hub GCF_000895795.1 genome assembly shortLabel Sida mosaic Alagoas virus (BgV02A.1.C59 2012) longLabel Sida mosaic Alagoas virus (BgV02A.1.C59 2012)/Sida mosaic Alagoas virus/GCF_000895795.1_ViralMultiSegProj81007 genome assembly useOneFile on email genome-www@soe.ucsc.edu descriptionUrl html/GCF_000895795.1_ViralMultiSegProj81007.description.html genome GCF_000895795.1 taxId 1046571 groups groups.txt description Sida mosaic Alagoas virus (BgV02A.1.C59 2012) twoBitPath GCF_000895795.1.2bit twoBitBptUrl GCF_000895795.1.2bit.bpt chromSizes GCF_000895795.1.chrom.sizes.txt chromAliasBb GCF_000895795.1.chromAlias.bb organism ViralMultiSegProj81007 Jan. 2012 defaultPos NC_016573.1:892-2678 scientificName Sida mosaic Alagoas virus htmlPath html/GCF_000895795.1_ViralMultiSegProj81007.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/895/795/GCF_000895795.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/895/795/GCF_000895795.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/895/795/GCF_000895795.1 track assembly longLabel Assembly shortLabel Assembly visibility hide colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.assembly.bb type bigBed 6 html html/GCF_000895795.1_ViralMultiSegProj81007.assembly searchIndex name searchTrix ixIxx/GCF_000895795.1_ViralMultiSegProj81007.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility dense autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.gc5Base.bw html html/GCF_000895795.1_ViralMultiSegProj81007.gc5Base track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.simpleRepeat.bb html html/GCF_000895795.1_ViralMultiSegProj81007.simpleRepeat track ncbiGene longLabel RefSeq gene predictions from NCBI shortLabel NCBI RefSeq visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.ncbiGene.bb type bigGenePred urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$" html html/GCF_000895795.1_ViralMultiSegProj81007.ncbiGene searchIndex name searchTrix ixIxx/GCF_000895795.1_ViralMultiSegProj81007.ncbiGene.ix urlLabel Entrez gene: labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility dense type bigBed 4 + html html/GCF_000895795.1_ViralMultiSegProj81007.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_000895795.1_ViralMultiSegProj81007.windowMasker.bb html html/GCF_000895795.1_ViralMultiSegProj81007.windowMasker