RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.yWwwAB/RM_23595.ThuJul41916262024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1720145785
Database = /dev/shm/rModeler.yWwwAB/GCF_000015425.1_ASM1542v1   - Sequences = 3
  - Bases = 4001457
Storage Throughput = excellent ( 1055.79 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 4001355 bp ( 4001354 non ambiguous )
   - Num Contigs Represented = 3
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:02:52 (hh:mm:ss) Elapsed Time
Round Time: 00:03:15 (hh:mm:ss) Elapsed Time : 2 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:05 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       50 repeats masked totaling 35683 bp(s).
   - TE Masking time 00:00:02 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 4001355 bp
       Num Contigs Represented = 3
       Non ambiguous bp:
             Initial: 4001354 bp
             After Masking: 3963496 bp
             Masked: 0.95 % 
 -- Input Database Coverage: 4001355 bp out of 4001457 bp ( 100.00 % )
Sampling Time: 00:00:08 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 5151
Comparison Time: 00:01:28 (hh:mm:ss) Elapsed Time, 1348 HSPs Collected
Number of families returned by RECON: 467
Round Time: 00:01:38 (hh:mm:ss) Elapsed Time : 0 families discovered.

RepeatScout/RECON discovery complete: 2 families found


Classification Time: 00:00:25 (hh:mm:ss) Elapsed Time


Program Time: 00:05:18 (hh:mm:ss) Elapsed Time