# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.H.M.1B.2 # Taxid: 2209 # BioSample: SAMN02708953 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPV01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 43.6x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979765.1 # RefSeq assembly accession: GCF_000979765.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979795.1 GCF_000979795.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold32_1_size41660-refined unplaced-scaffold na na JJPV01000001.1 = NZ_JJPV01000001.1 Primary Assembly 41660 na scaffold15_1_size66421-refined unplaced-scaffold na na JJPV01000002.1 = NZ_JJPV01000002.1 Primary Assembly 66321 na scaffold109_1_size4336-refined unplaced-scaffold na na JJPV01000003.1 = NZ_JJPV01000003.1 Primary Assembly 4336 na scaffold35_1_size38850-refined unplaced-scaffold na na JJPV01000004.1 = NZ_JJPV01000004.1 Primary Assembly 38850 na scaffold17_1_size102569-refined unplaced-scaffold na na JJPV01000005.1 = NZ_JJPV01000005.1 Primary Assembly 102144 na scaffold96_1_size7536-refined unplaced-scaffold na na JJPV01000006.1 = NZ_JJPV01000006.1 Primary Assembly 7536 na scaffold34_1_size39181-refined unplaced-scaffold na na JJPV01000007.1 = NZ_JJPV01000007.1 Primary Assembly 39181 na scaffold19_1_size51870-refined unplaced-scaffold na na JJPV01000008.1 = NZ_JJPV01000008.1 Primary Assembly 51238 na scaffold49_1_size28394-refined unplaced-scaffold na na JJPV01000009.1 = NZ_JJPV01000009.1 Primary Assembly 28394 na scaffold76_1_size15876-refined unplaced-scaffold na na JJPV01000010.1 = NZ_JJPV01000010.1 Primary Assembly 15713 na scaffold75_1_size16309-refined unplaced-scaffold na na JJPV01000011.1 = NZ_JJPV01000011.1 Primary Assembly 16309 na scaffold114_1_size3022-refined unplaced-scaffold na na JJPV01000012.1 = NZ_JJPV01000012.1 Primary Assembly 3022 na scaffold88_1_size10970-refined unplaced-scaffold na na JJPV01000013.1 = NZ_JJPV01000013.1 Primary Assembly 10824 na scaffold119_1_size2738-refined unplaced-scaffold na na JJPV01000014.1 = NZ_JJPV01000014.1 Primary Assembly 2738 na scaffold84_1_size13308-refined unplaced-scaffold na na JJPV01000015.1 = NZ_JJPV01000015.1 Primary Assembly 13284 na scaffold134_1_size832-refined unplaced-scaffold na na JJPV01000016.1 = NZ_JJPV01000016.1 Primary Assembly 832 na scaffold10_1_size77631-refined unplaced-scaffold na na JJPV01000017.1 = NZ_JJPV01000017.1 Primary Assembly 77321 na scaffold93_1_size8673-refined unplaced-scaffold na na JJPV01000018.1 = NZ_JJPV01000018.1 Primary Assembly 8673 na scaffold22_1_size50216-refined unplaced-scaffold na na JJPV01000019.1 = NZ_JJPV01000019.1 Primary Assembly 50107 na scaffold72_1_size16692-refined unplaced-scaffold na na JJPV01000020.1 = NZ_JJPV01000020.1 Primary Assembly 16692 na scaffold1_1_size114104-refined unplaced-scaffold na na JJPV01000021.1 = NZ_JJPV01000021.1 Primary Assembly 113909 na scaffold80_1_size14195-refined unplaced-scaffold na na JJPV01000022.1 = NZ_JJPV01000022.1 Primary Assembly 14195 na scaffold12_1_size75324-refined unplaced-scaffold na na JJPV01000023.1 = NZ_JJPV01000023.1 Primary Assembly 75224 na scaffold123_1_size1948-refined unplaced-scaffold na na JJPV01000024.1 = NZ_JJPV01000024.1 Primary Assembly 1948 na scaffold94_1_size8419-refined unplaced-scaffold na na JJPV01000025.1 = NZ_JJPV01000025.1 Primary Assembly 8419 na scaffold26_1_size43768-refined unplaced-scaffold na na JJPV01000026.1 = NZ_JJPV01000026.1 Primary Assembly 43768 na scaffold130_1_size1231-refined unplaced-scaffold na na JJPV01000027.1 = NZ_JJPV01000027.1 Primary Assembly 1231 na scaffold105_1_size5506-refined unplaced-scaffold na na JJPV01000028.1 = NZ_JJPV01000028.1 Primary Assembly 5506 na scaffold63_1_size21321-refined unplaced-scaffold na na JJPV01000029.1 = NZ_JJPV01000029.1 Primary Assembly 21321 na scaffold118_1_size2744-refined unplaced-scaffold na na JJPV01000030.1 = NZ_JJPV01000030.1 Primary Assembly 2744 na scaffold16_1_size65383-refined unplaced-scaffold na na JJPV01000031.1 = NZ_JJPV01000031.1 Primary Assembly 65212 na scaffold113_1_size3067-refined unplaced-scaffold na na JJPV01000032.1 = NZ_JJPV01000032.1 Primary Assembly 3067 na scaffold117_1_size2868-refined unplaced-scaffold na na JJPV01000033.1 = NZ_JJPV01000033.1 Primary Assembly 2868 na scaffold106_1_size5094-refined unplaced-scaffold na na JJPV01000034.1 = NZ_JJPV01000034.1 Primary Assembly 5094 na scaffold23_1_size78854-refined unplaced-scaffold na na JJPV01000035.1 = NZ_JJPV01000035.1 Primary Assembly 78512 na scaffold3_1_size230183-refined unplaced-scaffold na na JJPV01000036.1 = NZ_JJPV01000036.1 Primary Assembly 229421 na scaffold81_1_size13837-refined unplaced-scaffold na na JJPV01000037.1 = NZ_JJPV01000037.1 Primary Assembly 13837 na scaffold27_1_size50411-refined unplaced-scaffold na na JJPV01000038.1 = NZ_JJPV01000038.1 Primary Assembly 50149 na scaffold31_1_size42015-refined unplaced-scaffold na na JJPV01000039.1 = NZ_JJPV01000039.1 Primary Assembly 42015 na scaffold74_1_size20180-refined unplaced-scaffold na na JJPV01000040.1 = NZ_JJPV01000040.1 Primary Assembly 20080 na scaffold40_1_size34233-refined unplaced-scaffold na na JJPV01000041.1 = NZ_JJPV01000041.1 Primary Assembly 34011 na scaffold90_1_size10079-refined unplaced-scaffold na na JJPV01000042.1 = NZ_JJPV01000042.1 Primary Assembly 10079 na scaffold47_1_size29012-refined unplaced-scaffold na na JJPV01000043.1 = NZ_JJPV01000043.1 Primary Assembly 28841 na scaffold121_1_size2266-refined unplaced-scaffold na na JJPV01000044.1 = NZ_JJPV01000044.1 Primary Assembly 2266 na scaffold68_1_size18426-refined unplaced-scaffold na na JJPV01000045.1 = NZ_JJPV01000045.1 Primary Assembly 18426 na scaffold28_1_size52315-refined unplaced-scaffold na na JJPV01000046.1 = NZ_JJPV01000046.1 Primary Assembly 52115 na scaffold64_1_size21298-refined unplaced-scaffold na na JJPV01000047.1 = NZ_JJPV01000047.1 Primary Assembly 21298 na scaffold21_1_size54735-refined unplaced-scaffold na na JJPV01000048.1 = NZ_JJPV01000048.1 Primary Assembly 54448 na scaffold82_1_size13537-refined unplaced-scaffold na na JJPV01000049.1 = NZ_JJPV01000049.1 Primary Assembly 13437 na scaffold71_1_size16891-refined unplaced-scaffold na na JJPV01000050.1 = NZ_JJPV01000050.1 Primary Assembly 16891 na scaffold2_1_size141989-refined unplaced-scaffold na na JJPV01000051.1 = NZ_JJPV01000051.1 Primary Assembly 141484 na scaffold48_1_size28917-refined unplaced-scaffold na na JJPV01000052.1 = NZ_JJPV01000052.1 Primary Assembly 28740 na scaffold133_1_size922-refined unplaced-scaffold na na JJPV01000053.1 = NZ_JJPV01000053.1 Primary Assembly 922 na scaffold58_1_size23992-refined unplaced-scaffold na na JJPV01000054.1 = NZ_JJPV01000054.1 Primary Assembly 23992 na scaffold24_1_size46139-refined unplaced-scaffold na na JJPV01000055.1 = NZ_JJPV01000055.1 Primary Assembly 46124 na scaffold62_1_size21548-refined unplaced-scaffold na na JJPV01000056.1 = NZ_JJPV01000056.1 Primary Assembly 21548 na scaffold70_1_size17208-refined unplaced-scaffold na na JJPV01000057.1 = NZ_JJPV01000057.1 Primary Assembly 17208 na scaffold18_1_size54280-refined unplaced-scaffold na na JJPV01000058.1 = NZ_JJPV01000058.1 Primary Assembly 54280 na scaffold43_1_size32352-refined unplaced-scaffold na na JJPV01000059.1 = NZ_JJPV01000059.1 Primary Assembly 32352 na scaffold87_1_size11622-refined unplaced-scaffold na na JJPV01000060.1 = NZ_JJPV01000060.1 Primary Assembly 11622 na scaffold89_1_size10706-refined unplaced-scaffold na na JJPV01000061.1 = NZ_JJPV01000061.1 Primary Assembly 10706 na scaffold50_1_size53692-refined unplaced-scaffold na na JJPV01000062.1 = NZ_JJPV01000062.1 Primary Assembly 51027 na scaffold104_1_size5557-refined unplaced-scaffold na na JJPV01000063.1 = NZ_JJPV01000063.1 Primary Assembly 5557 na scaffold57_1_size24357-refined unplaced-scaffold na na JJPV01000064.1 = NZ_JJPV01000064.1 Primary Assembly 24275 na scaffold44_1_size53229-refined unplaced-scaffold na na JJPV01000065.1 = NZ_JJPV01000065.1 Primary Assembly 53229 na scaffold36_1_size38714-refined unplaced-scaffold na na JJPV01000066.1 = NZ_JJPV01000066.1 Primary Assembly 38281 na scaffold8_1_size163226-refined unplaced-scaffold na na JJPV01000067.1 = NZ_JJPV01000067.1 Primary Assembly 162621 na scaffold61_1_size23150-refined unplaced-scaffold na na JJPV01000068.1 = NZ_JJPV01000068.1 Primary Assembly 23050 na scaffold53_1_size25940-refined unplaced-scaffold na na JJPV01000069.1 = NZ_JJPV01000069.1 Primary Assembly 25940 na scaffold126_1_size1740-refined unplaced-scaffold na na JJPV01000070.1 = NZ_JJPV01000070.1 Primary Assembly 1740 na scaffold103_1_size5716-refined unplaced-scaffold na na JJPV01000071.1 = NZ_JJPV01000071.1 Primary Assembly 5516 na scaffold85_1_size12089-refined unplaced-scaffold na na JJPV01000072.1 = NZ_JJPV01000072.1 Primary Assembly 12061 na scaffold95_1_size8347-refined unplaced-scaffold na na JJPV01000073.1 = NZ_JJPV01000073.1 Primary Assembly 8347 na scaffold111_1_size3414-refined unplaced-scaffold na na JJPV01000074.1 = NZ_JJPV01000074.1 Primary Assembly 3314 na scaffold20_1_size51776-refined unplaced-scaffold na na JJPV01000075.1 = NZ_JJPV01000075.1 Primary Assembly 51163 na scaffold4_1_size96208-refined unplaced-scaffold na na JJPV01000076.1 = NZ_JJPV01000076.1 Primary Assembly 95896 na scaffold14_1_size74487-refined unplaced-scaffold na na JJPV01000077.1 = NZ_JJPV01000077.1 Primary Assembly 74221 na scaffold60_1_size23366-refined unplaced-scaffold na na JJPV01000078.1 = NZ_JJPV01000078.1 Primary Assembly 23284 na scaffold127_1_size1565-refined unplaced-scaffold na na JJPV01000079.1 = NZ_JJPV01000079.1 Primary Assembly 1565 na scaffold136_1_size790-refined unplaced-scaffold na na JJPV01000080.1 = NZ_JJPV01000080.1 Primary Assembly 790 na scaffold98_1_size6628-refined unplaced-scaffold na na JJPV01000081.1 = NZ_JJPV01000081.1 Primary Assembly 6628 na scaffold102_1_size6049-refined unplaced-scaffold na na JJPV01000082.1 = NZ_JJPV01000082.1 Primary Assembly 6049 na scaffold122_1_size2066-refined unplaced-scaffold na na JJPV01000083.1 = NZ_JJPV01000083.1 Primary Assembly 2066 na scaffold29_1_size42801-refined unplaced-scaffold na na JJPV01000084.1 = NZ_JJPV01000084.1 Primary Assembly 42701 na scaffold30_1_size53018-refined unplaced-scaffold na na JJPV01000085.1 = NZ_JJPV01000085.1 Primary Assembly 52939 na scaffold69_1_size17587-refined unplaced-scaffold na na JJPV01000086.1 = NZ_JJPV01000086.1 Primary Assembly 17587 na scaffold101_1_size6327-refined unplaced-scaffold na na JJPV01000087.1 = NZ_JJPV01000087.1 Primary Assembly 6327 na scaffold38_1_size36369-refined unplaced-scaffold na na JJPV01000088.1 = NZ_JJPV01000088.1 Primary Assembly 36269 na scaffold54_1_size25574-refined unplaced-scaffold na na JJPV01000089.1 = NZ_JJPV01000089.1 Primary Assembly 25574 na scaffold13_1_size138620-refined unplaced-scaffold na na JJPV01000090.1 = NZ_JJPV01000090.1 Primary Assembly 138013 na scaffold128_1_size1534-refined unplaced-scaffold na na JJPV01000091.1 = NZ_JJPV01000091.1 Primary Assembly 1534 na scaffold110_1_size3651-refined unplaced-scaffold na na JJPV01000092.1 = NZ_JJPV01000092.1 Primary Assembly 3651 na scaffold132_1_size1097-refined unplaced-scaffold na na JJPV01000093.1 = NZ_JJPV01000093.1 Primary Assembly 1097 na scaffold108_1_size4273-refined unplaced-scaffold na na JJPV01000094.1 = NZ_JJPV01000094.1 Primary Assembly 4199 na scaffold52_1_size26643-refined unplaced-scaffold na na JJPV01000095.1 = NZ_JJPV01000095.1 Primary Assembly 26643 na scaffold65_1_size20528-refined unplaced-scaffold na na JJPV01000096.1 = NZ_JJPV01000096.1 Primary Assembly 20528 na scaffold51_1_size26813-refined unplaced-scaffold na na JJPV01000097.1 = NZ_JJPV01000097.1 Primary Assembly 26813 na scaffold73_1_size16504-refined unplaced-scaffold na na JJPV01000098.1 = NZ_JJPV01000098.1 Primary Assembly 16504 na scaffold33_1_size56739-refined unplaced-scaffold na na JJPV01000099.1 = NZ_JJPV01000099.1 Primary Assembly 56724 na scaffold135_1_size818-refined unplaced-scaffold na na JJPV01000100.1 = NZ_JJPV01000100.1 Primary Assembly 818 na scaffold91_1_size9745-refined unplaced-scaffold na na JJPV01000101.1 = NZ_JJPV01000101.1 Primary Assembly 9745 na scaffold25_1_size44714-refined unplaced-scaffold na na JJPV01000102.1 = NZ_JJPV01000102.1 Primary Assembly 44614 na scaffold55_1_size24595-refined unplaced-scaffold na na JJPV01000103.1 = NZ_JJPV01000103.1 Primary Assembly 24595 na scaffold92_1_size9024-refined unplaced-scaffold na na JJPV01000104.1 = NZ_JJPV01000104.1 Primary Assembly 9024 na scaffold78_1_size14555-refined unplaced-scaffold na na JJPV01000105.1 = NZ_JJPV01000105.1 Primary Assembly 14555 na scaffold112_1_size3116-refined unplaced-scaffold na na JJPV01000106.1 = NZ_JJPV01000106.1 Primary Assembly 3116 na scaffold100_1_size6512-refined unplaced-scaffold na na JJPV01000107.1 = NZ_JJPV01000107.1 Primary Assembly 6512 na scaffold67_1_size18435-refined unplaced-scaffold na na JJPV01000108.1 = NZ_JJPV01000108.1 Primary Assembly 18435 na scaffold129_1_size1257-refined unplaced-scaffold na na JJPV01000109.1 = NZ_JJPV01000109.1 Primary Assembly 1257 na scaffold66_1_size21166-refined unplaced-scaffold na na JJPV01000110.1 = NZ_JJPV01000110.1 Primary Assembly 21166 na scaffold77_1_size15760-refined unplaced-scaffold na na JJPV01000111.1 = NZ_JJPV01000111.1 Primary Assembly 15680 na scaffold42_1_size32404-refined unplaced-scaffold na na JJPV01000112.1 = NZ_JJPV01000112.1 Primary Assembly 32287 na scaffold124_1_size1787-refined unplaced-scaffold na na JJPV01000113.1 = NZ_JJPV01000113.1 Primary Assembly 1654 na scaffold97_1_size7335-refined unplaced-scaffold na na JJPV01000114.1 = NZ_JJPV01000114.1 Primary Assembly 7235 na scaffold46_1_size37312-refined unplaced-scaffold na na JJPV01000115.1 = NZ_JJPV01000115.1 Primary Assembly 36605 na scaffold131_1_size1144-refined unplaced-scaffold na na JJPV01000116.1 = NZ_JJPV01000116.1 Primary Assembly 1144 na scaffold115_1_size2985-refined unplaced-scaffold na na JJPV01000117.1 = NZ_JJPV01000117.1 Primary Assembly 2985 na scaffold107_1_size4787-refined unplaced-scaffold na na JJPV01000118.1 = NZ_JJPV01000118.1 Primary Assembly 4667 na scaffold79_1_size14280-refined unplaced-scaffold na na JJPV01000119.1 = NZ_JJPV01000119.1 Primary Assembly 14280 na scaffold41_1_size39358-refined unplaced-scaffold na na JJPV01000120.1 = NZ_JJPV01000120.1 Primary Assembly 39358 na scaffold116_1_size2960-refined unplaced-scaffold na na JJPV01000121.1 = NZ_JJPV01000121.1 Primary Assembly 2960 na scaffold39_1_size35028-refined unplaced-scaffold na na JJPV01000122.1 = NZ_JJPV01000122.1 Primary Assembly 35028 na scaffold120_1_size2353-refined unplaced-scaffold na na JJPV01000123.1 = NZ_JJPV01000123.1 Primary Assembly 2353 na scaffold45_1_size30804-refined unplaced-scaffold na na JJPV01000124.1 = NZ_JJPV01000124.1 Primary Assembly 30634 na scaffold83_1_size13488-refined unplaced-scaffold na na JJPV01000125.1 = NZ_JJPV01000125.1 Primary Assembly 13316 na scaffold56_1_size24394-refined unplaced-scaffold na na JJPV01000126.1 = NZ_JJPV01000126.1 Primary Assembly 24394 na scaffold9_1_size80854-refined unplaced-scaffold na na JJPV01000127.1 = NZ_JJPV01000127.1 Primary Assembly 80764 na scaffold125_1_size1781-refined unplaced-scaffold na na JJPV01000128.1 = NZ_JJPV01000128.1 Primary Assembly 1781 na scaffold86_1_size21365-refined unplaced-scaffold na na JJPV01000129.1 = NZ_JJPV01000129.1 Primary Assembly 21365 na scaffold99_1_size6528-refined unplaced-scaffold na na JJPV01000130.1 = NZ_JJPV01000130.1 Primary Assembly 6528 na scaffold59_1_size23531-refined unplaced-scaffold na na JJPV01000131.1 = NZ_JJPV01000131.1 Primary Assembly 23431 na scaffold7_1_size89063-refined unplaced-scaffold na na JJPV01000132.1 = NZ_JJPV01000132.1 Primary Assembly 88822 na scaffold37_1_size36894-refined unplaced-scaffold na na JJPV01000133.1 = NZ_JJPV01000133.1 Primary Assembly 36894 na scaffold6_1_size92812-refined unplaced-scaffold na na JJPV01000134.1 = NZ_JJPV01000134.1 Primary Assembly 92346 na scaffold5_1_size91669-refined unplaced-scaffold na na JJPV01000135.1 = NZ_JJPV01000135.1 Primary Assembly 91459 na scaffold11_1_size76028-refined unplaced-scaffold na na JJPV01000136.1 = NZ_JJPV01000136.1 Primary Assembly 76028 na