# Assembly name: gtlEnvA5udCFS # Organism name: Methanosarcina mazei (euryarchaeotes) # Infraspecific name: strain=3.F.A.1A.3 # Taxid: 2209 # BioSample: SAMN02708944 # BioProject: PRJNA242781 # Submitter: University of Illinois at Urbana-Champaign # Date: 2015-04-23 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JJPB01 # Assembly method: IDBA-UD v. 1.1.0 # Genome coverage: 44.1x # Sequencing technology: Illumina HiSeq # GenBank assembly accession: GCA_000978945.1 # RefSeq assembly accession: GCF_000978945.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000979005.1 GCF_000979005.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold80_1_size14818-refined unplaced-scaffold na na JJPB01000001.1 = NZ_JJPB01000001.1 Primary Assembly 14818 na scaffold69_1_size21774-refined unplaced-scaffold na na JJPB01000002.1 = NZ_JJPB01000002.1 Primary Assembly 21774 na scaffold141_1_size1009-refined unplaced-scaffold na na JJPB01000003.1 = NZ_JJPB01000003.1 Primary Assembly 1009 na scaffold7_1_size116692-refined unplaced-scaffold na na JJPB01000004.1 = NZ_JJPB01000004.1 Primary Assembly 116258 na scaffold145_1_size594-refined unplaced-scaffold na na JJPB01000005.1 = NZ_JJPB01000005.1 Primary Assembly 594 na scaffold60_1_size23655-refined unplaced-scaffold na na JJPB01000006.1 = NZ_JJPB01000006.1 Primary Assembly 23655 na scaffold108_1_size6629-refined unplaced-scaffold na na JJPB01000007.1 = NZ_JJPB01000007.1 Primary Assembly 6629 na scaffold127_1_size2655-refined unplaced-scaffold na na JJPB01000008.1 = NZ_JJPB01000008.1 Primary Assembly 2655 na scaffold125_1_size3229-refined unplaced-scaffold na na JJPB01000009.1 = NZ_JJPB01000009.1 Primary Assembly 3229 na scaffold133_1_size1871-refined unplaced-scaffold na na JJPB01000010.1 = NZ_JJPB01000010.1 Primary Assembly 1871 na scaffold72_1_size19855-refined unplaced-scaffold na na JJPB01000011.1 = NZ_JJPB01000011.1 Primary Assembly 19787 na scaffold34_1_size40611-refined unplaced-scaffold na na JJPB01000012.1 = NZ_JJPB01000012.1 Primary Assembly 40611 na scaffold31_1_size42466-refined unplaced-scaffold na na JJPB01000013.1 = NZ_JJPB01000013.1 Primary Assembly 42366 na scaffold21_1_size48590-refined unplaced-scaffold na na JJPB01000014.1 = NZ_JJPB01000014.1 Primary Assembly 48490 na scaffold120_1_size4261-refined unplaced-scaffold na na JJPB01000015.1 = NZ_JJPB01000015.1 Primary Assembly 4061 na scaffold98_1_size14738-refined unplaced-scaffold na na JJPB01000016.1 = NZ_JJPB01000016.1 Primary Assembly 14743 na scaffold100_1_size8233-refined unplaced-scaffold na na JJPB01000017.1 = NZ_JJPB01000017.1 Primary Assembly 8133 na scaffold74_1_size18082-refined unplaced-scaffold na na JJPB01000018.1 = NZ_JJPB01000018.1 Primary Assembly 18082 na scaffold117_1_size4674-refined unplaced-scaffold na na JJPB01000019.1 = NZ_JJPB01000019.1 Primary Assembly 4674 na scaffold107_1_size6645-refined unplaced-scaffold na na JJPB01000020.1 = NZ_JJPB01000020.1 Primary Assembly 6645 na scaffold85_1_size13020-refined unplaced-scaffold na na JJPB01000021.1 = NZ_JJPB01000021.1 Primary Assembly 12981 na scaffold17_1_size54300-refined unplaced-scaffold na na JJPB01000022.1 = NZ_JJPB01000022.1 Primary Assembly 54300 na scaffold84_1_size13404-refined unplaced-scaffold na na JJPB01000023.1 = NZ_JJPB01000023.1 Primary Assembly 13380 na scaffold91_1_size11354-refined unplaced-scaffold na na JJPB01000024.1 = NZ_JJPB01000024.1 Primary Assembly 11354 na scaffold136_1_size1350-refined unplaced-scaffold na na JJPB01000025.1 = NZ_JJPB01000025.1 Primary Assembly 1350 na scaffold52_1_size27760-refined unplaced-scaffold na na JJPB01000026.1 = NZ_JJPB01000026.1 Primary Assembly 27745 na scaffold20_1_size48638-refined unplaced-scaffold na na JJPB01000027.1 = NZ_JJPB01000027.1 Primary Assembly 48590 na scaffold147_1_size526-refined unplaced-scaffold na na JJPB01000028.1 = NZ_JJPB01000028.1 Primary Assembly 526 na scaffold8_1_size77371-refined unplaced-scaffold na na JJPB01000029.1 = NZ_JJPB01000029.1 Primary Assembly 77371 na scaffold121_1_size4618-refined unplaced-scaffold na na JJPB01000030.1 = NZ_JJPB01000030.1 Primary Assembly 4618 na scaffold116_1_size4686-refined unplaced-scaffold na na JJPB01000031.1 = NZ_JJPB01000031.1 Primary Assembly 4686 na scaffold123_1_size3556-refined unplaced-scaffold na na JJPB01000032.1 = NZ_JJPB01000032.1 Primary Assembly 3556 na scaffold75_1_size18075-refined unplaced-scaffold na na JJPB01000033.1 = NZ_JJPB01000033.1 Primary Assembly 18075 na scaffold23_1_size46574-refined unplaced-scaffold na na JJPB01000034.1 = NZ_JJPB01000034.1 Primary Assembly 46474 na scaffold37_1_size38301-refined unplaced-scaffold na na JJPB01000035.1 = NZ_JJPB01000035.1 Primary Assembly 37655 na scaffold144_1_size701-refined unplaced-scaffold na na JJPB01000036.1 = NZ_JJPB01000036.1 Primary Assembly 701 na scaffold59_1_size24298-refined unplaced-scaffold na na JJPB01000037.1 = NZ_JJPB01000037.1 Primary Assembly 24298 na scaffold78_1_size16518-refined unplaced-scaffold na na JJPB01000038.1 = NZ_JJPB01000038.1 Primary Assembly 16418 na scaffold124_1_size3359-refined unplaced-scaffold na na JJPB01000039.1 = NZ_JJPB01000039.1 Primary Assembly 3359 na scaffold126_1_size2901-refined unplaced-scaffold na na JJPB01000040.1 = NZ_JJPB01000040.1 Primary Assembly 2901 na scaffold99_1_size8529-refined unplaced-scaffold na na JJPB01000041.1 = NZ_JJPB01000041.1 Primary Assembly 8258 na scaffold27_1_size44723-refined unplaced-scaffold na na JJPB01000042.1 = NZ_JJPB01000042.1 Primary Assembly 44626 na scaffold18_1_size53956-refined unplaced-scaffold na na JJPB01000043.1 = NZ_JJPB01000043.1 Primary Assembly 53769 na scaffold132_1_size2092-refined unplaced-scaffold na na JJPB01000044.1 = NZ_JJPB01000044.1 Primary Assembly 2092 na scaffold90_1_size11872-refined unplaced-scaffold na na JJPB01000045.1 = NZ_JJPB01000045.1 Primary Assembly 11872 na scaffold13_1_size59858-refined unplaced-scaffold na na JJPB01000046.1 = NZ_JJPB01000046.1 Primary Assembly 59717 na scaffold19_1_size51820-refined unplaced-scaffold na na JJPB01000047.1 = NZ_JJPB01000047.1 Primary Assembly 51713 na scaffold135_1_size1563-refined unplaced-scaffold na na JJPB01000048.1 = NZ_JJPB01000048.1 Primary Assembly 1563 na scaffold137_1_size1315-refined unplaced-scaffold na na JJPB01000049.1 = NZ_JJPB01000049.1 Primary Assembly 1315 na scaffold58_1_size25111-refined unplaced-scaffold na na JJPB01000050.1 = NZ_JJPB01000050.1 Primary Assembly 25089 na scaffold25_1_size44459-refined unplaced-scaffold na na JJPB01000051.1 = NZ_JJPB01000051.1 Primary Assembly 44364 na scaffold12_1_size63070-refined unplaced-scaffold na na JJPB01000052.1 = NZ_JJPB01000052.1 Primary Assembly 63038 na scaffold95_1_size9603-refined unplaced-scaffold na na JJPB01000053.1 = NZ_JJPB01000053.1 Primary Assembly 9603 na scaffold106_1_size6747-refined unplaced-scaffold na na JJPB01000054.1 = NZ_JJPB01000054.1 Primary Assembly 6747 na scaffold14_1_size58601-refined unplaced-scaffold na na JJPB01000055.1 = NZ_JJPB01000055.1 Primary Assembly 58408 na scaffold70_1_size21610-refined unplaced-scaffold na na JJPB01000056.1 = NZ_JJPB01000056.1 Primary Assembly 21610 na scaffold94_1_size10216-refined unplaced-scaffold na na JJPB01000057.1 = NZ_JJPB01000057.1 Primary Assembly 10216 na scaffold143_1_size763-refined unplaced-scaffold na na JJPB01000058.1 = NZ_JJPB01000058.1 Primary Assembly 763 na scaffold140_1_size1063-refined unplaced-scaffold na na JJPB01000059.1 = NZ_JJPB01000059.1 Primary Assembly 1063 na scaffold5_1_size94114-refined unplaced-scaffold na na JJPB01000060.1 = NZ_JJPB01000060.1 Primary Assembly 93726 na scaffold41_1_size70890-refined unplaced-scaffold na na JJPB01000061.1 = NZ_JJPB01000061.1 Primary Assembly 70890 na scaffold28_1_size44038-refined unplaced-scaffold na na JJPB01000062.1 = NZ_JJPB01000062.1 Primary Assembly 43999 na scaffold109_1_size12673-refined unplaced-scaffold na na JJPB01000063.1 = NZ_JJPB01000063.1 Primary Assembly 12673 na scaffold65_1_size22713-refined unplaced-scaffold na na JJPB01000064.1 = NZ_JJPB01000064.1 Primary Assembly 22713 na scaffold130_1_size2353-refined unplaced-scaffold na na JJPB01000065.1 = NZ_JJPB01000065.1 Primary Assembly 2353 na scaffold110_1_size6347-refined unplaced-scaffold na na JJPB01000066.1 = NZ_JJPB01000066.1 Primary Assembly 6347 na scaffold146_1_size575-refined unplaced-scaffold na na JJPB01000067.1 = NZ_JJPB01000067.1 Primary Assembly 574 na scaffold92_1_size10753-refined unplaced-scaffold na na JJPB01000068.1 = NZ_JJPB01000068.1 Primary Assembly 10753 na scaffold49_1_size28092-refined unplaced-scaffold na na JJPB01000069.1 = NZ_JJPB01000069.1 Primary Assembly 28092 na scaffold79_1_size17826-refined unplaced-scaffold na na JJPB01000070.1 = NZ_JJPB01000070.1 Primary Assembly 17737 na scaffold45_1_size29755-refined unplaced-scaffold na na JJPB01000071.1 = NZ_JJPB01000071.1 Primary Assembly 29755 na scaffold87_1_size12172-refined unplaced-scaffold na na JJPB01000072.1 = NZ_JJPB01000072.1 Primary Assembly 12172 na scaffold118_1_size5428-refined unplaced-scaffold na na JJPB01000073.1 = NZ_JJPB01000073.1 Primary Assembly 5428 na scaffold22_1_size59869-refined unplaced-scaffold na na JJPB01000074.1 = NZ_JJPB01000074.1 Primary Assembly 59869 na scaffold38_1_size72909-refined unplaced-scaffold na na JJPB01000075.1 = NZ_JJPB01000075.1 Primary Assembly 72662 na scaffold105_1_size7398-refined unplaced-scaffold na na JJPB01000076.1 = NZ_JJPB01000076.1 Primary Assembly 7398 na scaffold39_1_size37075-refined unplaced-scaffold na na JJPB01000077.1 = NZ_JJPB01000077.1 Primary Assembly 37006 na scaffold53_1_size34765-refined unplaced-scaffold na na JJPB01000078.1 = NZ_JJPB01000078.1 Primary Assembly 34765 na scaffold68_1_size21781-refined unplaced-scaffold na na JJPB01000079.1 = NZ_JJPB01000079.1 Primary Assembly 21681 na scaffold30_1_size42591-refined unplaced-scaffold na na JJPB01000080.1 = NZ_JJPB01000080.1 Primary Assembly 42493 na scaffold64_1_size22775-refined unplaced-scaffold na na JJPB01000081.1 = NZ_JJPB01000081.1 Primary Assembly 22676 na scaffold97_1_size16465-refined unplaced-scaffold na na JJPB01000082.1 = NZ_JJPB01000082.1 Primary Assembly 16390 na scaffold62_1_size23111-refined unplaced-scaffold na na JJPB01000083.1 = NZ_JJPB01000083.1 Primary Assembly 23111 na scaffold112_1_size7622-refined unplaced-scaffold na na JJPB01000084.1 = NZ_JJPB01000084.1 Primary Assembly 7622 na scaffold9_1_size76778-refined unplaced-scaffold na na JJPB01000085.1 = NZ_JJPB01000085.1 Primary Assembly 76511 na scaffold1_1_size151681-refined unplaced-scaffold na na JJPB01000086.1 = NZ_JJPB01000086.1 Primary Assembly 150407 na scaffold32_1_size41413-refined unplaced-scaffold na na JJPB01000087.1 = NZ_JJPB01000087.1 Primary Assembly 41331 na scaffold104_1_size7711-refined unplaced-scaffold na na JJPB01000088.1 = NZ_JJPB01000088.1 Primary Assembly 7645 na scaffold47_1_size28555-refined unplaced-scaffold na na JJPB01000089.1 = NZ_JJPB01000089.1 Primary Assembly 28555 na scaffold43_1_size33348-refined unplaced-scaffold na na JJPB01000090.1 = NZ_JJPB01000090.1 Primary Assembly 33248 na scaffold16_1_size54566-refined unplaced-scaffold na na JJPB01000091.1 = NZ_JJPB01000091.1 Primary Assembly 54467 na scaffold77_1_size16782-refined unplaced-scaffold na na JJPB01000092.1 = NZ_JJPB01000092.1 Primary Assembly 16782 na scaffold128_1_size2655-refined unplaced-scaffold na na JJPB01000093.1 = NZ_JJPB01000093.1 Primary Assembly 2655 na scaffold44_1_size30109-refined unplaced-scaffold na na JJPB01000094.1 = NZ_JJPB01000094.1 Primary Assembly 30109 na scaffold71_1_size21216-refined unplaced-scaffold na na JJPB01000095.1 = NZ_JJPB01000095.1 Primary Assembly 21216 na scaffold101_1_size8216-refined unplaced-scaffold na na JJPB01000096.1 = NZ_JJPB01000096.1 Primary Assembly 8216 na scaffold119_1_size4315-refined unplaced-scaffold na na JJPB01000097.1 = NZ_JJPB01000097.1 Primary Assembly 4315 na scaffold40_1_size36327-refined unplaced-scaffold na na JJPB01000098.1 = NZ_JJPB01000098.1 Primary Assembly 36327 na scaffold35_1_size40213-refined unplaced-scaffold na na JJPB01000099.1 = NZ_JJPB01000099.1 Primary Assembly 40213 na scaffold113_1_size5509-refined unplaced-scaffold na na JJPB01000100.1 = NZ_JJPB01000100.1 Primary Assembly 5509 na scaffold122_1_size3603-refined unplaced-scaffold na na JJPB01000101.1 = NZ_JJPB01000101.1 Primary Assembly 3603 na scaffold11_1_size72311-refined unplaced-scaffold na na JJPB01000102.1 = NZ_JJPB01000102.1 Primary Assembly 72311 na scaffold81_1_size14187-refined unplaced-scaffold na na JJPB01000103.1 = NZ_JJPB01000103.1 Primary Assembly 14187 na scaffold139_1_size1064-refined unplaced-scaffold na na JJPB01000104.1 = NZ_JJPB01000104.1 Primary Assembly 1025 na scaffold89_1_size11911-refined unplaced-scaffold na na JJPB01000105.1 = NZ_JJPB01000105.1 Primary Assembly 11911 na scaffold102_1_size7922-refined unplaced-scaffold na na JJPB01000106.1 = NZ_JJPB01000106.1 Primary Assembly 7922 na scaffold134_1_size1617-refined unplaced-scaffold na na JJPB01000107.1 = NZ_JJPB01000107.1 Primary Assembly 1617 na scaffold46_1_size29334-refined unplaced-scaffold na na JJPB01000108.1 = NZ_JJPB01000108.1 Primary Assembly 29334 na scaffold6_1_size83000-refined unplaced-scaffold na na JJPB01000109.1 = NZ_JJPB01000109.1 Primary Assembly 80983 na scaffold111_1_size5980-refined unplaced-scaffold na na JJPB01000110.1 = NZ_JJPB01000110.1 Primary Assembly 5980 na scaffold115_1_size4702-refined unplaced-scaffold na na JJPB01000111.1 = NZ_JJPB01000111.1 Primary Assembly 4702 na scaffold15_1_size58281-refined unplaced-scaffold na na JJPB01000112.1 = NZ_JJPB01000112.1 Primary Assembly 58196 na scaffold103_1_size7870-refined unplaced-scaffold na na JJPB01000113.1 = NZ_JJPB01000113.1 Primary Assembly 7870 na scaffold131_1_size2231-refined unplaced-scaffold na na JJPB01000114.1 = NZ_JJPB01000114.1 Primary Assembly 2231 na scaffold114_1_size5054-refined unplaced-scaffold na na JJPB01000115.1 = NZ_JJPB01000115.1 Primary Assembly 4956 na scaffold24_1_size45149-refined unplaced-scaffold na na JJPB01000116.1 = NZ_JJPB01000116.1 Primary Assembly 45049 na scaffold10_1_size97759-refined unplaced-scaffold na na JJPB01000117.1 = NZ_JJPB01000117.1 Primary Assembly 97576 na scaffold93_1_size10547-refined unplaced-scaffold na na JJPB01000118.1 = NZ_JJPB01000118.1 Primary Assembly 10447 na scaffold48_1_size40868-refined unplaced-scaffold na na JJPB01000119.1 = NZ_JJPB01000119.1 Primary Assembly 40868 na scaffold4_1_size96077-refined unplaced-scaffold na na JJPB01000120.1 = NZ_JJPB01000120.1 Primary Assembly 95786 na scaffold76_1_size16988-refined unplaced-scaffold na na JJPB01000121.1 = NZ_JJPB01000121.1 Primary Assembly 16481 na scaffold33_1_size48555-refined unplaced-scaffold na na JJPB01000122.1 = NZ_JJPB01000122.1 Primary Assembly 48129 na scaffold26_1_size44205-refined unplaced-scaffold na na JJPB01000123.1 = NZ_JJPB01000123.1 Primary Assembly 44105 na scaffold96_1_size9445-refined unplaced-scaffold na na JJPB01000124.1 = NZ_JJPB01000124.1 Primary Assembly 9445 na scaffold36_1_size38784-refined unplaced-scaffold na na JJPB01000125.1 = NZ_JJPB01000125.1 Primary Assembly 38685 na scaffold51_1_size27790-refined unplaced-scaffold na na JJPB01000126.1 = NZ_JJPB01000126.1 Primary Assembly 27790 na scaffold82_1_size23350-refined unplaced-scaffold na na JJPB01000127.1 = NZ_JJPB01000127.1 Primary Assembly 20282 na scaffold83_1_size13930-refined unplaced-scaffold na na JJPB01000128.1 = NZ_JJPB01000128.1 Primary Assembly 9856 na scaffold73_1_size18945-refined unplaced-scaffold na na JJPB01000129.1 = NZ_JJPB01000129.1 Primary Assembly 18945 na scaffold2_1_size163058-refined unplaced-scaffold na na JJPB01000130.1 = NZ_JJPB01000130.1 Primary Assembly 162700 na scaffold3_1_size118016-refined unplaced-scaffold na na JJPB01000131.1 = NZ_JJPB01000131.1 Primary Assembly 117847 na scaffold129_1_size2370-refined unplaced-scaffold na na JJPB01000132.1 = NZ_JJPB01000132.1 Primary Assembly 2370 na scaffold42_1_size35335-refined unplaced-scaffold na na JJPB01000133.1 = NZ_JJPB01000133.1 Primary Assembly 35335 na scaffold54_1_size26859-refined unplaced-scaffold na na JJPB01000134.1 = NZ_JJPB01000134.1 Primary Assembly 26792 na scaffold29_1_size73913-refined unplaced-scaffold na na JJPB01000135.1 = NZ_JJPB01000135.1 Primary Assembly 73558 na scaffold55_1_size26483-refined unplaced-scaffold na na JJPB01000136.1 = NZ_JJPB01000136.1 Primary Assembly 26383 na scaffold56_1_size25971-refined unplaced-scaffold na na JJPB01000137.1 = NZ_JJPB01000137.1 Primary Assembly 25871 na scaffold88_1_size11974-refined unplaced-scaffold na na JJPB01000138.1 = NZ_JJPB01000138.1 Primary Assembly 11974 na scaffold138_1_size1096-refined unplaced-scaffold na na JJPB01000139.1 = NZ_JJPB01000139.1 Primary Assembly 1096 na scaffold50_1_size28060-refined unplaced-scaffold na na JJPB01000140.1 = NZ_JJPB01000140.1 Primary Assembly 28060 na scaffold57_1_size36110-refined unplaced-scaffold na na JJPB01000141.1 = NZ_JJPB01000141.1 Primary Assembly 36110 na scaffold66_1_size31594-refined unplaced-scaffold na na JJPB01000142.1 = NZ_JJPB01000142.1 Primary Assembly 31532 na scaffold142_1_size844-refined unplaced-scaffold na na JJPB01000143.1 = NZ_JJPB01000143.1 Primary Assembly 844 na scaffold61_1_size23234-refined unplaced-scaffold na na JJPB01000144.1 = NZ_JJPB01000144.1 Primary Assembly 23085 na scaffold63_1_size44762-refined unplaced-scaffold na na JJPB01000145.1 = NZ_JJPB01000145.1 Primary Assembly 44662 na scaffold67_1_size36073-refined unplaced-scaffold na na JJPB01000146.1 = NZ_JJPB01000146.1 Primary Assembly 36073 na scaffold86_1_size12764-refined unplaced-scaffold na na JJPB01000147.1 = NZ_JJPB01000147.1 Primary Assembly 12764 na