chromosome QNQS02000099.1 = NW_022881604.1 Primary Assembly 92640 na Contig_Y3_pilon unlocalized-scaffold Y Chromosome QNQS02000100.1 = NW_022881625.1 Primary Assembly 10667253 na Contig_Y2_pilon unlocalized-scaffold Y Chromosome QNQS02000104.1 = NW_022881614.1 Primary Assembly 37200578 na Contig_AX10_pilon unplaced-scaffold na na QNQS02000040.1 = NW_022881655.1 Primary Assembly 90940 na Contig_AX11_pilon unplaced-scaffold na na QNQS02000013.1 = NW_022881656.1 Primary Assembly 83138 na Contig_AX12_pilon unplaced-scaffold na na QNQS02000008.1 = NW_022881657.1 Primary Assembly 79853 na Contig_AX13_pilon unplaced-scaffold na na QNQS02000005.1 = NW_022881658.1 Primary Assembly 67786 na Contig_AX14_pilon unplaced-scaffold na na QNQS02000022.1 = NW_022881659.1 Primary Assembly 55649 na Contig_AX15_pilon unplaced-scaffold na na QNQS02000003.1 = NW_022881660.1 Primary Assembly 50223 na Contig_AX16_pilon unplaced-scaffold na na QNQS02000037.1 = NW_022881661.1 Primary Assembly 48966 na Contig_AX17_pilon unplaced-scaffold na na QNQS02000027.1 = NW_022881662.1 Primary Assembly 37313 na Contig_AX18_pilon unplaced-scaffold na na QNQS02000032.1 = NW_022881663.1 Primary Assembly 33065 na Contig_AX19_pilon unplaced-scaffold na na QNQS02000001.1 = NW_022881664.1 Primary Assembly 32442 na Contig_AX1_pilon unplaced-scaffold na na QNQS02000064.1 = NW_022881665.1 Primary Assembly 760225 na Contig_AX20_pilon unplaced-scaffold na na QNQS02000017.1 = NW_022881666.1 Primary Assembly 31834 na Contig_AX21_pilon unplaced-scaffold na na QNQS02000031.1 = NW_022881667.1 Primary Assembly 31217 na Contig_AX22_pilon unplaced-scaffold na na QNQS02000024.1 = NW_022881668.1 Primary Assembly 30555 na Contig_AX23_pilon unplaced-scaffold na na QNQS02000023.1 = NW_022881669.1 Primary Assembly 29396 na Contig_AX24_pilon unplaced-scaffold na na QNQS02000038.1 = NW_022881670.1 Primary Assembly 29375 na Contig_AX25_pilon unplaced-scaffold na na QNQS02000018.1 = NW_022881671.1 Primary Assembly 21181 na Contig_AX26_pilon unplaced-scaffold na na QNQS02000025.1 = NW_022881672.1 Primary Assembly 15440 na Contig_AX27_pilon unplaced-scaffold na na QNQS02000029.1 = NW_022881673.1 Primary Assembly 11426 na Contig_AX28_pilon unplaced-scaffold na na QNQS02000033.1 = NW_022881674.1 Primary Assembly 10260 na Contig_AX29_pilon unplaced-scaffold na na QNQS02000039.1 = NW_022881675.1 Primary Assembly 9968 na Contig_AX2_pilon unplaced-scaffold na na QNQS02000014.1 = NW_022881676.1 Primary Assembly 502986 na Contig_AX30_pilon unplaced-scaffold na na QNQS02000035.1 = NW_022881677.1 Primary Assembly 8083 na Contig_AX31_pilon unplaced-scaffold na na QNQS02000034.1 = NW_022881678.1 Primary Assembly 7767 na Contig_AX32_pilon unplaced-scaffold na na QNQS02000020.1 = NW_022881679.1 Primary Assembly 6649 na Contig_AX33_pilon unplaced-scaffold na na QNQS02000028.1 = NW_022881680.1 Primary Assembly 5124 na Contig_AX34_pilon unplaced-scaffold na na QNQS02000019.1 = NW_022881681.1 Primary Assembly 3334 na Contig_AX35_pilon unplaced-scaffold na na QNQS02000021.1 = NW_022881682.1 Primary Assembly 3185 na Contig_AX3_pilon unplaced-scaffold na na QNQS02000012.1 = NW_022881683.1 Primary Assembly 487532 na Contig_AX4_pilon unplaced-scaffold na na QNQS02000007.1 = NW_022881684.1 Primary Assembly 188151 na Contig_AX5_pilon unplaced-scaffold na na QNQS02000006.1 = NW_022881685.1 Primary Assembly 167781 na Contig_AX6_pilon unplaced-scaffold na na QNQS02000002.1 = NW_022881686.1 Primary Assembly 167660 na Contig_AX7_pilon unplaced-scaffold na na QNQS02000004.1 = NW_022881687.1 Primary Assembly 152545 na Contig_AX8_pilon unplaced-scaffold na na QNQS02000036.1 = NW_022881688.1 Primary Assembly 112083 na Contig_AX_tr1_pilon unplaced-scaffold na na QNQS02000102.1 = NW_022881689.1 Primary Assembly 75856 na Contig_AX_tr2_pilon unplaced-scaffold na na QNQS02000103.1 = NW_022881690.1 Primary Assembly 44920 na