track assembly
longLabel Assembly
shortLabel Assembly
visibility pack
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.assembly.bb
type bigBed 6
html html/GCF_000349665.1_MesAur1.0.assembly
searchIndex name
searchTrix ixIxx/GCF_000349665.1_MesAur1.0.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track gap
longLabel AGP gap
shortLabel Gap (AGP defined)
visibility dense
color 0,0,0
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.gap.bb
type bigBed 4
group map
html html/GCF_000349665.1_MesAur1.0.gap

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility full
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.gc5Base.bw
html html/GCF_000349665.1_MesAur1.0.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_000349665.1_MesAur1.0.tanDups

    track gapOverlap
    parent tanDups on
    shortLabel Gap Overlaps
    longLabel Paired exactly identical sequence on each side of a gap
    bigDataUrl bbi/GCF_000349665.1_MesAur1.0.gapOverlap.bb
    type bigBed 12

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_000349665.1_MesAur1.0.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.rmsk.bb
maxWindowToDraw 5000000
html html/GCF_000349665.1_MesAur1.0.repeatMasker

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.simpleRepeat.bb
html html/GCF_000349665.1_MesAur1.0.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI Mesocricetus auratus Annotation Release 102 (2019-12-10)
html html/GCF_000349665.1_MesAur1.0.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        altColor 120,12,12
        shortLabel RefSeq All
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_000349665.1_MesAur1.0.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqCurated
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Curated
        longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_000349665.1_MesAur1.0.ncbiRefSeqCurated.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.ncbiRefSeqCurated.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 2

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_000349665.1_MesAur1.0.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_000349665.1_MesAur1.0.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility pack
type bigBed 4 +
html html/GCF_000349665.1_MesAur1.0.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_000349665.1_MesAur1.0.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_000349665.1_MesAur1.0.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.windowMasker.bb
html html/GCF_000349665.1_MesAur1.0.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.allGaps.bb
html html/GCF_000349665.1_MesAur1.0.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.augustus.bb
html html/GCF_000349665.1_MesAur1.0.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_000349665.1_MesAur1.0.xenoRefGene.ix
html html/GCF_000349665.1_MesAur1.0.xenoRefGene

track ensGene
shortLabel Ensembl genes
longLabel Ensembl genes version 103/Feb. 2021
group genes
priority 40
visibility pack
color 150,0,0
type bigBed 12 .
bigDataUrl bbi/GCF_000349665.1_MesAur1.0.ensGene.bb
searchIndex name
searchTrix ixIxx/GCF_000349665.1_MesAur1.0.ensGene.ix
html html/GCF_000349665.1_MesAur1.0.ensGene

track GCF_000349665.1_MesAur1.0ChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain and Net alignments to target sequence: GCF_000349665.1_MesAur1.0
subGroup1 view Views chain=Chains net=Nets
subGroup2 species Species s000=hg38 s001=mm10 s002=mm39 s003=rn6
subGroup3 clade Clade c00=human
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=clade dimensionY=species
sortOrder species=+ view=+ clade=+
configurable on
html html/GCF_000349665.1_MesAur1.0.chainNet

    track GCF_000349665.1_MesAur1.0ChainNetViewchain
    shortLabel  Chains
    view chain
    visibility pack
    subTrack GCF_000349665.1_MesAur1.0ChainNet
    spectrum on

        track chainHg38
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel hg38 Chain
        longLabel hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainHg38.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainHg38Link.bb
        otherDb hg38
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 1

        track chainSynHg38
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel hg38 synChain
        longLabel hg38 (Dec. 2013) Syntenic Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynHg38.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynHg38Link.bb
        otherDb hg38
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 2

        track chainRBestHg38
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel hg38 rbChain
        longLabel hg38 (Dec. 2013) Reciprocal Best Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestHg38.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestHg38Link.bb
        otherDb hg38
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 3

        track chainLiftOverHg38
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel hg38 loChain
        longLabel hg38 (Dec. 2013) Lift Over Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverHg38.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverHg38Link.bb
        otherDb hg38
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 4

        track chainMm10
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel mm10 Chain
        longLabel mm10 (Dec. 2011) Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainMm10.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainMm10Link.bb
        otherDb mm10
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 5

        track chainSynMm10
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel mm10 synChain
        longLabel mm10 (Dec. 2011) Syntenic Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynMm10.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynMm10Link.bb
        otherDb mm10
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 6

        track chainRBestMm10
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel mm10 rbChain
        longLabel mm10 (Dec. 2011) Reciprocal Best Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestMm10.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestMm10Link.bb
        otherDb mm10
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 7

        track chainLiftOverMm10
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel mm10 loChain
        longLabel mm10 (Dec. 2011) Lift Over Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverMm10.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverMm10Link.bb
        otherDb mm10
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 8

        track chainMm39
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel mm39 Chain
        longLabel mm39 (Jun. 2020) Chained Alignments
        type bigChain mm39
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainMm39.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainMm39Link.bb
        otherDb mm39
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 9

        track chainSynMm39
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel mm39 synChain
        longLabel mm39 (Jun. 2020) Syntenic Chained Alignments
        type bigChain mm39
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynMm39.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynMm39Link.bb
        otherDb mm39
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 10

        track chainRBestMm39
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel mm39 rbChain
        longLabel mm39 (Jun. 2020) Reciprocal Best Chained Alignments
        type bigChain mm39
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestMm39.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestMm39Link.bb
        otherDb mm39
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 11

        track chainLiftOverMm39
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel mm39 loChain
        longLabel mm39 (Jun. 2020) Lift Over Chained Alignments
        type bigChain mm39
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverMm39.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverMm39Link.bb
        otherDb mm39
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 12

        track chainRn6
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel rn6 Chain
        longLabel rn6 (Jul. 2014) Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRn6.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRn6Link.bb
        otherDb rn6
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 13

        track chainSynRn6
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel rn6 synChain
        longLabel rn6 (Jul. 2014) Syntenic Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynRn6.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainSynRn6Link.bb
        otherDb rn6
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 14

        track chainRBestRn6
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel rn6 rbChain
        longLabel rn6 (Jul. 2014) Reciprocal Best Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestRn6.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainRBestRn6Link.bb
        otherDb rn6
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 15

        track chainLiftOverRn6
        subTrack GCF_000349665.1_MesAur1.0ChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel rn6 loChain
        longLabel rn6 (Jul. 2014) Lift Over Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverRn6.bb
        linkDataUrl bbi/GCF_000349665.1_MesAur1.0.chainLiftOverRn6Link.bb
        otherDb rn6
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 16

    track GCF_000349665.1_MesAur1.0MafNetViewnet
    shortLabel Nets
    view net
    visibility dense
    subTrack GCF_000349665.1_MesAur1.0ChainNet

        track synNetHg38
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s000 clade=c00
        shortLabel hg38 synNet
        longLabel hg38 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.hg38.synNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.hg38.synNet.summary.bb
        speciesOrder hg38
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 1

        track rbestNetHg38
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s000 clade=c00
        shortLabel hg38 rbestNet
        longLabel hg38 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.hg38.rbestNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.hg38.rbestNet.summary.bb
        speciesOrder hg38
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 2

        track liftOverNetHg38
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s000 clade=c00
        shortLabel hg38 liftOverNet
        longLabel hg38 (some date) Lift Over Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.hg38.liftOverNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.hg38.liftOverNet.summary.bb
        speciesOrder hg38
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 3

        track synNetMm10
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s001 clade=c00
        shortLabel mm10 synNet
        longLabel mm10 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.mm10.synNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.mm10.synNet.summary.bb
        speciesOrder mm10
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 4

        track rbestNetMm10
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s001 clade=c00
        shortLabel mm10 rbestNet
        longLabel mm10 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.mm10.rbestNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.mm10.rbestNet.summary.bb
        speciesOrder mm10
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 5

        track liftOverNetMm10
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s001 clade=c00
        shortLabel mm10 liftOverNet
        longLabel mm10 (some date) Lift Over Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.mm10.liftOverNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.mm10.liftOverNet.summary.bb
        speciesOrder mm10
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 6

        track synNetMm39
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s002 clade=c00
        shortLabel mm39 synNet
        longLabel mm39 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.mm39.synNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.mm39.synNet.summary.bb
        speciesOrder mm39
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 7

        track rbestNetMm39
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s002 clade=c00
        shortLabel mm39 rbestNet
        longLabel mm39 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.mm39.rbestNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.mm39.rbestNet.summary.bb
        speciesOrder mm39
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 8

        track liftOverNetMm39
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s002 clade=c00
        shortLabel mm39 liftOverNet
        longLabel mm39 (some date) Lift Over Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.mm39.liftOverNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.mm39.liftOverNet.summary.bb
        speciesOrder mm39
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 9

        track synNetRn6
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s003 clade=c00
        shortLabel rn6 synNet
        longLabel rn6 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.rn6.synNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.rn6.synNet.summary.bb
        speciesOrder rn6
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 10

        track rbestNetRn6
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s003 clade=c00
        shortLabel rn6 rbestNet
        longLabel rn6 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.rn6.rbestNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.rn6.rbestNet.summary.bb
        speciesOrder rn6
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 11

        track liftOverNetRn6
        parent GCF_000349665.1_MesAur1.0MafNetViewnet
        subGroups view=net species=s003 clade=c00
        shortLabel rn6 liftOverNet
        longLabel rn6 (some date) Lift Over Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_000349665.1_MesAur1.0.rn6.liftOverNet.bb
        summary bbi/GCF_000349665.1_MesAur1.0.rn6.liftOverNet.summary.bb
        speciesOrder rn6
        html html/GCF_000349665.1_MesAur1.0.chainNet
        priority 12

track HLTOGAannotvHg38v1
bigDataUrl bbi/HLTOGAannotVsHg38v1.bb
shortLabel TOGA vs. hg38
longLabel TOGA annotations using human/hg38 as reference
group genes
visibility pack
itemRgb on
type bigBed 12
searchIndex name
searchTrix  ixIxx/HLTOGAannotVsHg38v1.ix
html html/TOGAannotation