# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.F.T.1A.4 # Taxid: 2209 # BioSample: SAMN02708949 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPK01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 43.2x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000979635.1 # RefSeq assembly accession: GCF_000979635.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979645.1 GCF_000979645.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold50_1_size28358-refined unplaced-scaffold na na JJPK01000001.1 = NZ_JJPK01000001.1 Primary Assembly 28358 na scaffold129_1_size1243-refined unplaced-scaffold na na JJPK01000002.1 = NZ_JJPK01000002.1 Primary Assembly 1243 na scaffold139_1_size934-refined unplaced-scaffold na na JJPK01000003.1 = NZ_JJPK01000003.1 Primary Assembly 934 na scaffold66_1_size20455-refined unplaced-scaffold na na JJPK01000004.1 = NZ_JJPK01000004.1 Primary Assembly 20355 na scaffold96_1_size7536-refined unplaced-scaffold na na JJPK01000005.1 = NZ_JJPK01000005.1 Primary Assembly 7536 na scaffold22_1_size46405-refined unplaced-scaffold na na JJPK01000006.1 = NZ_JJPK01000006.1 Primary Assembly 46022 na scaffold100_1_size6628-refined unplaced-scaffold na na JJPK01000007.1 = NZ_JJPK01000007.1 Primary Assembly 6628 na scaffold3_1_size196871-refined unplaced-scaffold na na JJPK01000008.1 = NZ_JJPK01000008.1 Primary Assembly 196060 na scaffold76_1_size16894-refined unplaced-scaffold na na JJPK01000009.1 = NZ_JJPK01000009.1 Primary Assembly 16894 na scaffold60_1_size23147-refined unplaced-scaffold na na JJPK01000010.1 = NZ_JJPK01000010.1 Primary Assembly 23047 na scaffold29_1_size42155-refined unplaced-scaffold na na JJPK01000011.1 = NZ_JJPK01000011.1 Primary Assembly 42160 na scaffold87_1_size21093-refined unplaced-scaffold na na JJPK01000012.1 = NZ_JJPK01000012.1 Primary Assembly 21093 na scaffold68_1_size21166-refined unplaced-scaffold na na JJPK01000013.1 = NZ_JJPK01000013.1 Primary Assembly 21247 na scaffold1_1_size392908-refined unplaced-scaffold na na JJPK01000014.1 = NZ_JJPK01000014.1 Primary Assembly 391059 na scaffold53_1_size26815-refined unplaced-scaffold na na JJPK01000015.1 = NZ_JJPK01000015.1 Primary Assembly 26815 na scaffold28_1_size52964-refined unplaced-scaffold na na JJPK01000016.1 = NZ_JJPK01000016.1 Primary Assembly 52885 na scaffold95_1_size8413-refined unplaced-scaffold na na JJPK01000017.1 = NZ_JJPK01000017.1 Primary Assembly 8413 na scaffold37_1_size35258-refined unplaced-scaffold na na JJPK01000018.1 = NZ_JJPK01000018.1 Primary Assembly 35258 na scaffold86_1_size12029-refined unplaced-scaffold na na JJPK01000019.1 = NZ_JJPK01000019.1 Primary Assembly 12001 na scaffold27_1_size42784-refined unplaced-scaffold na na JJPK01000020.1 = NZ_JJPK01000020.1 Primary Assembly 42684 na scaffold112_1_size3175-refined unplaced-scaffold na na JJPK01000021.1 = NZ_JJPK01000021.1 Primary Assembly 3175 na scaffold98_1_size7013-refined unplaced-scaffold na na JJPK01000022.1 = NZ_JJPK01000022.1 Primary Assembly 7013 na scaffold55_1_size24620-refined unplaced-scaffold na na JJPK01000023.1 = NZ_JJPK01000023.1 Primary Assembly 24620 na scaffold71_1_size18433-refined unplaced-scaffold na na JJPK01000024.1 = NZ_JJPK01000024.1 Primary Assembly 18433 na scaffold130_1_size1231-refined unplaced-scaffold na na JJPK01000025.1 = NZ_JJPK01000025.1 Primary Assembly 1231 na scaffold99_1_size6707-refined unplaced-scaffold na na JJPK01000026.1 = NZ_JJPK01000026.1 Primary Assembly 6707 na scaffold138_1_size533-refined unplaced-scaffold na na JJPK01000027.1 = NZ_JJPK01000027.1 Primary Assembly 533 na scaffold63_1_size21321-refined unplaced-scaffold na na JJPK01000028.1 = NZ_JJPK01000028.1 Primary Assembly 21321 na scaffold82_1_size13898-refined unplaced-scaffold na na JJPK01000029.1 = NZ_JJPK01000029.1 Primary Assembly 13789 na scaffold116_1_size3022-refined unplaced-scaffold na na JJPK01000030.1 = NZ_JJPK01000030.1 Primary Assembly 3022 na scaffold33_1_size39184-refined unplaced-scaffold na na JJPK01000031.1 = NZ_JJPK01000031.1 Primary Assembly 39184 na scaffold102_1_size6327-refined unplaced-scaffold na na JJPK01000032.1 = NZ_JJPK01000032.1 Primary Assembly 6327 na scaffold122_1_size2353-refined unplaced-scaffold na na JJPK01000033.1 = NZ_JJPK01000033.1 Primary Assembly 2353 na scaffold69_1_size19038-refined unplaced-scaffold na na JJPK01000034.1 = NZ_JJPK01000034.1 Primary Assembly 19038 na scaffold91_1_size10206-refined unplaced-scaffold na na JJPK01000035.1 = NZ_JJPK01000035.1 Primary Assembly 10206 na scaffold137_1_size718-refined unplaced-scaffold na na JJPK01000036.1 = NZ_JJPK01000036.1 Primary Assembly 718 na scaffold125_1_size2012-refined unplaced-scaffold na na JJPK01000037.1 = NZ_JJPK01000037.1 Primary Assembly 2012 na scaffold9_1_size73618-refined unplaced-scaffold na na JJPK01000038.1 = NZ_JJPK01000038.1 Primary Assembly 73503 na scaffold5_1_size89422-refined unplaced-scaffold na na JJPK01000039.1 = NZ_JJPK01000039.1 Primary Assembly 89272 na scaffold25_1_size43757-refined unplaced-scaffold na na JJPK01000040.1 = NZ_JJPK01000040.1 Primary Assembly 43757 na scaffold108_1_size3328-refined unplaced-scaffold na na JJPK01000041.1 = NZ_JJPK01000041.1 Primary Assembly 3328 na scaffold114_1_size3031-refined unplaced-scaffold na na JJPK01000042.1 = NZ_JJPK01000042.1 Primary Assembly 3031 na scaffold136_1_size818-refined unplaced-scaffold na na JJPK01000043.1 = NZ_JJPK01000043.1 Primary Assembly 818 na scaffold72_1_size17718-refined unplaced-scaffold na na JJPK01000044.1 = NZ_JJPK01000044.1 Primary Assembly 17604 na scaffold106_1_size4125-refined unplaced-scaffold na na JJPK01000045.1 = NZ_JJPK01000045.1 Primary Assembly 4125 na scaffold6_1_size162937-refined unplaced-scaffold na na JJPK01000046.1 = NZ_JJPK01000046.1 Primary Assembly 162276 na scaffold131_1_size1145-refined unplaced-scaffold na na JJPK01000047.1 = NZ_JJPK01000047.1 Primary Assembly 1145 na scaffold26_1_size43306-refined unplaced-scaffold na na JJPK01000048.1 = NZ_JJPK01000048.1 Primary Assembly 43111 na scaffold80_1_size14352-refined unplaced-scaffold na na JJPK01000049.1 = NZ_JJPK01000049.1 Primary Assembly 14352 na scaffold24_1_size44714-refined unplaced-scaffold na na JJPK01000050.1 = NZ_JJPK01000050.1 Primary Assembly 44614 na scaffold58_1_size23992-refined unplaced-scaffold na na JJPK01000051.1 = NZ_JJPK01000051.1 Primary Assembly 23992 na scaffold51_1_size27289-refined unplaced-scaffold na na JJPK01000052.1 = NZ_JJPK01000052.1 Primary Assembly 27295 na scaffold44_1_size53342-refined unplaced-scaffold na na JJPK01000053.1 = NZ_JJPK01000053.1 Primary Assembly 53342 na scaffold117_1_size2985-refined unplaced-scaffold na na JJPK01000054.1 = NZ_JJPK01000054.1 Primary Assembly 2985 na scaffold85_1_size20946-refined unplaced-scaffold na na JJPK01000055.1 = NZ_JJPK01000055.1 Primary Assembly 20846 na scaffold46_1_size29598-refined unplaced-scaffold na na JJPK01000056.1 = NZ_JJPK01000056.1 Primary Assembly 29598 na scaffold101_1_size6528-refined unplaced-scaffold na na JJPK01000057.1 = NZ_JJPK01000057.1 Primary Assembly 6528 na scaffold14_1_size88135-refined unplaced-scaffold na na JJPK01000058.1 = NZ_JJPK01000058.1 Primary Assembly 87654 na scaffold30_1_size41662-refined unplaced-scaffold na na JJPK01000059.1 = NZ_JJPK01000059.1 Primary Assembly 41662 na scaffold54_1_size25573-refined unplaced-scaffold na na JJPK01000060.1 = NZ_JJPK01000060.1 Primary Assembly 25573 na scaffold12_1_size65413-refined unplaced-scaffold na na JJPK01000061.1 = NZ_JJPK01000061.1 Primary Assembly 65206 na scaffold133_1_size1084-refined unplaced-scaffold na na JJPK01000062.1 = NZ_JJPK01000062.1 Primary Assembly 1084 na scaffold39_1_size35015-refined unplaced-scaffold na na JJPK01000063.1 = NZ_JJPK01000063.1 Primary Assembly 35015 na scaffold79_1_size15892-refined unplaced-scaffold na na JJPK01000064.1 = NZ_JJPK01000064.1 Primary Assembly 15892 na scaffold57_1_size24314-refined unplaced-scaffold na na JJPK01000065.1 = NZ_JJPK01000065.1 Primary Assembly 24314 na scaffold20_1_size46882-refined unplaced-scaffold na na JJPK01000066.1 = NZ_JJPK01000066.1 Primary Assembly 46882 na scaffold52_1_size27158-refined unplaced-scaffold na na JJPK01000067.1 = NZ_JJPK01000067.1 Primary Assembly 26922 na scaffold115_1_size3022-refined unplaced-scaffold na na JJPK01000068.1 = NZ_JJPK01000068.1 Primary Assembly 3022 na scaffold93_1_size8687-refined unplaced-scaffold na na JJPK01000069.1 = NZ_JJPK01000069.1 Primary Assembly 8687 na scaffold109_1_size3213-refined unplaced-scaffold na na JJPK01000070.1 = NZ_JJPK01000070.1 Primary Assembly 3131 na scaffold126_1_size1740-refined unplaced-scaffold na na JJPK01000071.1 = NZ_JJPK01000071.1 Primary Assembly 1740 na scaffold111_1_size3197-refined unplaced-scaffold na na JJPK01000072.1 = NZ_JJPK01000072.1 Primary Assembly 3023 na scaffold135_1_size832-refined unplaced-scaffold na na JJPK01000073.1 = NZ_JJPK01000073.1 Primary Assembly 832 na scaffold61_1_size22765-refined unplaced-scaffold na na JJPK01000074.1 = NZ_JJPK01000074.1 Primary Assembly 22680 na scaffold67_1_size19467-refined unplaced-scaffold na na JJPK01000075.1 = NZ_JJPK01000075.1 Primary Assembly 19467 na scaffold105_1_size4445-refined unplaced-scaffold na na JJPK01000076.1 = NZ_JJPK01000076.1 Primary Assembly 4445 na scaffold127_1_size1565-refined unplaced-scaffold na na JJPK01000077.1 = NZ_JJPK01000077.1 Primary Assembly 1565 na scaffold113_1_size3116-refined unplaced-scaffold na na JJPK01000078.1 = NZ_JJPK01000078.1 Primary Assembly 3116 na scaffold56_1_size24372-refined unplaced-scaffold na na JJPK01000079.1 = NZ_JJPK01000079.1 Primary Assembly 24372 na scaffold121_1_size2647-refined unplaced-scaffold na na JJPK01000080.1 = NZ_JJPK01000080.1 Primary Assembly 2647 na scaffold89_1_size15837-refined unplaced-scaffold na na JJPK01000081.1 = NZ_JJPK01000081.1 Primary Assembly 15837 na scaffold134_1_size922-refined unplaced-scaffold na na JJPK01000082.1 = NZ_JJPK01000082.1 Primary Assembly 922 na scaffold84_1_size13249-refined unplaced-scaffold na na JJPK01000083.1 = NZ_JJPK01000083.1 Primary Assembly 13249 na scaffold47_1_size29277-refined unplaced-scaffold na na JJPK01000084.1 = NZ_JJPK01000084.1 Primary Assembly 29090 na scaffold19_1_size58150-refined unplaced-scaffold na na JJPK01000085.1 = NZ_JJPK01000085.1 Primary Assembly 57524 na scaffold64_1_size21281-refined unplaced-scaffold na na JJPK01000086.1 = NZ_JJPK01000086.1 Primary Assembly 21281 na scaffold97_1_size7080-refined unplaced-scaffold na na JJPK01000087.1 = NZ_JJPK01000087.1 Primary Assembly 7080 na scaffold110_1_size3200-refined unplaced-scaffold na na JJPK01000088.1 = NZ_JJPK01000088.1 Primary Assembly 3200 na scaffold88_1_size11604-refined unplaced-scaffold na na JJPK01000089.1 = NZ_JJPK01000089.1 Primary Assembly 11604 na scaffold132_1_size1097-refined unplaced-scaffold na na JJPK01000090.1 = NZ_JJPK01000090.1 Primary Assembly 1097 na scaffold4_1_size113084-refined unplaced-scaffold na na JJPK01000091.1 = NZ_JJPK01000091.1 Primary Assembly 112671 na scaffold15_1_size52822-refined unplaced-scaffold na na JJPK01000092.1 = NZ_JJPK01000092.1 Primary Assembly 52807 na scaffold81_1_size13935-refined unplaced-scaffold na na JJPK01000093.1 = NZ_JJPK01000093.1 Primary Assembly 13835 na scaffold119_1_size2751-refined unplaced-scaffold na na JJPK01000094.1 = NZ_JJPK01000094.1 Primary Assembly 2751 na scaffold10_1_size74534-refined unplaced-scaffold na na JJPK01000095.1 = NZ_JJPK01000095.1 Primary Assembly 74507 na scaffold103_1_size6042-refined unplaced-scaffold na na JJPK01000096.1 = NZ_JJPK01000096.1 Primary Assembly 6042 na scaffold123_1_size2267-refined unplaced-scaffold na na JJPK01000097.1 = NZ_JJPK01000097.1 Primary Assembly 2267 na scaffold65_1_size20528-refined unplaced-scaffold na na JJPK01000098.1 = NZ_JJPK01000098.1 Primary Assembly 20528 na scaffold124_1_size2066-refined unplaced-scaffold na na JJPK01000099.1 = NZ_JJPK01000099.1 Primary Assembly 2066 na scaffold94_1_size8538-refined unplaced-scaffold na na JJPK01000100.1 = NZ_JJPK01000100.1 Primary Assembly 8538 na scaffold38_1_size102064-refined unplaced-scaffold na na JJPK01000101.1 = NZ_JJPK01000101.1 Primary Assembly 101599 na scaffold35_1_size38691-refined unplaced-scaffold na na JJPK01000102.1 = NZ_JJPK01000102.1 Primary Assembly 38281 na scaffold48_1_size29127-refined unplaced-scaffold na na JJPK01000103.1 = NZ_JJPK01000103.1 Primary Assembly 29027 na scaffold74_1_size17201-refined unplaced-scaffold na na JJPK01000104.1 = NZ_JJPK01000104.1 Primary Assembly 17201 na scaffold7_1_size79378-refined unplaced-scaffold na na JJPK01000105.1 = NZ_JJPK01000105.1 Primary Assembly 79292 na scaffold107_1_size3659-refined unplaced-scaffold na na JJPK01000106.1 = NZ_JJPK01000106.1 Primary Assembly 3659 na scaffold36_1_size36893-refined unplaced-scaffold na na JJPK01000107.1 = NZ_JJPK01000107.1 Primary Assembly 36893 na scaffold70_1_size18448-refined unplaced-scaffold na na JJPK01000108.1 = NZ_JJPK01000108.1 Primary Assembly 18448 na scaffold59_1_size23457-refined unplaced-scaffold na na JJPK01000109.1 = NZ_JJPK01000109.1 Primary Assembly 23355 na scaffold78_1_size18227-refined unplaced-scaffold na na JJPK01000110.1 = NZ_JJPK01000110.1 Primary Assembly 18227 na scaffold83_1_size13308-refined unplaced-scaffold na na JJPK01000111.1 = NZ_JJPK01000111.1 Primary Assembly 13284 na scaffold34_1_size38815-refined unplaced-scaffold na na JJPK01000112.1 = NZ_JJPK01000112.1 Primary Assembly 38715 na scaffold2_1_size113785-refined unplaced-scaffold na na JJPK01000113.1 = NZ_JJPK01000113.1 Primary Assembly 113507 na scaffold31_1_size56812-refined unplaced-scaffold na na JJPK01000114.1 = NZ_JJPK01000114.1 Primary Assembly 56797 na scaffold13_1_size62500-refined unplaced-scaffold na na JJPK01000115.1 = NZ_JJPK01000115.1 Primary Assembly 61606 na scaffold8_1_size73748-refined unplaced-scaffold na na JJPK01000116.1 = NZ_JJPK01000116.1 Primary Assembly 73665 na scaffold32_1_size40576-refined unplaced-scaffold na na JJPK01000117.1 = NZ_JJPK01000117.1 Primary Assembly 40136 na scaffold23_1_size53693-refined unplaced-scaffold na na JJPK01000118.1 = NZ_JJPK01000118.1 Primary Assembly 51028 na scaffold118_1_size2868-refined unplaced-scaffold na na JJPK01000119.1 = NZ_JJPK01000119.1 Primary Assembly 2868 na scaffold75_1_size17110-refined unplaced-scaffold na na JJPK01000120.1 = NZ_JJPK01000120.1 Primary Assembly 17110 na scaffold43_1_size32659-refined unplaced-scaffold na na JJPK01000121.1 = NZ_JJPK01000121.1 Primary Assembly 32559 na scaffold73_1_size17586-refined unplaced-scaffold na na JJPK01000122.1 = NZ_JJPK01000122.1 Primary Assembly 17586 na scaffold104_1_size5468-refined unplaced-scaffold na na JJPK01000123.1 = NZ_JJPK01000123.1 Primary Assembly 5468 na scaffold41_1_size33954-refined unplaced-scaffold na na JJPK01000124.1 = NZ_JJPK01000124.1 Primary Assembly 33954 na scaffold17_1_size54718-refined unplaced-scaffold na na JJPK01000125.1 = NZ_JJPK01000125.1 Primary Assembly 54329 na scaffold45_1_size30339-refined unplaced-scaffold na na JJPK01000126.1 = NZ_JJPK01000126.1 Primary Assembly 30166 na scaffold18_1_size50316-refined unplaced-scaffold na na JJPK01000127.1 = NZ_JJPK01000127.1 Primary Assembly 50209 na scaffold120_1_size2738-refined unplaced-scaffold na na JJPK01000128.1 = NZ_JJPK01000128.1 Primary Assembly 2738 na scaffold42_1_size33862-refined unplaced-scaffold na na JJPK01000129.1 = NZ_JJPK01000129.1 Primary Assembly 33862 na scaffold11_1_size69122-refined unplaced-scaffold na na JJPK01000130.1 = NZ_JJPK01000130.1 Primary Assembly 68694 na scaffold21_1_size46600-refined unplaced-scaffold na na JJPK01000131.1 = NZ_JJPK01000131.1 Primary Assembly 46600 na scaffold40_1_size39345-refined unplaced-scaffold na na JJPK01000132.1 = NZ_JJPK01000132.1 Primary Assembly 39245 na scaffold62_1_size21535-refined unplaced-scaffold na na JJPK01000133.1 = NZ_JJPK01000133.1 Primary Assembly 21535 na scaffold128_1_size1457-refined unplaced-scaffold na na JJPK01000134.1 = NZ_JJPK01000134.1 Primary Assembly 1457 na scaffold16_1_size51462-refined unplaced-scaffold na na JJPK01000135.1 = NZ_JJPK01000135.1 Primary Assembly 50909 na scaffold49_1_size28400-refined unplaced-scaffold na na JJPK01000136.1 = NZ_JJPK01000136.1 Primary Assembly 28400 na scaffold92_1_size9016-refined unplaced-scaffold na na JJPK01000137.1 = NZ_JJPK01000137.1 Primary Assembly 9016 na scaffold77_1_size16641-refined unplaced-scaffold na na JJPK01000138.1 = NZ_JJPK01000138.1 Primary Assembly 16641 na scaffold90_1_size10717-refined unplaced-scaffold na na JJPK01000139.1 = NZ_JJPK01000139.1 Primary Assembly 10717 na