RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.vSl7Rm/RM_3097234.ThuJan91001432025
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1736445703
Database = /dev/shm/rModeler.vSl7Rm/GCF_000331085.3_ASM33108v2   - Sequences = 1
  - Bases = 816451
Storage Throughput = fair ( 415.58 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 816340 bp ( 816337 non ambiguous )
   - Num Contigs Represented = 1
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:00:44 (hh:mm:ss) Elapsed Time
Round Time: 00:00:54 (hh:mm:ss) Elapsed Time : 4 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:00 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       119 repeats masked totaling 19925 bp(s).
   - TE Masking time 00:00:01 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 816340 bp
       Num Contigs Represented = 1
       Non ambiguous bp:
             Initial: 816337 bp
             After Masking: 795068 bp
             Masked: 2.61 % 
 -- Input Database Coverage: 816340 bp out of 816451 bp ( 99.99 % )
Sampling Time: 00:00:04 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 210
Comparison Time: 00:00:24 (hh:mm:ss) Elapsed Time, 581 HSPs Collected
Number of families returned by RECON: 59
Round Time: 00:01:07 (hh:mm:ss) Elapsed Time : 1 families discovered.

RepeatScout/RECON discovery complete: 5 families found


Classification Time: 00:00:37 (hh:mm:ss) Elapsed Time


Program Time: 00:02:38 (hh:mm:ss) Elapsed Time