# Assembly name: Pneu_jiro_RU7_V2 # Organism name: Pneumocystis jirovecii RU7 (ascomycete fungi) # Infraspecific name: strain=RU7 # Taxid: 1408657 # BioSample: SAMN02380716 # BioProject: PRJNA223510 # Submitter: Broad Institute # Date: 2015-12-22 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: LFWA01 # Assembly method: Spades v. 2.5.1; Abyss; Spades v. 3.0 # Genome coverage: 241.4x # Sequencing technology: Illumina; Pacific Biosciences # RefSeq category: Representative Genome # GenBank assembly accession: GCA_001477535.1 # RefSeq assembly accession: GCF_001477535.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001477565.1 GCF_001477565.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name supercont1.1 unplaced-scaffold na na LFWA01000001.1 = NW_017264775.1 Primary Assembly 635195 na supercont1.10 unplaced-scaffold na na LFWA01000010.1 = NW_017264784.1 Primary Assembly 423173 na supercont1.11 unplaced-scaffold na na LFWA01000011.1 = NW_017264785.1 Primary Assembly 401875 na supercont1.12 unplaced-scaffold na na LFWA01000012.1 = NW_017264786.1 Primary Assembly 394971 na supercont1.13 unplaced-scaffold na na LFWA01000013.1 = NW_017264787.1 Primary Assembly 364210 na supercont1.14 unplaced-scaffold na na LFWA01000014.1 = NW_017264788.1 Primary Assembly 360840 na supercont1.15 unplaced-scaffold na na LFWA01000015.1 = NW_017264789.1 Primary Assembly 322061 na supercont1.16 unplaced-scaffold na na LFWA01000016.1 = NW_017264790.1 Primary Assembly 301115 na supercont1.17 unplaced-scaffold na na LFWA01000017.1 = NW_017264791.1 Primary Assembly 269959 na supercont1.18 unplaced-scaffold na na LFWA01000018.1 = NW_017264792.1 Primary Assembly 201397 na supercont1.19 unplaced-scaffold na na LFWA01000019.1 = NW_017264793.1 Primary Assembly 73066 na supercont1.2 unplaced-scaffold na na LFWA01000002.1 = NW_017264776.1 Primary Assembly 626993 na supercont1.20 unplaced-scaffold na na LFWA01000020.1 = NW_017264794.1 Primary Assembly 72378 na supercont1.21 unplaced-scaffold na na LFWA01000021.1 = NW_017264795.1 Primary Assembly 16001 na supercont1.22 unplaced-scaffold na na LFWA01000022.1 = NW_017264796.1 Primary Assembly 14383 na supercont1.23 unplaced-scaffold na na LFWA01000023.1 = NW_017264797.1 Primary Assembly 12738 na supercont1.24 unplaced-scaffold na na LFWA01000024.1 = NW_017264798.1 Primary Assembly 12311 na supercont1.25 unplaced-scaffold na na LFWA01000025.1 = NW_017264799.1 Primary Assembly 11721 na supercont1.26 unplaced-scaffold na na LFWA01000026.1 = NW_017264800.1 Primary Assembly 11383 na supercont1.27 unplaced-scaffold na na LFWA01000027.1 = NW_017264801.1 Primary Assembly 10697 na supercont1.28 unplaced-scaffold na na LFWA01000028.1 = NW_017264802.1 Primary Assembly 10586 na supercont1.29 unplaced-scaffold na na LFWA01000029.1 = NW_017264803.1 Primary Assembly 10306 na supercont1.3 unplaced-scaffold na na LFWA01000003.1 = NW_017264777.1 Primary Assembly 621393 na supercont1.30 unplaced-scaffold na na LFWA01000030.1 = NW_017264804.1 Primary Assembly 9049 na supercont1.31 unplaced-scaffold na na LFWA01000031.1 = NW_017264805.1 Primary Assembly 8531 na supercont1.32 unplaced-scaffold na na LFWA01000032.1 = NW_017264806.1 Primary Assembly 8207 na supercont1.33 unplaced-scaffold na na LFWA01000033.1 = NW_017264807.1 Primary Assembly 7405 na supercont1.34 unplaced-scaffold na na LFWA01000034.1 = NW_017264808.1 Primary Assembly 7340 na supercont1.35 unplaced-scaffold na na LFWA01000035.1 = NW_017264809.1 Primary Assembly 7306 na supercont1.36 unplaced-scaffold na na LFWA01000036.1 = NW_017264810.1 Primary Assembly 7197 na supercont1.37 unplaced-scaffold na na LFWA01000037.1 = NW_017264811.1 Primary Assembly 6936 na supercont1.38 unplaced-scaffold na na LFWA01000038.1 = NW_017264812.1 Primary Assembly 6857 na supercont1.39 unplaced-scaffold na na LFWA01000039.1 = NW_017264813.1 Primary Assembly 6830 na supercont1.4 unplaced-scaffold na na LFWA01000004.1 = NW_017264778.1 Primary Assembly 602696 na supercont1.40 unplaced-scaffold na na LFWA01000040.1 = NW_017264814.1 Primary Assembly 6811 na supercont1.41 unplaced-scaffold na na LFWA01000041.1 = NW_017264815.1 Primary Assembly 6744 na supercont1.42 unplaced-scaffold na na LFWA01000042.1 = NW_017264816.1 Primary Assembly 6636 na supercont1.43 unplaced-scaffold na na LFWA01000043.1 = NW_017264817.1 Primary Assembly 6294 na supercont1.44 unplaced-scaffold na na LFWA01000044.1 = NW_017264818.1 Primary Assembly 6156 na supercont1.45 unplaced-scaffold na na LFWA01000045.1 = NW_017264819.1 Primary Assembly 5741 na supercont1.46 unplaced-scaffold na na LFWA01000046.1 = NW_017264820.1 Primary Assembly 5715 na supercont1.47 unplaced-scaffold na na LFWA01000047.1 = NW_017264821.1 Primary Assembly 5222 na supercont1.48 unplaced-scaffold na na LFWA01000048.1 = NW_017264822.1 Primary Assembly 5171 na supercont1.49 unplaced-scaffold na na LFWA01000049.1 = NW_017264823.1 Primary Assembly 4467 na supercont1.5 unplaced-scaffold na na LFWA01000005.1 = NW_017264779.1 Primary Assembly 557778 na supercont1.50 unplaced-scaffold na na LFWA01000050.1 = NW_017264824.1 Primary Assembly 4452 na supercont1.51 unplaced-scaffold na na LFWA01000051.1 = NW_017264825.1 Primary Assembly 4139 na supercont1.52 unplaced-scaffold na na LFWA01000052.1 = NW_017264826.1 Primary Assembly 4130 na supercont1.53 unplaced-scaffold na na LFWA01000053.1 = NW_017264827.1 Primary Assembly 3974 na supercont1.54 unplaced-scaffold na na LFWA01000054.1 = NW_017264828.1 Primary Assembly 3872 na supercont1.55 unplaced-scaffold na na LFWA01000055.1 = NW_017264829.1 Primary Assembly 3841 na supercont1.56 unplaced-scaffold na na LFWA01000056.1 = NW_017264830.1 Primary Assembly 3531 na supercont1.57 unplaced-scaffold na na LFWA01000057.1 = NW_017264831.1 Primary Assembly 3432 na supercont1.58 unplaced-scaffold na na LFWA01000058.1 = NW_017264832.1 Primary Assembly 3395 na supercont1.59 unplaced-scaffold na na LFWA01000059.1 = NW_017264833.1 Primary Assembly 3389 na supercont1.6 unplaced-scaffold na na LFWA01000006.1 = NW_017264780.1 Primary Assembly 518165 na supercont1.60 unplaced-scaffold na na LFWA01000060.1 = NW_017264834.1 Primary Assembly 3384 na supercont1.61 unplaced-scaffold na na LFWA01000061.1 = NW_017264835.1 Primary Assembly 3382 na supercont1.62 unplaced-scaffold na na LFWA01000062.1 = NW_017264836.1 Primary Assembly 3342 na supercont1.63 unplaced-scaffold na na LFWA01000063.1 = NW_017264837.1 Primary Assembly 3304 na supercont1.64 unplaced-scaffold na na LFWA01000064.1 = NW_017264838.1 Primary Assembly 3245 na supercont1.65 unplaced-scaffold na na LFWA01000065.1 = NW_017264839.1 Primary Assembly 3169 na supercont1.66 unplaced-scaffold na na LFWA01000066.1 = NW_017264840.1 Primary Assembly 3140 na supercont1.67 unplaced-scaffold na na LFWA01000067.1 = NW_017264841.1 Primary Assembly 3100 na supercont1.68 unplaced-scaffold na na LFWA01000068.1 = NW_017264842.1 Primary Assembly 2459 na supercont1.69 unplaced-scaffold na na LFWA01000069.1 = NW_017264843.1 Primary Assembly 2247 na supercont1.7 unplaced-scaffold na na LFWA01000007.1 = NW_017264781.1 Primary Assembly 454917 na supercont1.70 unplaced-scaffold na na LFWA01000070.1 = NW_017264844.1 Primary Assembly 2237 na supercont1.8 unplaced-scaffold na na LFWA01000008.1 = NW_017264782.1 Primary Assembly 454558 na supercont1.9 unplaced-scaffold na na LFWA01000009.1 = NW_017264783.1 Primary Assembly 423595 na