# Assembly name:  Xiphophorus_hellerii-4.1
# Organism name:  Xiphophorus hellerii (green swordtail)
# Infraspecific name:  strain=12219
# Sex:  male
# Taxid:          8084
# BioSample:      SAMN09545741
# BioProject:     PRJNA290782
# Submitter:      McDonnell Genome Institute - Washington University School of Medicine
# Date:           2019-12-05
# Assembly type:  haploid
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    QPIH02
# Assembly method: HGAP4 v. 2018
# Expected final version: yes
# Genome coverage: 68.0x
# Sequencing technology: PacBio Sequel; Illumina
# RefSeq category: Representative Genome
# GenBank assembly accession: GCA_003331165.2
# RefSeq assembly accession: GCF_003331165.1
# RefSeq assembly and GenBank assemblies identical: no
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_003331175.2	GCF_003331175.1	Primary Assembly
## 	GCF_010140135.1	non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
chr1	assembled-molecule	1	Chromosome	CM010375.2	=	NC_045672.1	Primary Assembly	33455058	na
chr2	assembled-molecule	2	Chromosome	CM010376.2	=	NC_045673.1	Primary Assembly	33147851	na
chr3	assembled-molecule	3	Chromosome	CM010377.2	=	NC_045674.1	Primary Assembly	33985125	na
chr4	assembled-molecule	4	Chromosome	CM010378.2	=	NC_045675.1	Primary Assembly	35268414	na
chr5	assembled-molecule	5	Chromosome	CM010379.1	=	NC_045676.1	Primary Assembly	34474212	na
chr6	assembled-molecule	6	Chromosome	CM010380.2	=	NC_045677.1	Primary Assembly	30798394	na
chr7	assembled-molecule	7	Chromosome	CM010381.2	=	NC_045678.1	Primary Assembly	32705459	na
chr8	assembled-molecule	8	Chromosome	CM010382.2	=	NC_045679.1	Primary Assembly	29861225	na
chr9	assembled-molecule	9	Chromosome	CM010383.2	=	NC_045680.1	Primary Assembly	33125647	na
chr10	assembled-molecule	10	Chromosome	CM010384.2	=	NC_045681.1	Primary Assembly	26477563	na
chr11	assembled-molecule	11	Chromosome	CM010385.2	=	NC_045682.1	Primary Assembly	29512100	na
chr12	assembled-molecule	12	Chromosome	CM010386.2	=	NC_045683.1	Primary Assembly	34595283	na
chr13	assembled-molecule	13	Chromosome	CM010387.2	=	NC_045684.1	Primary Assembly	29701587	na
chr14	assembled-molecule	14	Chromosome	CM010388.2	=	NC_045685.1	Primary Assembly	29572159	na
chr15	assembled-molecule	15	Chromosome	CM010389.2	=	NC_045686.1	Primary Assembly	26169733	na
chr16	assembled-molecule	16	Chromosome	CM010390.2	=	NC_045687.1	Primary Assembly	26312210	na
chr17	assembled-molecule	17	Chromosome	CM010391.2	=	NC_045688.1	Primary Assembly	20915083	na
chr18	assembled-molecule	18	Chromosome	CM010392.2	=	NC_045689.1	Primary Assembly	34926625	na
chr19	assembled-molecule	19	Chromosome	CM010393.2	=	NC_045690.1	Primary Assembly	29276582	na
chr20	assembled-molecule	20	Chromosome	CM010394.2	=	NC_045691.1	Primary Assembly	34961375	na
chr21	assembled-molecule	21	Chromosome	CM010395.1	=	NC_045692.1	Primary Assembly	26329792	na
chr22	assembled-molecule	22	Chromosome	CM010396.2	=	NC_045693.1	Primary Assembly	31104622	na
chr23	assembled-molecule	23	Chromosome	CM010397.2	=	NC_045694.1	Primary Assembly	32404057	na
chr24	assembled-molecule	24	Chromosome	CM010398.2	=	NC_045695.1	Primary Assembly	17660500	na
PGA_scaffold_73__1_contigs__length_124999	unplaced-scaffold	na	na	QPIH02000014.1	=	NW_022587648.1	Primary Assembly	124999	na
PGA_scaffold_61__1_contigs__length_124999	unplaced-scaffold	na	na	QPIH02000047.1	=	NW_022587636.1	Primary Assembly	124999	na
PGA_scaffold_62__1_contigs__length_179941	unplaced-scaffold	na	na	QPIH02000048.1	=	NW_022587637.1	Primary Assembly	179941	na
PGA_scaffold_77__1_contigs__length_49999	unplaced-scaffold	na	na	QPIH02000062.1	=	NW_022587652.1	Primary Assembly	49999	na
PGA_scaffold_66__1_contigs__length_299863	unplaced-scaffold	na	na	QPIH02000068.1	=	NW_022587641.1	Primary Assembly	299863	na
PGA_scaffold_65__1_contigs__length_49999	unplaced-scaffold	na	na	QPIH02000069.1	=	NW_022587640.1	Primary Assembly	49999	na
PGA_scaffold_72__1_contigs__length_338794	unplaced-scaffold	na	na	QPIH02000078.1	=	NW_022587647.1	Primary Assembly	338794	na
PGA_scaffold_81__1_contigs__length_211163	unplaced-scaffold	na	na	QPIH02000085.1	=	NW_022587656.1	Primary Assembly	211163	na
PGA_scaffold_74__1_contigs__length_124999	unplaced-scaffold	na	na	QPIH02000086.1	=	NW_022587649.1	Primary Assembly	124999	na
PGA_scaffold_79__1_contigs__length_250000	unplaced-scaffold	na	na	QPIH02000091.1	=	NW_022587654.1	Primary Assembly	250000	na
PGA_scaffold_76__1_contigs__length_24999	unplaced-scaffold	na	na	QPIH02000109.1	=	NW_022587651.1	Primary Assembly	24999	na
PGA_scaffold_26__1_contigs__length_27733	unplaced-scaffold	na	na	QPIH02000145.1	=	NW_022587601.1	Primary Assembly	27733	na
PGA_scaffold_27__1_contigs__length_29634	unplaced-scaffold	na	na	QPIH02000146.1	=	NW_022587602.1	Primary Assembly	29634	na
PGA_scaffold_28__1_contigs__length_12481	unplaced-scaffold	na	na	QPIH02000149.1	=	NW_022587603.1	Primary Assembly	12481	na
PGA_scaffold_59__1_contigs__length_156853	unplaced-scaffold	na	na	QPIH02000150.1	=	NW_022587634.1	Primary Assembly	156853	na
PGA_scaffold_29__1_contigs__length_18980	unplaced-scaffold	na	na	QPIH02000151.1	=	NW_022587604.1	Primary Assembly	18980	na
PGA_scaffold_30__1_contigs__length_14551	unplaced-scaffold	na	na	QPIH02000152.1	=	NW_022587605.1	Primary Assembly	14551	na
PGA_scaffold_31__1_contigs__length_8574	unplaced-scaffold	na	na	QPIH02000153.1	=	NW_022587606.1	Primary Assembly	8574	na
PGA_scaffold_32__1_contigs__length_39789	unplaced-scaffold	na	na	QPIH02000154.1	=	NW_022587607.1	Primary Assembly	39789	na
PGA_scaffold_86__1_contigs__length_79406	unplaced-scaffold	na	na	QPIH02000155.1	=	NW_022587661.1	Primary Assembly	79406	na
PGA_scaffold_33__1_contigs__length_76059	unplaced-scaffold	na	na	QPIH02000157.1	=	NW_022587608.1	Primary Assembly	76059	na
PGA_scaffold_34__1_contigs__length_44846	unplaced-scaffold	na	na	QPIH02000158.1	=	NW_022587609.1	Primary Assembly	44846	na
PGA_scaffold_35__1_contigs__length_21418	unplaced-scaffold	na	na	QPIH02000159.1	=	NW_022587610.1	Primary Assembly	21418	na
PGA_scaffold_36__1_contigs__length_39454	unplaced-scaffold	na	na	QPIH02000160.1	=	NW_022587611.1	Primary Assembly	39454	na
PGA_scaffold_37__1_contigs__length_38988	unplaced-scaffold	na	na	QPIH02000164.1	=	NW_022587612.1	Primary Assembly	38988	na
PGA_scaffold_38__1_contigs__length_26983	unplaced-scaffold	na	na	QPIH02000165.1	=	NW_022587613.1	Primary Assembly	26983	na
PGA_scaffold_82__1_contigs__length_105542	unplaced-scaffold	na	na	QPIH02000166.1	=	NW_022587657.1	Primary Assembly	105542	na
PGA_scaffold_39__1_contigs__length_11600	unplaced-scaffold	na	na	QPIH02000167.1	=	NW_022587614.1	Primary Assembly	11600	na
PGA_scaffold_40__1_contigs__length_29911	unplaced-scaffold	na	na	QPIH02000168.1	=	NW_022587615.1	Primary Assembly	29911	na
PGA_scaffold_41__1_contigs__length_15440	unplaced-scaffold	na	na	QPIH02000170.1	=	NW_022587616.1	Primary Assembly	15440	na
PGA_scaffold_23__1_contigs__length_57382	unplaced-scaffold	na	na	QPIH02000171.1	=	NW_022587600.1	Primary Assembly	57382	na
PGA_scaffold_42__1_contigs__length_27664	unplaced-scaffold	na	na	QPIH02000173.1	=	NW_022587617.1	Primary Assembly	27664	na
PGA_scaffold_43__1_contigs__length_65954	unplaced-scaffold	na	na	QPIH02000174.1	=	NW_022587618.1	Primary Assembly	65954	na
PGA_scaffold_44__1_contigs__length_18823	unplaced-scaffold	na	na	QPIH02000175.1	=	NW_022587619.1	Primary Assembly	18823	na
PGA_scaffold_45__1_contigs__length_13269	unplaced-scaffold	na	na	QPIH02000176.1	=	NW_022587620.1	Primary Assembly	13269	na
PGA_scaffold_46__1_contigs__length_70685	unplaced-scaffold	na	na	QPIH02000177.1	=	NW_022587621.1	Primary Assembly	70685	na
PGA_scaffold_47__1_contigs__length_20636	unplaced-scaffold	na	na	QPIH02000178.1	=	NW_022587622.1	Primary Assembly	20636	na
PGA_scaffold_48__1_contigs__length_16692	unplaced-scaffold	na	na	QPIH02000180.1	=	NW_022587623.1	Primary Assembly	16692	na
PGA_scaffold_49__1_contigs__length_47845	unplaced-scaffold	na	na	QPIH02000182.1	=	NW_022587624.1	Primary Assembly	47845	na
PGA_scaffold_50__1_contigs__length_14770	unplaced-scaffold	na	na	QPIH02000183.1	=	NW_022587625.1	Primary Assembly	14770	na
PGA_scaffold_84__1_contigs__length_63317	unplaced-scaffold	na	na	QPIH02000186.1	=	NW_022587659.1	Primary Assembly	63317	na
PGA_scaffold_51__1_contigs__length_27436	unplaced-scaffold	na	na	QPIH02000188.1	=	NW_022587626.1	Primary Assembly	27436	na
PGA_scaffold_52__1_contigs__length_34603	unplaced-scaffold	na	na	QPIH02000189.1	=	NW_022587627.1	Primary Assembly	34603	na
PGA_scaffold_53__1_contigs__length_21246	unplaced-scaffold	na	na	QPIH02000192.1	=	NW_022587628.1	Primary Assembly	21246	na
PGA_scaffold_68__1_contigs__length_43916	unplaced-scaffold	na	na	QPIH02000193.1	=	NW_022587643.1	Primary Assembly	43916	na
PGA_scaffold_54__1_contigs__length_31237	unplaced-scaffold	na	na	QPIH02000194.1	=	NW_022587629.1	Primary Assembly	31237	na
PGA_scaffold_55__1_contigs__length_13176	unplaced-scaffold	na	na	QPIH02000195.1	=	NW_022587630.1	Primary Assembly	13176	na
PGA_scaffold_69__1_contigs__length_24999	unplaced-scaffold	na	na	QPIH02000199.1	=	NW_022587644.1	Primary Assembly	24999	na
PGA_scaffold_67__1_contigs__length_49999	unplaced-scaffold	na	na	QPIH02000203.1	=	NW_022587642.1	Primary Assembly	49999	na
PGA_scaffold_80__1_contigs__length_49999	unplaced-scaffold	na	na	QPIH02000206.1	=	NW_022587655.1	Primary Assembly	49999	na
PGA_scaffold_63__1_contigs__length_250000	unplaced-scaffold	na	na	QPIH02000208.1	=	NW_022587638.1	Primary Assembly	250000	na
PGA_scaffold_60__1_contigs__length_49999	unplaced-scaffold	na	na	QPIH02000213.1	=	NW_022587635.1	Primary Assembly	49999	na
PGA_scaffold_71__1_contigs__length_207192	unplaced-scaffold	na	na	QPIH02000220.1	=	NW_022587646.1	Primary Assembly	207192	na
PGA_scaffold_70__1_contigs__length_49999	unplaced-scaffold	na	na	QPIH02000221.1	=	NW_022587645.1	Primary Assembly	49999	na
PGA_scaffold_85__1_contigs__length_250000	unplaced-scaffold	na	na	QPIH02000226.1	=	NW_022587660.1	Primary Assembly	250000	na
PGA_scaffold_56__1_contigs__length_50000	unplaced-scaffold	na	na	QPIH02000230.1	=	NW_022587631.1	Primary Assembly	50000	na
PGA_scaffold_75__1_contigs__length_250000	unplaced-scaffold	na	na	QPIH02000236.1	=	NW_022587650.1	Primary Assembly	250000	na
PGA_scaffold_57__1_contigs__length_250000	unplaced-scaffold	na	na	QPIH02000237.1	=	NW_022587632.1	Primary Assembly	250000	na
PGA_scaffold_78__1_contigs__length_500000	unplaced-scaffold	na	na	QPIH02000248.1	=	NW_022587653.1	Primary Assembly	500000	na
PGA_scaffold_64__1_contigs__length_250000	unplaced-scaffold	na	na	QPIH02000262.1	=	NW_022587639.1	Primary Assembly	250000	na
PGA_scaffold_58__1_contigs__length_500000	unplaced-scaffold	na	na	QPIH02000268.1	=	NW_022587633.1	Primary Assembly	500000	na
PGA_scaffold_83__1_contigs__length_249999	unplaced-scaffold	na	na	QPIH02000270.1	=	NW_022587658.1	Primary Assembly	249999	na
MT	assembled-molecule	MT	Mitochondrion	na	<>	NC_013089.1	non-nuclear	16635	na